NO04G00900, NO04G00900 (gene) Nannochloropsis oceanica

Overview
NameNO04G00900
Unique NameNO04G00900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4369
Alignment locationchr4:293163..297531 -

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Properties
Property NameValue
DescriptionPentatricopeptide repeat-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:293163..297531 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO04G00900 vs. NCBI_GenBank
Match: EWM28474.1 (pentatricopeptide repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 324.7 bits (831), Expect = 1.200e-84
Identity = 234/736 (31.79%), Postives = 338/736 (45.92%), Query Frame = 0 
Query:  399 FEALAHRVTQAVQAKDLPAAMTHLRQLDALYLPSLPSSPISSSVRLLISGTAYAVLHLCLAERKRTEGEKGIEEALDVLTMPNLATSYDKACTRIAFTTLPITDTSSWPTTMAFFRKVLTYLTPAAWPAPHQFHRALRQLADAGQPTQCQWLLDRMRCP------QALAPPHEEGKEDRRQPSFLPPPPIPIGSAGQLHSPRWHLLKSYLYSHQPLQAVRLLQTEKNL-RLDCNTTNMVLKGLARERLGQDALNFLKWAEEEVGVKTTTESYNKVIIALAKTNRSFHPYASSSSFQRFPHPC---PPSADKDGHAISAPTAAVDAEADAASPIDTTAAAREVLARMNAKEILPDHVSYCALLDVYAEANDVKGAVAMFFGEMCQVGREGGGEGGKSGIMPTDVAFGTLMKAFARVGEWRKVLMCVEGMHELGITDEREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLMEGMDAYAYNLAMHICARNGDQGGALRWWGMMKEARRERGLDNFNVGALLTAFGAEGQWEEGLAFVEEVVLSTGRPVPDAALALLALRAAKAGRGEEVVERVLELLSKHQQSIPSFLHGAMCLALAESGQYAKGLGMALAEAPRKEQLRSAGMGEEEWREKVKEXXXXXXXXXSMDDYVRTQLAFVQLKQTPWPVAWCLVDGLEAQGLLHSTAVEVATEALARKDGYELF 1125
            ++ LA  V  AV  +D+ +AMT L +++ +  P  P S   S    L+  T +A L LC    ++T G KG+ EAL +L++ NLA S+D ACTR+ F+ LP +  + W TT          L   A+P+      ALRQ A+AG+P + +WLL RM+ P      +         +E +R       PP  +G  G+LHS  WHL K+YLY+ +P +A+ LL+TE +   LD  TTNM+LK L+R  L ++   F  WAE+   V+  TESY   I +LA+T+R              P  C   P +   DG         V    D ++       A  +LARM ++ + PD  ++ AL+DV+AEA D++G + +FFG+M +  R          + P    FG LMK  +R  EW KV+ C E M ELG++D +E                                                                  DL  GM+AY + + +H+CAR  D  G  RWW  M+    E   D +   A+L+A   +G W++GLAFV+ V       + + A+ALL LRAAKAGRG EV E V + L  H   I  FL   + +   E G +A+     +                  W E+++           +   V   LA V   +TPWPV+W LV  + AQGLL       A EAL  K+ + LF
