NO04G00890, NO04G00890 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G00890 vs. NCBI_GenBank
Match: EWM28470.1 (transmembrane emp24 domain-containing protein 10 [Nannochloropsis gaditana]) HSP 1 Score: 278.5 bits (711), Expect = 2.000e-71 Identity = 145/205 (70.73%), Postives = 173/205 (84.39%), Query Frame = 0 Query: 36 PLSFPFLLVVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRVQENVRATVSNPDGQSVWDSYITAQTQNVPVSADNFGLYRICFSNGGSAVQRVEVGLLDRAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241 P S P LL+ S L L ++AIQLD++P++TRC++D+YAP+EDSTIK+RAVGRVQ+ +R VS PD + WD Y+TA+ ++V + AD FGLY+ICF NGG VQRVEVGLLD+AV L ++AKTKEHL+PLQLLFRRAELTVAGVSKELDSVRQREA LRETS+STN RIQWFSIFSIVILLAVS+WQVTFLKSFFR+KKLL Sbjct: 37 PFSAP-LLLFSCQLALLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQDGIRGMVSTPDNRLFWDGYLTAKIEDVKIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQL-HNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTFLKSFFRAKKLL 239
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_008611397.1 (hypothetical protein SDRG_07346 [Saprolegnia diclina VS20] >EQC35113.1 hypothetical protein SDRG_07346 [Saprolegnia diclina VS20]) HSP 1 Score: 113.2 bits (282), Expect = 1.100e-21 Identity = 74/205 (36.10%), Postives = 118/205 (57.56%), Query Frame = 0 Query: 42 LLVVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRV--QENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLDRAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241 ++ V+LALL+ + A+Q DV+ + +C+SD+ A + +G V + V + +P G+ + DS I ++++ +A+ G Y CF N V RV + V D AK +EHL P++ R+ E TV + +E+ +R+REA +R T++STN+R+ WFS FSI +LLA+ LWQV +LK FF+SKKL+ Sbjct: 35 IVYVALALLM-ASISAVQFDVKRRAEKCLSDEVAAGSLVVVHYNILGNVKGRTGVSLLIKDPMGKYLKEDSDIDLTSEDIHKYSFNAEAAGTYSTCFFNSNDFVTRVSLD-FKHGVEAKDYSDIAK-REHLMPVEKELRKMEDTVDEIHREMLYMREREAAMRNTNESTNSRVLWFSSFSIFVLLAMGLWQVMYLKKFFKSKKLI 236
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_012197729.1 (hypothetical protein SPRG_03770 [Saprolegnia parasitica CBS 223.65] >KDO31850.1 hypothetical protein SPRG_03770 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 112.5 bits (280), Expect = 1.900e-21 Identity = 75/205 (36.59%), Postives = 116/205 (56.59%), Query Frame = 0 Query: 42 LLVVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRV--QENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLDRAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241 ++ V+LAL+L + A+Q DV+ + +C+SD+ A + +G V + V V +P G+ + DS I + ++ +A+ G Y CF N V RV + V D AK +EHL P++ R+ E TV + +E+ +R+REA +R T++STN R+ WFS FSI +LLA+ LWQV +LK FF+SKKL+ Sbjct: 5 IVYVALALVL-ASIGAVQFDVKRRAEKCLSDEVAAGSLVVVHYNILGNVKGRTGVSLLVKDPMGKYLKEDSDIDLTSDDIHKYSFNAETAGTYSTCFFNSNDFVARVSLD-FKHGVEAKDYSDIAK-REHLMPVEKELRKMEDTVDEIHREMLYMREREAAMRNTNESTNARVLWFSSFSIFVLLAMGLWQVMYLKKFFKSKKLI 206
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_008901285.1 (hypothetical protein PPTG_08112 [Phytophthora parasitica INRA-310] >ETI52919.1 hypothetical protein F443_04070 [Phytophthora parasitica P1569] >ETK92779.1 hypothetical protein L915_03952 [Phytophthora parasitica] >ETL46197.1 hypothetical protein L916_03896 [Phytophthora parasitica] >ETL99340.1 hypothetical protein L917_03810 [Phytophthora parasitica] >ETM52484.1 hypothetical protein L914_03914 [Phytophthora parasitica] >ETN13212.1 hypothetical protein PPTG_08112 [Phytophthora parasitica INRA-310] >ETO81622.1 hypothetical protein F444_04125 [Phytophthora