NO04G00950, NO04G00950 (gene) Nannochloropsis oceanica

Overview
NameNO04G00950
Unique NameNO04G00950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1104
Alignment locationchr4:306511..307614 -

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Properties
Property NameValue
DescriptionProgrammed cell death protein 5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:306511..307614 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036883PDCD5-like_sf
IPR002836PDCD5-related
Homology
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: EWM28461.1 (programmed cell death protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 131.7 bits (330), Expect = 1.700e-27
Identity = 78/119 (65.55%), Postives = 84/119 (70.59%), Query Frame = 0 
Query:    1 MEPAGEIDLPPGFTPAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            MEPAGE+DLPPGFT AG                              RRQFMLDQIL PEAKERLARIAIVRKEK R V+DML+QAATSGRL GKV+EEQLI+MLEQVSSQV+KKATKV
Sbjct:    1 MEPAGELDLPPGFTAAGA--GMSGAGGRGMSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKV 117
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: CBJ30258.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.0 bits (206), Expect = 4.200e-13
Identity = 47/68 (69.12%), Postives = 59/68 (86.76%), Query Frame = 0 
Query:   52 MLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            +LDQI+  EA+ RL+ IA+V+ +KAR VE+ML+ AATSG+LGGKVTE+Q IQMLEQVSSQ+EKK TKV
Sbjct:   45 ILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQVSSQMEKK-TKV 111
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BLAST of NO04G00950 vs. NCBI_GenBank
Match: OWM73044.1 (hypothetical protein CDL15_Pgr001158 [Punica granatum])

HSP 1 Score: 82.8 bits (203), Expect = 9.300e-13
Identity = 46/72 (63.89%), Postives = 61/72 (84.72%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QILLPEA+ERLARIA+V+ EKAR+VED++L+AA  G++  KVTEE+LI +LEQ+++Q  K+ TKV
Sbjct:   32 RRQMMLSQILLPEARERLARIALVKPEKARSVEDVILRAAQMGQIVEKVTEERLISLLEQINTQTTKQ-TKV 102
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: PKH47965.1 (hypothetical protein CRG98_050391 [Punica granatum])

HSP 1 Score: 82.8 bits (203), Expect = 9.300e-13
Identity = 46/72 (63.89%), Postives = 61/72 (84.72%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QILLPEA+ERLARIA+V+ EKAR+VED++L+AA  G++  KVTEE+LI +LEQ+++Q  K+ TKV
Sbjct:   47 RRQMMLSQILLPEARERLARIALVKPEKARSVEDVILRAAQMGQIVEKVTEERLISLLEQINTQTTKQ-TKV 117
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: XP_012456994.1 (PREDICTED: DNA-binding protein DDB_G0278111 isoform X1 [Gossypium raimondii] >XP_016697099.1 PREDICTED: DNA-binding protein DDB_G0278111-like isoform X1 [Gossypium hirsutum] >KJB68844.1 hypothetical protein B456_011G041300 [Gossypium raimondii])

HSP 1 Score: 78.2 bits (191), Expect = 2.300e-11
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKAR VED+LL+AA +G++  KV+EE+LI +LEQ+++Q  K+ TKV
Sbjct:   45 RRQMMLSQILSSEARERLARIALVKPEKARGVEDVLLRAAQTGQIAEKVSEERLISLLEQINTQTTKQ-TKV 115
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: KJB68846.1 (hypothetical protein B456_011G041300 [Gossypium raimondii])

HSP 1 Score: 78.2 bits (191), Expect = 2.300e-11
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKAR VED+LL+AA +G++  KV+EE+LI +LEQ+++Q  K+ TKV
Sbjct:   45 RRQMMLSQILSSEARERLARIALVKPEKARGVEDVLLRAAQTGQIAEKVSEERLISLLEQINTQTTKQ-TKV 115
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: XP_012456996.1 (PREDICTED: DNA-binding protein DDB_G0278111 isoform X3 [Gossypium raimondii] >KJB68850.1 hypothetical protein B456_011G041300 [Gossypium raimondii])

HSP 1 Score: 78.2 bits (191), Expect = 2.300e-11
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKAR VED+LL+AA +G++  KV+EE+LI +LEQ+++Q  K+ TKV
Sbjct:   32 RRQMMLSQILSSEARERLARIALVKPEKARGVEDVLLRAAQTGQIAEKVSEERLISLLEQINTQTTKQ-TKV 102
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: PPD68676.1 (hypothetical protein GOBAR_DD34446 [Gossypium barbadense])

HSP 1 Score: 78.2 bits (191), Expect = 2.300e-11
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKAR VED+LL+AA +G++  KV+EE+LI +LEQ+++Q  K+ TKV
Sbjct:   32 RRQMMLSQILSSEARERLARIALVKPEKARGVEDVLLRAAQTGQIAEKVSEERLISLLEQINTQTTKQ-TKV 102
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: XP_013457327.1 (DNA-binding protein DDB_G0278111 [Medicago truncatula] >AFK49045.1 unknown [Medicago truncatula] >KEH31358.1 double-stranded DNA-binding-like protein [Medicago truncatula])