Sbjct:  123 YDNLASEVMTAVVREDMASAMTSLERMNLIGHPGSPLSITGS----LVGATCHAFLSLCQRRHRQTSGGKGLGEALHILSLQNLAASFDMACTRLLFSLLPTSHPAQWSTTFKALDLAFANLPAVAYPSQSLKRTALRQFAEAGRPEEVRWLLTRMQEPFLALSSKTSRAARSRQREKKRGIGKESHPP-SLGEVGKLHSSAWHLFKAYLYAFRPTEALHLLRTETSPGMLDVETTNMLLKALSRHYLVEELFVFFAWAEKHAMVRLNTESYTHAIASLARTSRD-------------PKGCKGKPLTVSLDGETGPGAGRGVAGGTDCSN----QDQALSLLARMESQGLTPDVHTFVALIDVFAEAGDLEGGLEVFFGKMAKERR----------LRPDGAVFGKLMKLLSRRKEWEKVIACHEAMEELGLSDTKEVSTVMVMYAWEKMGKWGEVKDLLGRIHQREGGVRTLKTFTYAMHAFGVAGKYQQALACVREVERREDLHTGMNAYGHMMLVHVCARGQDWAGVQRWWQRMQVKGLEGEADQYLSCAVLSACAVKGAWDDGLAFVDRVGACASSSLAEEAMALLVLRAAKAGRGREVGEGVRKRLLDHGLPIGPFLTEVLAVVSGEEGGHAQEWEGVV----------------RRWYERMEGQREREMAGPDVAIEVLGDLAGV---RTPWPVSWYLVGDMAAQGLLKEREAARAVEALKEKEAFALF 807
The following BLAST results are available for this feature:
BLAST of NO04G00900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28474.11.200e-8431.79pentatricopeptide repeat-containing protein [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005014NSK005014Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00900.1NO04G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578242gene_1868Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100190g5gene2117Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00900.1NO04G00900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00900 ID=NO04G00900|Name=NO04G00900|organism=Nannochloropsis oceanica|type=gene|length=4369bp
ATGACCAAAAGCACCAGTATTTCGAATATCATTAGCAGCCGTAGCCTTGC
TACGTATTTCAAAGTCGAGGAAGAGCCCAAGCGTGCCCAGGAGAAAGGAT
TTAAGAAGCTCGTCAGCGAGTGGCCCGCCCCGCATGTCACGGTCAAGCCC
TTGTCCTCGGTTGTTATTGTTCCTGCTCCTTCTACTGACCCTTCTTCATC
TGTCTCCCCCACTATATTCCCTCCTCAATTCCATGGCAACCTGCAGCCAG
GGCCAACAAATGAACCCTCCCCTCTCGAAAAACACCGCGAGGAGCACGTC
ACCGATAGCACCGGCACCAGCACGAGCCAAAACAAAGCCCCAGGCACCTT
TCTCCTCGCTGACAAAAACTGGGCCGCCGGCTACGTCCTTGCCTCTCCTT
CATCCCCTTCCGCGGACCCGGTCCGCGAATCGTTTATTGCCAGGCTGGTG
GAGGGGGTGCAGGTAGCAATGCACAGCCACACCGGCCACTCCAGAATCCA
ATTGCTCTGCACACTGGATGGGGCAGAGACGTTCACTTGGCGCGAGGGAG
AAGCGGGGAATCAGGTGGCCCACATGGAACATTGGTCTTCGGCGGGTTCA
GGCATCTTTTGGGGAGCGCGGGAGTCGTATGCATTCGGAGATATCATCGA
Ggtaggtttgtaggaaggagggaggaatcagatgtagagactgcaggaat
attgtgctttattagacgtcaagtcaagtgcgcatcctcatttataactt
tggttatatcaatcgctttacatcagGTGCGGAGGGGCATCACTCCAGAC
CTCTCGAACCCGGGGGAGACGGGCACGGCTTCTTTGCGGGCAGCCTGCAA
AAATCGTGACTTGTCGAGATCCTTTTCTCTAATCACTGCGGATGGCACCA
TATATCTTTCCTGTGAGCAAGTGGAAACTGCATCGTTGTTAGTTAAAGGC
TTCATGGCTTTGTCGCATGAACAACGCCGGCGGCGCGTCCgtaggtcgag
ctgtgagaggggcctagggaagagagagaaaggagaagtgaattacagta
tagagagaaaggaaaagtgaattacagtataggaaggttacaaataagag
gatggtacggaatgctattggcaaacatgttacccggagcttcattcctt
cttcgccacctcagcgtattattctacgctccatgttttattttgttcag
