NO04G00890, NO04G00890 (gene) Nannochloropsis oceanica

Overview
NameNO04G00890
Unique NameNO04G00890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length723
Alignment locationchr4:292058..292780 +

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Properties
Property NameValue
DescriptionTransmembrane emp24 domain-containing protein 10
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:292058..292780 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015720TMP21-related
IPR009038GOLD
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005783endoplasmic reticulum
GO:0005737cytoplasm
Homology
BLAST of NO04G00890 vs. NCBI_GenBank
Match: EWM28470.1 (transmembrane emp24 domain-containing protein 10 [Nannochloropsis gaditana])

HSP 1 Score: 278.5 bits (711), Expect = 2.000e-71
Identity = 145/205 (70.73%), Postives = 173/205 (84.39%), Query Frame = 0
Query:   36 PLSFPFLLVVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRVQENVRATVSNPDGQSVWDSYITAQTQNVPVSADNFGLYRICFSNGGSAVQRVEVGLLDRAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241
            P S P LL+ S  L L   ++AIQLD++P++TRC++D+YAP+EDSTIK+RAVGRVQ+ +R  VS PD +  WD Y+TA+ ++V + AD FGLY+ICF NGG  VQRVEVGLLD+AV L    ++AKTKEHL+PLQLLFRRAELTVAGVSKELDSVRQREA LRETS+STN RIQWFSIFSIVILLAVS+WQVTFLKSFFR+KKLL
Sbjct:   37 PFSAP-LLLFSCQLALLSLVNAIQLDLQPHTTRCVADEYAPEEDSTIKVRAVGRVQDGIRGMVSTPDNRLFWDGYLTAKIEDVKIPADYFGLYKICFWNGGREVQRVEVGLLDKAVQL-HNAETAKTKEHLQPLQLLFRRAELTVAGVSKELDSVRQREASLRETSESTNRRIQWFSIFSIVILLAVSIWQVTFLKSFFRAKKLL 239          
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_008611397.1 (hypothetical protein SDRG_07346 [Saprolegnia diclina VS20] >EQC35113.1 hypothetical protein SDRG_07346 [Saprolegnia diclina VS20])

HSP 1 Score: 113.2 bits (282), Expect = 1.100e-21
Identity = 74/205 (36.10%), Postives = 118/205 (57.56%), Query Frame = 0
Query:   42 LLVVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRV--QENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLDRAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241
            ++ V+LALL+   + A+Q DV+  + +C+SD+ A      +    +G V  +  V   + +P G+ +  DS I   ++++     +A+  G Y  CF N    V RV +      V      D AK +EHL P++   R+ E TV  + +E+  +R+REA +R T++STN+R+ WFS FSI +LLA+ LWQV +LK FF+SKKL+
Sbjct:   35 IVYVALALLM-ASISAVQFDVKRRAEKCLSDEVAAGSLVVVHYNILGNVKGRTGVSLLIKDPMGKYLKEDSDIDLTSEDIHKYSFNAEAAGTYSTCFFNSNDFVTRVSLD-FKHGVEAKDYSDIAK-REHLMPVEKELRKMEDTVDEIHREMLYMREREAAMRNTNESTNSRVLWFSSFSIFVLLAMGLWQVMYLKKFFKSKKLI 236          
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_012197729.1 (hypothetical protein SPRG_03770 [Saprolegnia parasitica CBS 223.65] >KDO31850.1 hypothetical protein SPRG_03770 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 112.5 bits (280), Expect = 1.900e-21
Identity = 75/205 (36.59%), Postives = 116/205 (56.59%), Query Frame = 0
Query:   42 LLVVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRV--QENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLDRAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241
            ++ V+LAL+L   + A+Q DV+  + +C+SD+ A      +    +G V  +  V   V +P G+ +  DS I   + ++     +A+  G Y  CF N    V RV +      V      D AK +EHL P++   R+ E TV  + +E+  +R+REA +R T++STN R+ WFS FSI +LLA+ LWQV +LK FF+SKKL+
Sbjct:    5 IVYVALALVL-ASIGAVQFDVKRRAEKCLSDEVAAGSLVVVHYNILGNVKGRTGVSLLVKDPMGKYLKEDSDIDLTSDDIHKYSFNAETAGTYSTCFFNSNDFVARVSLD-FKHGVEAKDYSDIAK-REHLMPVEKELRKMEDTVDEIHREMLYMREREAAMRNTNESTNARVLWFSSFSIFVLLAMGLWQVMYLKKFFKSKKLI 206          
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_008901285.1 (hypothetical protein PPTG_08112 [Phytophthora parasitica INRA-310] >ETI52919.1 hypothetical protein F443_04070 [Phytophthora parasitica P1569] >ETK92779.1 hypothetical protein L915_03952 [Phytophthora parasitica] >ETL46197.1 hypothetical protein L916_03896 [Phytophthora parasitica] >ETL99340.1 hypothetical protein L917_03810 [Phytophthora parasitica] >ETM52484.1 hypothetical protein L914_03914 [Phytophthora parasitica] >ETN13212.1 hypothetical protein PPTG_08112 [Phytophthora parasitica INRA-310] >ETO81622.1 hypothetical protein F444_04125 [Phytophthora parasitica P1976] >ETP22728.1 hypothetical protein F441_04049 [Phytophthora parasitica CJ01A1] >ETP50705.1 hypothetical protein F442_04054 [Phytophthora parasitica P10297] >KUF86124.1 Ankyrin repeat domain-containing protein 50 [Phytophthora nicotianae] >KUF98246.1 Transmembrane protein Tmp21 [Phytophthora nicotianae])