HSP 1 Score: 77.8 bits (190), Expect = 3.000e-11
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ EKA+ VED++L+AA  G++  KVTEE+LI +LEQ++SQ  K+ TKV
Sbjct:   46 RRQMMLSQILSAEARERLARIALVKPEKAKGVEDVILRAAQMGQIAEKVTEERLITLLEQINSQTAKQ-TKV 116
[Close]
BLAST of NO04G00950 vs. NCBI_GenBank
Match: XP_020092499.1 (DNA-binding protein DDB_G0278111 isoform X1 [Ananas comosus] >XP_020092507.1 DNA-binding protein DDB_G0278111 isoform X2 [Ananas comosus])

HSP 1 Score: 77.4 bits (189), Expect = 3.900e-11
Identity = 43/72 (59.72%), Postives = 59/72 (81.94%), Query Frame = 0 
Query:   48 RRQFMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQLIQMLEQVSSQVEKKATKV 120
            RRQ ML QIL  EA+ERLARIA+V+ +KAR VED+LL+AA +G++  KV+EE+LI +LEQ+++Q  K+ TKV
Sbjct:   45 RRQMMLSQILSAEARERLARIALVKPDKARGVEDVLLRAAQTGQISEKVSEERLISLLEQINTQTSKQ-TKV 115
The following BLAST results are available for this feature:
BLAST of NO04G00950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28461.11.700e-2765.55programmed cell death protein 5 [Nannochloropsis g... [more]
CBJ30258.14.200e-1369.12conserved unknown protein [Ectocarpus siliculosus][more]
OWM73044.19.300e-1363.89hypothetical protein CDL15_Pgr001158 [Punica grana... [more]
PKH47965.19.300e-1363.89hypothetical protein CRG98_050391 [Punica granatum... [more]
XP_012456994.12.300e-1161.11PREDICTED: DNA-binding protein DDB_G0278111 isofor... [more]
KJB68846.12.300e-1161.11hypothetical protein B456_011G041300 [Gossypium ra... [more]
XP_012456996.12.300e-1161.11PREDICTED: DNA-binding protein DDB_G0278111 isofor... [more]
PPD68676.12.300e-1161.11hypothetical protein GOBAR_DD34446 [Gossypium barb... [more]
XP_013457327.13.000e-1161.11DNA-binding protein DDB_G0278111 [Medicago truncat... [more]
XP_020092499.13.900e-1159.72DNA-binding protein DDB_G0278111 isoform X1 [Anana... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005007NSK005007Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00950.1NO04G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578262gene_1874Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100617g2gene2123Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00950.1NO04G00950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00950 ID=NO04G00950|Name=NO04G00950|organism=Nannochloropsis oceanica|type=gene|length=1104bp
ATGGAACCGGCGGGGGAGATAGACTTGCCTCCTGGCTTCACACCGGCGGG
AGGAGGAGGAATGGGAGGGATGATAGGGGGCGGAGGCATGTCGCAAGAGG
CGGCAGAGGCACAAAAAGCCAAGgtgcgtccttgtgatggtagaaagaca
gggaagaggagaataaggtagacataataaagaggtgttgttactcgcat
gccaatcatctgtgcgccgccctattcaattaactctcctttccgcttcc
tcatttctccctttccacacacagCAAGCCGAGATGGAGGAGCGGAGGCA
ATTCATGCTTGACCAGATTTTGCTGCCAGAGGCGAAGGAGCGCTTAGCCC
GGATAGgtaagtgggtgggcggtgggtataaatcgtttattctgatagag
cacggaatacgaggagcctttctgtttgtgatggccgagtgttcgagcag
aacatttccccctttttggaaagaatagacgacaaagccttccatctaga
gataaggctgcctggaagctctttacaatggtcaccctttctcttccgat
gggccagtggagggaatttggtgagctggagaggctgcggtgtaggcctt
gtgccgagattgggcgtttggatatcgttttcttacatcattgtcaagaa
gggacttgagtgctgtatcgagatatatgcacttggaatatccttgaaaa
tctgaacgaaaatttggaaagctatctccgaaagagagggatgtagatga
tatgtctgattggagtgcgtgctccccaatcttatgtcttcccctgtgcc
gattttcagtattgtatccgcccccgacgcgctagtgcacctcatctaca
tattttctttcccccccgcattcatttatgatttcacagCGATCGTCCGC
AAAGAGAAAGCCCGTGCCGTAGAGGACATGCTCTTGCAAGCCGCGACCTC
AGGCAGGCTCGGTGGGAAGGTGACCGAAGAGCAGCTCATTCAGATGCTCG
AGCAGGTATCGTCTCAAGTGGAGAAGAAAGCCACCAAAGTCACCATCCAA
CGGCGGCGGTACTTGGACGAAGACGATGACGACAATGACGACGACTTGTT
GTAG
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protein sequence of NO04G00950.1

>NO04G00950.1-protein ID=NO04G00950.1-protein|Name=NO04G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MEPAGEIDLPPGFTPAGGGGMGGMIGGGGMSQEAAEAQKAKQAEMEERRQ
FMLDQILLPEAKERLARIAIVRKEKARAVEDMLLQAATSGRLGGKVTEEQ
LIQMLEQVSSQVEKKATKVTIQRRRYLDEDDDDNDDDLL*
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Synonyms
Publications