NO04G00960, NO04G00960 (gene) Nannochloropsis oceanica

Overview
NameNO04G00960
Unique NameNO04G00960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1005
Alignment locationchr4:308242..309246 +

Link to JBrowse

Properties
Property NameValue
DescriptionGcn5-related n-acetyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:308242..309246 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016181Acyl_CoA_acyltransferase
IPR000182GNAT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
BLAST of NO04G00960 vs. NCBI_GenBank
Match: EWM28460.1 (gcn5-related n-acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 317.0 bits (811), Expect = 7.000e-83
Identity = 166/248 (66.94%), Postives = 185/248 (74.60%), Query Frame = 0
Query:   69 SPCLPTSSSFTYSSSIPTRTRLCVRPANKADLRRVATMQVAEYGGDGILFFWHYLQELDRLQTSYWVEPVRHTMLVLVDDSSSSPSSLSPSSSSFPFSPLSVALRALDNFFLGDPRIVGFVDLDARERRVDKTTPDPYLSDLIVDASRRGQGLGKALMLEAEAEAERWGFPAVYLKVRKNNARGYGLYASLGYQVLWEWPGEGVWLMRKWVMDEGEEAREEAEKKEREDCQMMVGTVMMPCMNWVEGE 317
            +PCLP S             RL VRPANKADLRRVATMQV EYGG GIL+ WHYLQELDRLQTSYW++P  HTMLV VD   S+PS+         F P S   ++ D F+ GDPRIVGFVDLDAR+RRVDKTTP PYLSDLIV+ SRRGQGLG+ LM  AE EA RWG+PAVYLKVRK NARG+GLYASLGY+VLWEWPGE VW+MRKWV+D  EE R+EA KKERE  + MVG VMMP M W   E
Sbjct:   95 APCLPQS-------------RLSVRPANKADLRRVATMQVTEYGGQGILYLWHYLQELDRLQTSYWIDPFHHTMLVAVD---STPSA---------FRPFSRIFQSWDAFWGGDPRIVGFVDLDARDRRVDKTTPTPYLSDLIVEGSRRGQGLGRQLMEAAEDEARRWGYPAVYLKVRKCNARGFGLYASLGYEVLWEWPGERVWMMRKWVVD--EEDRKEAVKKEREGWEGMVGAVMMPFMTWAGEE 315          
BLAST of NO04G00960 vs. NCBI_GenBank
Match: CBN77487.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 82.8 bits (203), Expect = 2.200e-12
Identity = 57/175 (32.57%), Postives = 79/175 (45.14%), Query Frame = 0
Query:   92 VRPANKADLRRVATMQVAEYGGDGILFFWHYLQELDRLQTS---YWVEPVRHTMLVLVDDSSSSPSSLSPSSSSFPFSPLSVALRALDNFFLGDPRIVGFVDLDARERRVDKTTPDPYLSDLIVDASRRGQGLGKALMLEAEAEAERWGFPAVYLKVRKNNARGYGLYASLGYQV 264
            ++PA   +LR V+ + VAE+ G  I +    L EL+RLQ +   Y  +  RH ML+                                   + D  + GFVD+D RE+R  +T   PYLSDL V    R  G+G  L+   E     WG+  +YLKVR+ N     LY +LGY V
Sbjct:  101 IKPAKFHNLRAVSRLLVAEFYGSTIWYPAQCLVELNRLQENFHGYGEDASRHLMLLATS--------------------------------VEDGSLAGFVDIDGREKRPGQTGVRPYLSDLAVADRYRRMGIGTELVKACEDACIEWGYDNMYLKVREGNVAAEKLYENLGYVV 243          
BLAST of NO04G00960 vs. NCBI_GenBank
Match: WP_013191315.1 (N-acetyltransferase [Trichormus azollae] >ADI64298.1 GCN5-related N-acetyltransferase ['Nostoc azollae' 0708])

HSP 1 Score: 69.3 bits (168), Expect = 2.500e-8
Identity = 55/184 (29.89%), Postives = 82/184 (44.57%), Query Frame = 0
Query:   82 SSIPTRTRLCVRPANKADLRRVATMQVAEYGGDGILFFWHYLQELDRLQTSYWVEPVRHTMLVLVDDSSSSPSSLSPSSSSFPFSPLSVALRALDNFFLGDPRIVGFVDLDAR--ERRVDKTTPDPYLSDLIVDASRRGQGLGKALMLEAEAEAERWGFPAVYLKVRKNNARGYGLYASLGYQV 264
            +SIP   ++ +R A  ADL  +A +    +     L+ W +   L RL      E +RH +   +                    P  V L A+DN   G  +++G V+L  R  +   +     PYLS+L VD   R  GLG +L+   E   + WGF  +YL V +NN +   LY  LGY+V
Sbjct:   17 TSIPDSGQIQIRVATSADLYSIAQIIAESFHSRKGLWGWAF--PLFRLGI---YEDLRHRLASRI--------------------PHQVCLVAIDNSISGTNQVLGTVELSVRFSDSWANFHRSFPYLSNLAVDPKYRRYGLGSSLLTSCEQVCQDWGFHDLYLHVLENNHQARKLYFKLGYRV 175          
BLAST of NO04G00960 vs. NCBI_GenBank
Match: EJK60911.1 (hypothetical protein THAOC_18671 [Thalassiosira oceanica])