parasitica P1976] >ETP22728.1 hypothetical protein F441_04049 [Phytophthora parasitica CJ01A1] >ETP50705.1 hypothetical protein F442_04054 [Phytophthora parasitica P10297] >KUF86124.1 Ankyrin repeat domain-containing protein 50 [Phytophthora nicotianae] >KUF98246.1 Transmembrane protein Tmp21 [Phytophthora nicotianae]) HSP 1 Score: 108.6 bits (270), Expect = 2.700e-20 Identity = 69/206 (33.50%), Postives = 117/206 (56.80%), Query Frame = 0 Query: 42 LLVVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVG--RVQENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLD-RAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241 LLV++L+ + L+A+Q D+ + +C+SD+ A + +G R Q V +++P + + D+ I + ++ +AD G Y +CF N RV +LD + + + +EHL P++ R+ E TV + +E+ +R+REA +R T++STN+R+ WFS FSIV+LL + +WQV +LK FF+SKKL+ Sbjct: 8 LLVLALSAI---SLNAVQFDIRRRAEKCLSDEVAQGSLVVVHYNVIGGVRGQSGVSLAITDPLRKFLKQDANIDTSSDDIHKFSFTADAGGNYAVCFVNSNDKPVRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVDEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIVVLLGMGVWQVMYLKKFFKSKKLI 207
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_024572246.1 (transmembrane emp24 domain-containing protein 10-like [Plasmopara halstedii] >CEG35877.1 transmembrane emp24 domain-containing protein 10-like [Plasmopara halstedii]) HSP 1 Score: 108.6 bits (270), Expect = 2.700e-20 Identity = 65/191 (34.03%), Postives = 107/191 (56.02%), Query Frame = 0 Query: 57 AIQLDVEPYSTRCISDDYAPDEDSTIKLRAVG--RVQENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLD-RAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241 A+Q DV S +C+SD+ A + +G R Q V ++++P + + D+ I + ++ +AD G Y +CF N RV +LD + + + +EHL P++ R+ E TV + +E+ +R+REA +R T++STN+R+ WFS FSI +LL + +WQV +LK FF+SKKL+ Sbjct: 40 AVQFDVRRRSEKCLSDEVAQGSLVVVHYDVIGGVRGQSGVALSITDPLRKFLKQDTNIDTSSDDIHKFSFTADTGGSYAVCFVNNNDKPMRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVEEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIAVLLGMGIWQVMYLKKFFKSKKLI 227
BLAST of NO04G00890 vs. NCBI_GenBank
Match: OQR93755.1 (hypothetical protein ACHHYP_02297 [Achlya hypogyna]) HSP 1 Score: 108.6 bits (270), Expect = 2.700e-20 Identity = 72/205 (35.12%), Postives = 116/205 (56.59%), Query Frame = 0 Query: 42 LLVVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRV--QENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLDRAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241 +L++S+ + L A+Q DV+ + +C+SD+ A + +G V + V V +P G+ + DS I ++++ +A++ G Y CF N RV + V D AK +EHL P++ R+ E TV + +E+ +R+REA +R T++STN+R+ WFS FSI +LLA+ LWQV +LK FF+SKKL+ Sbjct: 6 VLLLSVVVALAA---AVQFDVKRRTEKCLSDEVAQGSLVVVHYNILGNVKGRTGVSLLVKDPFGKYLKEDSDIDLTSEDIHKFSFNAESAGTYSTCFFNSNEFTTRVSLD-FKHGVEAKDYSDIAK-REHLMPVEKELRKMEDTVDEIHREMLYMREREAAMRNTNESTNSRVLWFSSFSIFVLLAMGLWQVMYLKKFFKSKKLI 205
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_002909233.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY58047.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 108.2 bits (269), Expect = 3.500e-20 Identity = 69/206 (33.50%), Postives = 117/206 (56.80%), Query Frame = 0 Query: 42 LLVVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVG--RVQENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLD-RAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241 LLV++L+ + L+A+Q D+ + +C+SD+ A + +G R Q V +++P + + D+ I + ++ +AD G Y +CF N RV +LD + + + +EHL P++ R+ E TV + +E+ +R+REA +R T++STN+R+ WFS FSIV+LL + +WQV +LK FF+SKKL+ Sbjct: 8 LLVLALSAV---SLNAVQFDIRRRAEKCLSDEVAQGSLVVVHYNVIGGVRGQSGVSLAITDPLRKFLKQDANIDTSSDDIHKFSFTADAGGNYAVCFVNSNDKPVRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVDEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIVVLLGMGVWQVMYLKKFFKSKKLI 207
