NO04G00950, NO04G00950 (gene) Nannochloropsis oceanica

Overview
NameNO04G00950
Unique NameNO04G00950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1104
Alignment locationchr4:306511..307614 -

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Properties
Property NameValue
DescriptionProgrammed cell death protein 5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:306511..307614 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036883PDCD5-like_sf
IPR002836PDCD5-related
Homology
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: XP_010538238.1 (PREDICTED: DNA-binding protein DDB_G0278111 isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 77.0 bits (188), Expect = 5.100e-11
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ +KAR VED+LL+AA +G++  KV+EE+LI +LEQ++SQ  K+ TKV
Sbjct:   45 RRQMMLTQILSSEARERLARIALVKPDKARGVEDVLLRAAQTGQIVEKVSEERLISLLEQINSQTTKR-TKV 115
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: XP_010538239.1 (PREDICTED: DNA-binding protein DDB_G0278111 isoform X2 [Tarenaya hassleriana] >XP_010538240.1 PREDICTED: DNA-binding protein DDB_G0278111 isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 77.0 bits (188), Expect = 5.100e-11
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ +KAR VED+LL+AA +G++  KV+EE+LI +LEQ++SQ  K+ TKV
Sbjct:   32 RRQMMLTQILSSEARERLARIALVKPDKARGVEDVLLRAAQTGQIVEKVSEERLISLLEQINSQTTKR-TKV 102
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: XP_016723992.1 (PREDICTED: DNA-binding protein DDB_G0278111-like isoform X1 [Gossypium hirsutum] >XP_017647276.1 PREDICTED: DNA-binding protein DDB_G0278111 isoform X1 [Gossypium arboreum])

HSP 1 Score: 77.0 bits (188), Expect = 5.100e-11
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKAR VED+LL+AA +G++  KV+EE+LI +LEQ+++Q  K+ TKV
Sbjct:   45 RRQMMLSQILSSEARERLARIALVKPEKARGVEDVLLRAAQTGQIVEKVSEERLISLLEQINTQTTKQ-TKV 115
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: PPR90954.1 (hypothetical protein GOBAR_AA29730 [Gossypium barbadense])

HSP 1 Score: 77.0 bits (188), Expect = 5.100e-11
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKAR VED+LL+AA +G++  KV+EE+LI +LEQ+++Q  K+ TKV
Sbjct:   32 RRQMMLSQILSSEARERLARIALVKPEKARGVEDVLLRAAQTGQIVEKVSEERLISLLEQINTQTTKQ-TKV 102
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: XP_006369891.1 (DNA-binding protein DDB_G0278111 [Populus trichocarpa] >ABK95623.1 unknown [Populus trichocarpa] >PNT58414.1 hypothetical protein POPTR_001G352600v3 [Populus trichocarpa])

HSP 1 Score: 76.6 bits (187), Expect = 6.600e-11
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKAR VED++L+AA  G++  KV+EE+LI MLEQ+++Q  K+ TKV
Sbjct:   45 RRQMMLSQILSSEARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLISMLEQINNQTTKQ-TKV 115
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: XP_008900903.1 (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >XP_008900904.1 hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >ETI53332.1 hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETI53333.1 hypothetical protein, variant 2 [Phytophthora parasitica P1569] >ETK93181.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETK93182.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETM52884.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM52885.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETN13836.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETN13837.1 hypothetical protein, variant 2 [Phytophthora parasitica INRA-310])

HSP 1 Score: 76.6 bits (187), Expect = 6.600e-11
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 0 
Query:   49 RQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RQ ++ Q++LP+A+ERLARIAIV+ EKARA+EDM++Q A  G+L  K+ E++LI +L QV    EK+ TKV
Sbjct:   11 RQSLVQQVMLPDARERLARIAIVKPEKARAIEDMVIQMAQRGQLAAKIDEDKLIDLLNQVGVTEEKQRTKV 81
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: ETL46598.1 (hypothetical protein, variant 1 [Phytophthora parasitica] >ETL46599.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETL99738.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL99739.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETO82011.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETO82012.1 hypothetical protein, variant 2 [Phytophthora parasitica P1976] >ETP23121.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >ETP23122.1 hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >ETP51131.1 hypothetical protein, variant 1 [Phytophthora parasitica P10297] >ETP51132.1 hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 76.6 bits (187), Expect = 6.600e-11
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 0 
Query:   49 RQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RQ ++ Q++LP+A+ERLARIAIV+ EKARA+EDM++Q A  G+L  K+ E++LI +L QV    EK+ TKV
Sbjct:   11 RQSLVQQVMLPDARERLARIAIVKPEKARAIEDMVIQMAQRGQLAAKIDEDKLIDLLNQVGVTEEKQRTKV 81
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: XP_011005854.1 (PREDICTED: DNA-binding protein DDB_G0278111 [Populus euphratica])

