NO04G00920, NO04G00920 (gene) Nannochloropsis oceanica

Overview
NameNO04G00920
Unique NameNO04G00920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1112
Alignment locationchr4:300510..301621 +

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Properties
Property NameValue
DescriptionGolgi apparatus membrane protein TVP15
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:300510..301621 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013714Golgi_TVP15
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO04G00920 vs. NCBI_GenBank
Match: EWM28473.1 (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 327.8 bits (839), Expect = 3.100e-86
Identity = 170/267 (63.67%), Postives = 205/267 (76.78%), Query Frame = 0 
Query:    5 DIETQQQQH---------EPSWMREEAAGEAVGASAQPHPS-FAASNAYSQQHESTPLR-SAPSSVASSVGRPYKRAVMHRPYLHPRDIRRGFCLNVFIAINAVTVLSALSVAVAEILSIIYHDLSPQAVAIRVYGVIFAFGVIFTEMGWTQAIRDTWLLQNWVSRGAIYTFVGLLALEQEAERRAAVNLANLFIFFAGLGLVGLXXXXXXXXXXXXXXXRDRKAADYTICRSQAELEEALRRHGDTGKEDVETIPSSYQAGGGGGY 261
            D +T   QH         EPSWM E+AAGEA GA+AQP+PS     + +  QHE+TPLR SAPSSVASS GRP K   M+RPYL  +DIRRG CL++F+AINAV VLSALSVAVAEILSI+YH LSP  +AIRVYG++F+ GV+FTE+GWTQA+RDTWLLQNW+SRGAIYTFVGLL+++QE E  A +N+ N+FI+ AGLGL+GL               RDR+AADYTI +SQAELEEALRRHGD GK+D+E  PS+YQAGGGGG+
Sbjct:   16 DTDTNHYQHQQYHRGTNPEPSWMHEQAAGEAAGAAAQPYPSXXXXXHTHQNQHETTPLRGSAPSSVASSAGRPSKHGAMYRPYLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGDVGKDDLEDAPSTYQAGGGGGF 282
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BLAST of NO04G00920 vs. NCBI_GenBank
Match: CBN77586.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 107.8 bits (268), Expect = 5.100e-20
Identity = 58/165 (35.15%), Postives = 96/165 (58.18%), Query Frame = 0 
Query:   76 YLHPRDIRRGFCLNVFIAINAVTVLSALSVAVAEILSIIYH-DLSPQAVAIRVYGVIFAFGVIFTEMGWTQAIRDTWLLQNWVSRGAIYTFVGLLALEQEAERRAAVNLANLFIFFAGLGLVGLXXXXXXXXXXXXXXXRDRKAADYTICRSQAELEEALRRHGD 240
            Y   R +RRG  L+  + +NA+TV++AL V VA+ + + YH DLSP++VA+R Y ++F   +I  E+ WT  +R+ ++L +W+ RG +Y+FVG+L LE+E E+   +    L+I      +VG+               RD+K A +    + AE++ A+RR  D
Sbjct:    4 YSGVRTVRRGCLLDSLLLLNAITVIAALGVGVAQGMVLGYHKDLSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYSFVGVLVLEEEDEKGLDLGGFGLYITIIAWIMVGIGALYFLLGLCCVKRIRDKKMARHKTLVAHAEMQAAMRRDHD 168
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BLAST of NO04G00920 vs. NCBI_GenBank
Match: XP_005852601.1 (hypothetical protein NGA_0712000 [Nannochloropsis gaditana CCMP526] >EKU23232.1 hypothetical protein NGA_0712000 [Nannochloropsis gaditana CCMP526] >EWM21558.1 Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 72.0 bits (175), Expect = 3.100e-9
Identity = 49/170 (28.82%), Postives = 85/170 (50.00%), Query Frame = 0 
Query:   70 AVMHRPYLHPRD-IRRGFCLNVFIAINAVTVLSALSVAVAEILSIIYHDLSPQAV---AIRVYGVIFAFGVIFTEMGWTQAIRDTWLLQNWVSRGAIYTFVGLLALEQEAERRAAVNLANLFIFFAGLGLVGLXXXXXXXXXXXXXXXRDRKAADYTICRSQAELEEALR 236
