NO04G00940, NO04G00940 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G00940 vs. NCBI_GenBank
Match: EWM28459.1 (hypothetical protein Naga_100617g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 300.4 bits (768), Expect = 2.200e-77 Identity = 190/421 (45.13%), Postives = 232/421 (55.11%), Query Frame = 0
Query: 115 VGRGDAGGGPRSPTSSFSRSPAGP----KPRSFSHQNFEKHNHASTHRTSPQNSGSTRGSSNRTYHGKSKNLQQQQRLQRPHQAQ-YKHGGHHSNNNSHGVSA------IHIEINKELLRRGEDPEALLSYADRMGQSLNGVNVATCLNRLSKAATPRSNPPLQALLQDPRFVRLVAQAQSLLPQCQAAELSIMLNGISKLGVDPGPTFWTASRDLSLALLPSFNHNAHFVQLLNAYGRQKFPPGTEWVAAFLASSYPFIPSCNSRELASLLNSLGNLRVGGVGREYMERLRDGVLKMLERGAMQPREIATCLNGFGKVAAWSELSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTTTAVPAAADVRFHPGSPLLKAFAAASFPVLDSFGPQGLAGLVNGFAHLDYCPG 525
VGRG R+P+SS + P+ H + ++ ST R+SP + T GK +L RP +AQ G + N G H +INKELLRRG D E LL YAD MG +N VNVATCLNRLSKA +PR P + QDPR RL+ + LP+CQAAELSI+LNG+SKLG+DPGP FW SRDLSLALLP+ + NAHFVQ+LNAY R +FPPG WV AF+ +S P +PS +RELASL+NSLGNLR GV Y+ RLRD VL ++ G M RE+ATCL+GFGK+A L P+ FHPG PLL A ASFP+L++F PQGLA L+NGF HL YCPG
Sbjct: 108 VGRG------RTPSSSLPVASGDTALLLPPKKTRHAAWHRNMDISTKRSSPVATKKT------PRLGKPAHLP-----GRPPRAQDGPRTGPRTQQNGTGAGGTAFTLPCHRDINKELLRRGADAEKLLKYADAMGVGMNSVNVATCLNRLSKAWSPRHGPTRPSPAQDPRLRRLLLHTHTCLPECQAAELSIILNGVSKLGLDPGPGFWRTSRDLSLALLPTLDQNAHFVQILNAYSRARFPPGQAWVQAFVLASAPSLPSWTARELASLVNSLGNLRPAGVHCAYLTRLRDAVLACVQGGGMPARELATCLSGFGKMATGPHLPP---------------------------------------------PSPCAPAFHPGRPLLDAMVEASFPLLETFDPQGLAALINGFVHLRYCPG 466
BLAST of NO04G00940 vs. NCBI_GenBank
Match: EWM28464.1 (hypothetical protein Naga_100190g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 97.4 bits (241), Expect = 2.900e-16 Identity = 61/139 (43.88%), Postives = 77/139 (55.40%), Query Frame = 0
Query: 738 RYDPGGAFLATLTEAAVRKAXXXXXXXXXXXXXXXXXXXXXXXXXFWEACRQVIPWPKLLSSLSLFEASTLLYALAVMDMEESQTLMGPLVKRACEEMKRTRGKARERARKKEMDLETESALRQLHQTFLYLECLRREQ 877
R P AFL T EAA+ +A +W ACR+ + ++LSSLSLFE STLL+ALAVMD+EES++L+ PLV RA EEM+R SALRQLHQT+LYL+ LRRE+
Sbjct: 11 RQPPFPAFLDTFVEAAIAQAGYFDQQHLANFWLGCANLNYGPSKAYWAACREALEGDRVLSSLSLFETSTLLHALAVMDVEESRSLLAPLVGRATEEMRRXXXXXXXXXXXXXXXXXXXSALRQLHQTYLYLQVLRRER 149
BLAST of NO04G00940 vs. NCBI_GenBank
Match: EWM30244.1 (RAP domain protein [Nannochloropsis gaditana]) HSP 1 Score: 91.7 bits (226), Expect = 1.600e-14 Identity = 54/148 (36.49%), Postives = 77/148 (52.03%), Query Frame = 0