HSP 1 Score: 76.6 bits (187), Expect = 6.600e-11
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKAR VED++L+AA  G++  KV+EE+LI MLEQ+++Q  K+ TKV
Sbjct:  116 RRQMMLSQILSSEARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLISMLEQINNQTTKQ-TKV 186
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: PNT58413.1 (hypothetical protein POPTR_001G352600v3 [Populus trichocarpa])

HSP 1 Score: 76.6 bits (187), Expect = 6.600e-11
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKAR VED++L+AA  G++  KV+EE+LI MLEQ+++Q  K+ TKV
Sbjct:   23 RRQMMLSQILSSEARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLISMLEQINNQTTKQ-TKV 93
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: EOY27790.1 (Double-stranded DNA-binding family protein [Theobroma cacao])

HSP 1 Score: 76.3 bits (186), Expect = 8.700e-11
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ER+ARIA+V+ EKAR VED+LL+AA  G++  KV+EE+LI MLEQ+++Q  K+ TKV
Sbjct:  159 RRQMMLSQILSSEARERVARIALVKPEKARGVEDVLLRAAQMGQIVEKVSEERLISMLEQINTQTTKQ-TKV 229
The following BLAST results are available for this feature:
BLAST of NO04G00950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_010538238.15.100e-1161.11PREDICTED: DNA-binding protein DDB_G0278111 isofor... [more]
XP_010538239.15.100e-1161.11PREDICTED: DNA-binding protein DDB_G0278111 isofor... [more]
XP_016723992.15.100e-1161.11PREDICTED: DNA-binding protein DDB_G0278111-like i... [more]
PPR90954.15.100e-1161.11hypothetical protein GOBAR_AA29730 [Gossypium barb... [more]
XP_006369891.16.600e-1161.11DNA-binding protein DDB_G0278111 [Populus trichoca... [more]
XP_008900903.16.600e-1154.93hypothetical protein, variant 1 [Phytophthora para... [more]
ETL46598.16.600e-1154.93hypothetical protein, variant 1 [Phytophthora para... [more]
XP_011005854.16.600e-1161.11PREDICTED: DNA-binding protein DDB_G0278111 [Popul... [more]
PNT58413.16.600e-1161.11hypothetical protein POPTR_001G352600v3 [Populus t... [more]
EOY27790.18.700e-1161.11Double-stranded DNA-binding family protein [Theobr... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005007NSK005007Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00950.1NO04G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578262gene_1874Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100617g2gene2123Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00950.1NO04G00950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00950 ID=NO04G00950|Name=NO04G00950|organism=Nannochloropsis oceanica|type=gene|length=1104bp
ATGGAACCGGCGGGGGAGATAGACTTGCCTCCTGGCTTCACACCGGCGGG
AGGAGGAGGAATGGGAGGGATGATAGGGGGCGGAGGCATGTCGCAAGAGG
CGGCAGAGGCACAAAAAGCCAAGgtgcgtccttgtgatggtagaaagaca
gggaagaggagaataaggtagacataataaagaggtgttgttactcgcat
gccaatcatctgtgcgccgccctattcaattaactctcctttccgcttcc
tcatttctccctttccacacacagCAAGCCGAGATGGAGGAGCGGAGGCA
ATTCATGCTTGACCAGATTTTGCTGCCAGAGGCGAAGGAGCGCTTAGCCC
GGATAGgtaagtgggtgggcggtgggtataaatcgtttattctgatagag
cacggaatacgaggagcctttctgtttgtgatggccgagtgttcgagcag
aacatttccccctttttggaaagaatagacgacaaagccttccatctaga
gataaggctgcctggaagctctttacaatggtcaccctttctcttccgat
gggccagtggagggaatttggtgagctggagaggctgcggtgtaggcctt
gtgccgagattgggcgtttggatatcgttttcttacatcattgtcaagaa
gggacttgagtgctgtatcgagatatatgcacttggaatatccttgaaaa
tctgaacgaaaatttggaaagctatctccgaaagagagggatgtagatga
tatgtctgattggagtgcgtgctccccaatcttatgtcttcccctgtgcc
gattttcagtattgtatccgcccccgacgcgctagtgcacctcatctaca
tattttctttcccccccgcattcatttatgatttcacagCGATCGTCCGC
AAAGAGAAAGCCCGTGCCGTAGAGGACATGCTCTTGCAAGCCGCGACCTC
AGGCAGGCTCGGTGGGAAGGTGACCGAAGAGCAGCTCATTCAGATGCTCG
AGCAGGTATCGTCTCAAGTGGAGAAGAAAGCCACCAAAGTCACCATCCAA
CGGCGGCGGTACTTGGACGAAGACGATGACGACAATGACGACGACTTGTT
GTAG
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protein sequence of NO04G00950.1

>NO04G00950.1-protein ID=NO04G00950.1-protein|Name=NO04G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MEPAGEIDLPPGFTPAGGGGMGGMIGGGGMSQEAAEAQKAKQAEMEERRQ
FMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQ
LIQMLEQVSSQVEKKATKVTIQRRRYLDEDDDDNDDDLL*
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Synonyms
Publications