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_009529350.1 (hypothetical protein PHYSODRAFT_333832 [Phytophthora sojae] >EGZ15601.1 hypothetical protein PHYSODRAFT_333832 [Phytophthora sojae]) HSP 1 Score: 107.8 bits (268), Expect = 4.600e-20 Identity = 65/193 (33.68%), Postives = 109/193 (56.48%), Query Frame = 0 Query: 55 LHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVG--RVQENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLD-RAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241 L A+Q D+ + +C+SD+ A + +G R + V +++P + + D+ I + ++ +AD G Y +CF NG RV +LD + + + +EHL P++ R+ E TV + +E+ +R+REA +R T++STN+R+ WFS FSIV+LL + +WQV +LK FF+SKKL+ Sbjct: 6 LGAVQFDIRRRAEKCLSDEVAQGSLVVVHYNVIGGVRGKSGVSLAITDPLRKFLKQDANIDTSSDDIHKFSFTADAGGNYAVCFVNGNDKPVRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVDEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIVVLLGMGVWQVMYLKKFFKSKKLI 195
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_009843945.1 (hypothetical protein H257_17005 [Aphanomyces astaci] >ETV66574.1 hypothetical protein H257_17005 [Aphanomyces astaci]) HSP 1 Score: 106.7 bits (265), Expect = 1.000e-19 Identity = 64/197 (32.49%), Postives = 106/197 (53.81%), Query Frame = 0 Query: 50 LLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRVQ--ENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLDRAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241 +L +H +Q D+ +C+SD+ A D I+ +G Q V + +P G+ + DS + + ++ +A G + CF N RV + + + + +EHL P++ R+ E TV + +E+ +R+REA +R+T++STN R+ WFS FSI +LLA+ LWQV +LK FF+SKKL+ Sbjct: 14 MLVNSVHGVQFDIPTRVEKCLSDEVAKDSFVLIQYDVLGNAQGRTGVSVMIQDPLGKYIKEDSDVDVSSGDLHKFSFNAGTAGSFSTCFFNSNEYTVRVSLDF--KHGVEAKDYSEIAKREHLLPVEKELRKMEDTVDEIHREMLYMREREASMRDTNESTNARVLWFSSFSIFVLLAMGLWQVIYLKKFFKSKKLI 208
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_008863221.1 (hypothetical protein H310_01760 [Aphanomyces invadans] >ETW07128.1 hypothetical protein H310_01760 [Aphanomyces invadans]) HSP 1 Score: 106.7 bits (265), Expect = 1.000e-19 Identity = 67/203 (33.00%), Postives = 110/203 (54.19%), Query Frame = 0 Query: 44 VVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRVQ--ENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLDRAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241 V+ + +L G + +Q D+ +C+SD+ A D I+ +G Q V + +P G+ + DS + + ++ +A G + CF N S V V L + + + +EHL P++ R+ E TV + +E+ +R+REA +R+T++STN R+ WFS FSI +LLA+ LWQV +LK FF+SKKL+ Sbjct: 6 VLLVLCMLIGSVQGVQFDIPTRVEKCLSDEVAQDSFVLIQYDVLGNAQGRTGVSVMIQDPLGKYIKEDSDVDVSSGDLHKFSFNAGTAGSFSTCFFN--SNEYNVRVSLDFKHGVEAKDYSEIAKREHLMPVEKELRKLEDTVDEIHREMLYMREREAAMRDTNESTNARVLWFSSFSIFVLLAMGLWQVIYLKKFFKSKKLI 206 The following BLAST results are available for this feature:
BLAST of NO04G00890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G00890 ID=NO04G00890|Name=NO04G00890|organism=Nannochloropsis oceanica|type=gene|length=723bpback to top protein sequence of NO04G00890.1 >NO04G00890.1-protein ID=NO04G00890.1-protein|Name=NO04G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bpback to top Synonyms
Publications
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