ttttgccttgccaacccgtgatattgtactcacgagtacattcgcaattt
gtcccgtgtctgccacttgttttcaccacgtttgaccttctttcattacc
cgtaggcgcaacagcatcagagcacatagcccctcgcggtcccacataac
accacgcacgcacgaaacgaaacacatggcctccctgtggcggcccctcc
ggccccaagGCGCAAAAACAGCCCCCACTGCATCATTGCGCGTGCTGGCA
TCGTCGTTTCCCACCAATTTGACGgtacgttgatcgtcggttctcgggca
gcattggcagcttagggaaattcgcagtcaggcatatcaaatgtgttggt
ctctaaatgcgctctacgcaccaacacagACAAGCCGCGGTACAGATAAA
AAGAAGTCCTTCTCCTGTTTTGCGCGGCAGGAAGCCACTTCGCTCTTTTT
GATCCTGCCCTCCCGCTCGATGTCGTCCACCTCTTCTATGAAGCGGCCCT
CTGCCGCCACGTCCGTCAGGAATGGGCAGCGCAGGCCTCACATCATCAAT
TATCATCAGCACAACCAGGTACCTCCTCGGAACGGTGAAGAGATGAGTAA
TCTCGCGCCTACCCCGCGGGATCTTTTTCCAGCCCCGCCTGCCTTCGAAG
CGCTCGCCCACCGCGTCACCCAGGCAGTCCAGGCCAAAGACCTCCCCGCC
GCCATGACCCATCTCAGGCAACTTGACGCACTATACCTACCTTCCCTTCC
TTCCTCTCCGATCTCCTCTTCCGTGCGCCTTCTTATCTCAGGCACGGCCT
ATGCTGTCCTCCACCTTTGTCTTGCCGAGCGCAAGCGAACGGAGGGAGAA
AAAGGGATCGAAGAAGCCCTCGATGTCTTAACCATGCCGAACCTCGCAAC
CTCATACGACAAGGCCTGCACCCGAATAGCCTTTACCACCCTCCCCATCA
CTGACACCAGCTCATGGCCCACTACCATGGCATTTTTCCGAAAAGTTCTC
ACCTACTTAACGCCGGCGGCATGGCCAGCGCCTCACCAATTCCACCGTGC
CTTGCGGCAGCTCGCCGATGCCGGCCAACCTACGCAATGCCAATGGCTGC
TCGACAGAATGCGGTGTCCTCAAGCTCTTGCTCCCCCTCACGAAGAAGGA
AAGGAAGACAGACGACAACCGTCATTCCTACCCCCTCCTCCCATCCCTAT
TGGGAGTGCTGGACAGTTGCACTCTCCTCGATGGCACCTCCTAAAGAGCT
ATCTGTACTCCCACCAACCCCTCCAAGCCGTCCGTCTGCTGCAGACCGAG
AAGAACCTCCGGCTCGACTGCAATACAACCAATATGGTTTTAAAAGGGTT
GGCGAGGGAAAGATTAGGGCAGGACGCACTGAACTTCCTGAAATGGGCTG
AAGAAGAAGTAGGAGTCAAGACCACTACCGAGAGCTACAACAAGGTGATT
ATCGCCCTTGCGAAAACTAATCGTTCCTTCCATCCATATGCGTCGTCTTC
CTCCTTTCAGCGTTTTCCTCATCCTTGTCCCCCTTCAGCGGACAAGGACG
GACATGCCATAAGCGCTCCTACTGCTGCAGTTGATGCTGAAGCTGATGCC
GCCTCTCCTATAGACACCACAGCCGCGGCGCGCGAAGTCCTTGCACGCAT
GAATGCGAAAGAAATATTACCGGATCACGTGTCTTACTGTGCATTGCTTG
ACGTGTATGCCGAAGCCAATGACGTAAAGGGCGCAGTGGCCATGTTCTTT
GGTGAGATGTGTCAGGTGGGGAGGGAAGGGGGGGGAGAGGGAGGAAAGAG
TGGAATCATGCCGACGGATGTGGCATTTGGGACGTTGATGAAAGCGTTTG
CAAGGGTGGGTGAGTGGAGGAAAGTCTTGATGTGTGTGGAAGGGATGCAT
GAGCTTGGCATCACGGACGAGAGGGAGGTGTGTTATGCCTTAGCGGCGTA
TGCCTGCGGGAAGGCGGGGAGGTGGAGGGAGGTAGTGGGGCTGGTGGATG
GGTTGAAAGAAAGGGAAGGAGGGGTGAGGACTCTCAAGACGTACATCTTT
GCCATGCATACCTGCGGGAAGGCGGGAAGGTACGGGGAGGCAAGGCGGTT
GTTGGAGGAAGTCCAGGGGAGGGGGGACTTGATGGAGGGCATGGATGCCT
ACGCGTATAATCTGGCCATGCATATATGTGCGCGGAATGGGGATCAGGGA
GGGGCACTGCGTTGGTGGGGCATGATGAAGGAGGCAAGGCGAGAGAGAGG
GCTGGATAACTTTAATGTGGGCGCGTTGTTGACGGCGTTTGGGGCCGAAG
GACAGTGGGAGGAAGGGCTGGCGTTTGTTGAAGAGGTGGTGTTGTCTACT