HSP 1 Score: 66.6 bits (161), Expect = 1.600e-7
Identity = 59/186 (31.72%), Postives = 85/186 (45.70%), Query Frame = 0
Query:   92 VRPANKADLRRVATMQVAEY--GGDGILFFWHYLQELDRLQTSYWVEPV-RHTMLVLVDDSSSSPSSLSPSSSSFPFSPLSVALRALDNFFLGDPRIVGFVDLDAR--ERRVDKTT----------PDPYLSDLIVDASRRGQGLGKALMLEAEAEAERWGFPAVYLKVRKNNARGYGLYASLGYQ 263
            VR A+  DL RVA +    +  G + +L    YL ELDRLQ ++  + + RH  L + D S+                              GD  +VGF D+D R  ERR    +          P PYLSDL V++S R +G+ K LM +AE  A   G+  +YL V  +N     +Y+ +GY+
Sbjct:  170 VRSASYDDLPRVAELMTDCFYPGLNAMLRPVRYLMELDRLQGNFPYDDIDRHYYLCVFDTST------------------------------GD-CLVGFCDIDGRILERRQGLVSALSPLGNVRRPQPYLSDLAVNSSWRRKGVAKTLMSKAERLAREMGYNELYLGVNGDNHLALQMYSKMGYE 324          
The following BLAST results are available for this feature:
BLAST of NO04G00960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM28460.17.000e-8366.94gcn5-related n-acetyltransferase [Nannochloropsis ... [more]
CBN77487.12.200e-1232.57conserved unknown protein [Ectocarpus siliculosus][more]
WP_013191315.12.500e-829.89N-acetyltransferase [Trichormus azollae] >ADI64298... [more]
EJK60911.11.600e-731.72hypothetical protein THAOC_18671 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005006NSK005006Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00960.1NO04G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578267gene_1875Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100617g3gene2124Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00960.1NO04G00960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00960 ID=NO04G00960|Name=NO04G00960|organism=Nannochloropsis oceanica|type=gene|length=1005bp
ATGACGAAAAGGACACGGCCGCCACTACCTCCACCCCCTTTCCTGTCCTT
CTCCCTCCCCCTCTTCCTCCTCCTACAAATCATTTTAGACGCCGCCACCG
CCTTCCTCCTCCCTCTCCCCACCCACCCTCCCCGCCTACGACAGCCCTTC
CCGCCACCTTACGCCACCACTACCTCCTCGCCAAATAACAACAACGACGA
CGTCTCTCCCTGCCTCCCCACATCATCCTCCTTCACCTATTCCTCCTCCA
TTCCCACCCGCACCCGTCTCTGTGTCCGTCCCGCCAACAAGGCGGACCTA
CGGCGCGTGGCCACCATGCAAGTTGCCGAGTACGGCGGAGACGGTATTCT
TTTCTTCTGGCACTATTTACAAGAACTCGATCGGCTTCAAACTTCTTATT
GGGTCGAGCCCGTGCGACACACAATGCTTGTCCTTGTCGACGACTCCTCT
TCCTCCCCCTCCTCCCTCTCTCCCTCCTCCTCATCATTCCCCTTTTCCCC
CCTCTCTGTGGCCCTCCGTGCGCTCGACAACTTTTTCCTAGGCGACCCGC
GCATTGTGGGCTTCGTGGACTTGGATGCACGGGAGCGCCGCGTGGACAAA
ACCACCCCCGACCCCTACCTCTCCGATTTAATCGTTGACGCCTCTCGACG
CGGCCAAGGACTAGGGAAGGCCTTGATGCTCGAGGCAGAGGCGGAGGCGG
AGAGGTGGGGCTTTCCAGCAGTGTATTTAAAGGTCCGAAAAAATAACGCA
CGGGGATATGGGTTGTACGCGTCGCTGGGGTACCAGGTGCTGTGGGAGTG
GCCTGGGGAAGGGGTGTGGTTGATGAGGAAGTGGGTAATGGATGAGGGGG
AAGAAGCACGGGAGGAGGCGGAGAAGAAAGAGAGGGAGGACTGTCAGATG
ATGGTGGGGACAGTGATGATGCCATGTATGAATTGGGTGGAAGGGGAGGT
GAAAGACGTGGTGGAGGGAAGGAAAGAGGAGGGGGTGAAGGATGAGGGGG
AGTAG
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protein sequence of NO04G00960.1

>NO04G00960.1-protein ID=NO04G00960.1-protein|Name=NO04G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MTKRTRPPLPPPPFLSFSLPLFLLLQIILDAATAFLLPLPTHPPRLRQPF
PPPYATTTSSPNNNNDDVSPCLPTSSSFTYSSSIPTRTRLCVRPANKADL
RRVATMQVAEYGGDGILFFWHYLQELDRLQTSYWVEPVRHTMLVLVDDSS
SSPSSLSPSSSSFPFSPLSVALRALDNFFLGDPRIVGFVDLDARERRVDK
TTPDPYLSDLIVDASRRGQGLGKALMLEAEAEAERWGFPAVYLKVRKNNA
RGYGLYASLGYQVLWEWPGEGVWLMRKWVMDEGEEAREEAEKKEREDCQM
MVGTVMMPCMNWVEGEVKDVVEGRKEEGVKDEGE*
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Synonyms
Publications