Query: 907 FGDLIGEVWDESSHLISVRIRTSAFQKDV-QVTAEGLGLCCLPEARDGPFTLDMVVVPAPAGEWEGGKEGEEALPLVVEVDGPTHYLINVPEQMTGTSRLKHRLLAAQRHRWAGVVSISLPEWSQGGYSATK--KKSILLKKFREAGV 1052
F L+ + W E + TS F +DV V + LGL C E D +TLDMV+ P G LP+VVE DGP H+ N P++ G + KHRLL + RW VVS+S EW + S ++ + ++L++K R AG+
Sbjct: 846 FSSLLEKKWAEIQR-EKYEVHTSYFHRDVLAVVTKSLGLRCDIEVEDEAYTLDMVIYPTDGG-----------LPVVVEADGPHHFFRNQPDEAMGFTVFKHRLLQGRSDRWRAVVSVSQAEWQRAKESDSQRGRTALLIEKLRGAGL 981
BLAST of NO04G00940 vs. NCBI_GenBank
Match: EWM29914.1 (hypothetical protein Naga_100035g39 [Nannochloropsis gaditana]) HSP 1 Score: 82.0 bits (201), Expect = 1.200e-11 Identity = 51/177 (28.81%), Postives = 88/177 (49.72%), Query Frame = 0
Query: 901 LAGLRSFGDLIGEVWDESSHLISVRIRTSAFQKDV-QVTAEGLGLCCLPEARDGPFTLDMVVVP------APAGEWEGGKEGEE-------ALPLVVEVDGPTHYLINVPEQMTGTSRLKHRLLAAQR------------HRWAGVVSISLPEWSQGGYSATKKKSILLKKFREAGV 1052
+ G ++ L+ W +HL + ++ Q+ + +T G+ + +G F+LD+V+ P + + +GEE ALP+VVEVDGP+HY++N+P+ +TG + K R+L QR RWA V+S+ L EW + G K ++L +K + G+
Sbjct: 1173 IPGSKALYSLVIRAWGHVAHLREPPVPSALHQQVMGTLTLAGVSYRAEEKVCEGTFSLDLVLFPRGNCRNCSSDRNKSVLDGEEASHSSRVALPVVVEVDGPSHYMVNMPDMLTGDTMFKRRMLLGQRSLRKDEGAHAPSQRWAAVLSLLLWEWEEVGPRYQNKIALLRRKLKAEGL 1349
BLAST of NO04G00940 vs. NCBI_GenBank
Match: EWM30309.1 (RAP domain protein [Nannochloropsis gaditana]) HSP 1 Score: 73.6 bits (179), Expect = 4.400e-9 Identity = 41/133 (30.83%), Postives = 75/133 (56.39%), Query Frame = 0
Query: 926 IRTSAFQKDVQVTAEGLGLCCLPEARDGPFTLDMVVVPAP---AGEWEGGKE----GEEALPLVVEVDGPTHYLINVPEQMTGTSRLKHRLLAAQRHRWAGVVSISLPEWSQGGYSATKKKSILLKKFREAGV 1052
+R+S Q +V+ T G C E D T+D+ + P P + + EG +E G P+ +EVDGP+H+ +N P++ TG +++KH+ L +W+ V+S++ EW + S+ ++ ++L KK + G+
Sbjct: 438 VRSSRLQMEVESTLRYGGAYCTGEWEDEVVTVDVALHPRPMSGSEDAEGAREDRRGGRRVRPVALEVDGPSHFFVNQPQRPTGDTKIKHQALHL-GGQWSAVISLAHFEWPK---SSKQQLAVLKKKIAQTGL 566 The following BLAST results are available for this feature:
BLAST of NO04G00940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G00940 ID=NO04G00940|Name=NO04G00940|organism=Nannochloropsis oceanica|type=gene|length=3737bpback to top protein sequence of NO04G00940.1 >NO04G00940.1-protein ID=NO04G00940.1-protein|Name=NO04G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1101bpback to top Synonyms
Publications
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