            A  + P  H RD +R    L +F  IN +T+++A+  A+AE+LS+IY    P+ +    +R+Y + F   ++ +E+ W++ +RD+ +  +W  RGA   FV  L  E +        +   FI FA + L+ +               RD + A Y   R+ AE+ +AL+
Sbjct:   11 ATPNPPPGHVRDRVRAHAALKIFTVINWITIIAAILAAIAELLSLIY--TKPRTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQPGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQ 178
The following BLAST results are available for this feature:
BLAST of NO04G00920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28473.13.100e-8663.67Golgi apparatus membrane protein TVP15 [Nannochlor... [more]
CBN77586.15.100e-2035.15conserved unknown protein [Ectocarpus siliculosus][more]
XP_005852601.13.100e-928.82hypothetical protein NGA_0712000 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005012NSK005012Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00920.1NO04G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578251gene_1872Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100190g3gene2119Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00920.1NO04G00920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00920 ID=NO04G00920|Name=NO04G00920|organism=Nannochloropsis oceanica|type=gene|length=1112bp
ATGCGCACGACTGACATAGAGACGCAACAACAGCAACACGAGCCGTCGTG
GATGCGGGAAGAGGCTGCTGGAGAAGCTGTCGGCGCCTCTGCTCAACCTC
ACCCGTCCTTTGCCGCCTCGAACGCCTACTCGCAGCAGCACGAGTCCACG
CCCTTGCGCAGTGCCCCTTCCTCCGTTGCGTCCTCGGTTGGGCGGCCTTA
CAAACGAGCTGTCATGCATCGTCCCTATCTTCACCCAAGAGACATCCGCC
GCGGCTTTTGCTTGAACGTTTTCATCGCCATAAACGCTGTAACTGTGCTA
AGCGCGCTCTCCGTAGCAGTAGCAGAAATTCTATCCATTATTTATCACGA
CCTTTCGCCGCAGGCAGTAGCCATTCGCGTTTATGGTGTCATTTTTGCAT
TTGGCGTAATTTTCACGGAGATGGGATGGACGCAGgtttgtgaatggaaa
tggagggagggagggatattccaagtagagcaaggacgtgaaaggaaagt
catgggagagaaaaactgtacttcatcgtagatatcttgcatttagcttg
tcactcatcgcatctttgcctcccttgtcctccatgcacagGCGATTCGA
GACACGTGGCTATTGCAGAACTGGGTTAGCCGTGGGgtaagttaatttgt
atatctgactgagaggaaacaggatacacgtcgcgtagagatagagaggc
cactgtatatgtgcgatcggaaaatatcatccgccatactgcttcaccgc
gttcttacatcgttttctccctccctcccctgcctccctgtcagGCAATC
TACACCTTTGTCGGCCTCCTGGCTCTAGAGCAGGAAGCCGAACGCAGGGC
TGCCGTCAACTTGGCCAATCTTTTTATTTTTTTCGCTGGTCTAGGCCTCG
TGGGCCTCGGAATTCTCTACTTTTTCATGGGCATCTTGTGTTTGAAAGGA
GTGCGAGATCGAAAGGCGGCAGACTATACCATTTGCCGCTCCCAGGCGGA
GCTGGAGGAGGCGTTAAGGAGGCATGGGGATACCGGGAAGGAGGATGTGG
AGACGATTCCCTCGTCTTACCAAGCGGGCGGTGGGGGAGGCTACACAAAT
GTGGTCATTTAG
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protein sequence of NO04G00920.1

>NO04G00920.1-protein ID=NO04G00920.1-protein|Name=NO04G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MRTTDIETQQQQHEPSWMREEAAGEAVGASAQPHPSFAASNAYSQQHEST
PLRSAPSSVASSVGRPYKRAVMHRPYLHPRDIRRGFCLNVFIAINAVTVL
SALSVAVAEILSIIYHDLSPQAVAIRVYGVIFAFGVIFTEMGWTQAIRDT
WLLQNWVSRGAIYTFVGLLALEQEAERRAAVNLANLFIFFAGLGLVGLGI
LYFFMGILCLKGVRDRKAADYTICRSQAELEEALRRHGDTGKEDVETIPS
SYQAGGGGGYTNVVI*
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Synonyms
Publications