GGACGCCCTGTGCCCGACGCGGCCTTGGCCTTATTGGCTCTGCGGGCGGC
AAAGGCTGGACGGGGAGAGGAGGTGGTGGAGAGAGTATTGGAGCTGTTGT
CGAAGCATCAGCAGTCGATCCCTTCGTTTCTGCATGGAGCCATGTGCTTG
GCGTTGGCGGAGAGCGGACAGTATGCGAAGGGGTTAGGGATGGCACTTGC
CGAAGCCCCGCGCAAGGAACAGCTGCGGTCGGCTGGAATGGGAGAAGAGG
AGTGGCGGGAGAAAGTAAAGGAGAAGGAAGAGGGGGAGGAAGGGGAGGAG
AGCATGGATGACTACGTCAGGACGCAGTTGGCGTTTGTGCAGCTCAAGCA
GACCCCGTGGCCGGTGGCCTGGTGTTTGGTGGACGGTCTGGAGGCGCAGG
GGCTTCTCCATTCAACCGCTGTGGAGGTGGCGACAGAGGCATTGGCGAGG
AAGGACGGCTATGAGCTGTTTGCGTGTGGGTTGGAGAGGCATCGAGGGAG
GGCGTGGCGGGAGGCGGAAGTTGTGGCGGACGAGAGCAGCAGTGACGCCC
ATATCAGCAGCAGCCGCAGCTTGAATGAGGAAGGGGCGAATAGCCAAGAG
GAGGACGAGGATGAAATGAGTAATGACGAAGAGGAAGCCGTGCGATGGGC
CATGGTGCTGAATCCTAGAGCAGCACCCATTCCGTCGCGCTCCTCGCCTT
CATCCCCCTCGTCCTGCTCCATGTCCTATATCGACAGGCACCACTCCCGC
CACGCCGAGCATGGCTGGGCTGCAGCAGCAGCAGCGGCCTTCTCATCCTT
TTCCGGACCTTGGCGGTAA
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protein sequence of NO04G00900.1

>NO04G00900.1-protein ID=NO04G00900.1-protein|Name=NO04G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1240bp
MTKSTSISNIISSRSLATYFKVEEEPKRAQEKGFKKLVSEWPAPHVTVKP
LSSVVIVPAPSTDPSSSVSPTIFPPQFHGNLQPGPTNEPSPLEKHREEHV
TDSTGTSTSQNKAPGTFLLADKNWAAGYVLASPSSPSADPVRESFIARLV
EGVQVAMHSHTGHSRIQLLCTLDGAETFTWREGEAGNQVAHMEHWSSAGS
GIFWGARESYAFGDIIEVRRGITPDLSNPGETGTASLRAACKNRDLSRSF
SLITADGTIYLSCEQVETASLLVKGFMALSHEQRRRRVRAKTAPTASLRV
LASSFPTNLTTSRGTDKKKSFSCFARQEATSLFLILPSRSMSSTSSMKRP
SAATSVRNGQRRPHIINYHQHNQVPPRNGEEMSNLAPTPRDLFPAPPAFE
ALAHRVTQAVQAKDLPAAMTHLRQLDALYLPSLPSSPISSSVRLLISGTA
YAVLHLCLAERKRTEGEKGIEEALDVLTMPNLATSYDKACTRIAFTTLPI
TDTSSWPTTMAFFRKVLTYLTPAAWPAPHQFHRALRQLADAGQPTQCQWL
LDRMRCPQALAPPHEEGKEDRRQPSFLPPPPIPIGSAGQLHSPRWHLLKS
YLYSHQPLQAVRLLQTEKNLRLDCNTTNMVLKGLARERLGQDALNFLKWA
EEEVGVKTTTESYNKVIIALAKTNRSFHPYASSSSFQRFPHPCPPSADKD
GHAISAPTAAVDAEADAASPIDTTAAAREVLARMNAKEILPDHVSYCALL
DVYAEANDVKGAVAMFFGEMCQVGREGGGEGGKSGIMPTDVAFGTLMKAF
ARVGEWRKVLMCVEGMHELGITDEREVCYALAAYACGKAGRWREVVGLVD
GLKEREGGVRTLKTYIFAMHTCGKAGRYGEARRLLEEVQGRGDLMEGMDA
YAYNLAMHICARNGDQGGALRWWGMMKEARRERGLDNFNVGALLTAFGAE
GQWEEGLAFVEEVVLSTGRPVPDAALALLALRAAKAGRGEEVVERVLELL
SKHQQSIPSFLHGAMCLALAESGQYAKGLGMALAEAPRKEQLRSAGMGEE
EWREKVKEKEEGEEGEESMDDYVRTQLAFVQLKQTPWPVAWCLVDGLEAQ
GLLHSTAVEVATEALARKDGYELFACGLERHRGRAWREAEVVADESSSDA
HISSSRSLNEEGANSQEEDEDEMSNDEEEAVRWAMVLNPRAAPIPSRSSP
SSPSSCSMSYIDRHHSRHAEHGWAAAAAAAFSSFSGPWR*
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Synonyms
Publications