HSP 1 Score: 108.6 bits (270), Expect = 2.700e-20
Identity = 69/206 (33.50%), Postives = 117/206 (56.80%), Query Frame = 0
Query:   42 LLVVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVG--RVQENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLD-RAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241
            LLV++L+ +    L+A+Q D+   + +C+SD+ A      +    +G  R Q  V   +++P  + +  D+ I   + ++     +AD  G Y +CF N      RV   +LD +     + +     +EHL P++   R+ E TV  + +E+  +R+REA +R T++STN+R+ WFS FSIV+LL + +WQV +LK FF+SKKL+
Sbjct:    8 LLVLALSAI---SLNAVQFDIRRRAEKCLSDEVAQGSLVVVHYNVIGGVRGQSGVSLAITDPLRKFLKQDANIDTSSDDIHKFSFTADAGGNYAVCFVNSNDKPVRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVDEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIVVLLGMGVWQVMYLKKFFKSKKLI 207          
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_024572246.1 (transmembrane emp24 domain-containing protein 10-like [Plasmopara halstedii] >CEG35877.1 transmembrane emp24 domain-containing protein 10-like [Plasmopara halstedii])

HSP 1 Score: 108.6 bits (270), Expect = 2.700e-20
Identity = 65/191 (34.03%), Postives = 107/191 (56.02%), Query Frame = 0
Query:   57 AIQLDVEPYSTRCISDDYAPDEDSTIKLRAVG--RVQENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLD-RAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241
            A+Q DV   S +C+SD+ A      +    +G  R Q  V  ++++P  + +  D+ I   + ++     +AD  G Y +CF N      RV   +LD +     + +     +EHL P++   R+ E TV  + +E+  +R+REA +R T++STN+R+ WFS FSI +LL + +WQV +LK FF+SKKL+
Sbjct:   40 AVQFDVRRRSEKCLSDEVAQGSLVVVHYDVIGGVRGQSGVALSITDPLRKFLKQDTNIDTSSDDIHKFSFTADTGGSYAVCFVNNNDKPMRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVEEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIAVLLGMGIWQVMYLKKFFKSKKLI 227          
BLAST of NO04G00890 vs. NCBI_GenBank
Match: OQR93755.1 (hypothetical protein ACHHYP_02297 [Achlya hypogyna])

HSP 1 Score: 108.6 bits (270), Expect = 2.700e-20
Identity = 72/205 (35.12%), Postives = 116/205 (56.59%), Query Frame = 0
Query:   42 LLVVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRV--QENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLDRAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241
            +L++S+ + L     A+Q DV+  + +C+SD+ A      +    +G V  +  V   V +P G+ +  DS I   ++++     +A++ G Y  CF N      RV +      V      D AK +EHL P++   R+ E TV  + +E+  +R+REA +R T++STN+R+ WFS FSI +LLA+ LWQV +LK FF+SKKL+
Sbjct:    6 VLLLSVVVALAA---AVQFDVKRRTEKCLSDEVAQGSLVVVHYNILGNVKGRTGVSLLVKDPFGKYLKEDSDIDLTSEDIHKFSFNAESAGTYSTCFFNSNEFTTRVSLD-FKHGVEAKDYSDIAK-REHLMPVEKELRKMEDTVDEIHREMLYMREREAAMRNTNESTNSRVLWFSSFSIFVLLAMGLWQVMYLKKFFKSKKLI 205          
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_002909233.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY58047.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 108.2 bits (269), Expect = 3.500e-20
Identity = 69/206 (33.50%), Postives = 117/206 (56.80%), Query Frame = 0
Query:   42 LLVVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVG--RVQENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLD-RAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241
            LLV++L+ +    L+A+Q D+   + +C+SD+ A      +    +G  R Q  V   +++P  + +  D+ I   + ++     +AD  G Y +CF N      RV   +LD +     + +     +EHL P++   R+ E TV  + +E+  +R+REA +R T++STN+R+ WFS FSIV+LL + +WQV +LK FF+SKKL+
Sbjct:    8 LLVLALSAV---SLNAVQFDIRRRAEKCLSDEVAQGSLVVVHYNVIGGVRGQSGVSLAITDPLRKFLKQDANIDTSSDDIHKFSFTADAGGNYAVCFVNSNDKPVRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVDEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIVVLLGMGVWQVMYLKKFFKSKKLI 207          
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_009529350.1 (hypothetical protein PHYSODRAFT_333832 [Phytophthora sojae] >EGZ15601.1 hypothetical protein PHYSODRAFT_333832 [Phytophthora sojae])

HSP 1 Score: 107.8 bits (268), Expect = 4.600e-20
Identity = 65/193 (33.68%), Postives = 109/193 (56.48%), Query Frame = 0
Query:   55 LHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVG--RVQENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLD-RAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241
            L A+Q D+   + +C+SD+ A      +    +G  R +  V   +++P  + +  D+ I   + ++     +AD  G Y +CF NG     RV   +LD +     + +     +EHL P++   R+ E TV  + +E+  +R+REA +R T++STN+R+ WFS FSIV+LL + +WQV +LK FF+SKKL+
Sbjct:    6 LGAVQFDIRRRAEKCLSDEVAQGSLVVVHYNVIGGVRGKSGVSLAITDPLRKFLKQDANIDTSSDDIHKFSFTADAGGNYAVCFVNGNDKPVRV---MLDFKHGVEAKDYTEVAKREHLMPVEKELRKMEDTVDEIHREMLYMREREATMRNTNESTNSRVLWFSFFSIVVLLGMGVWQVMYLKKFFKSKKLI 195          
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_009843945.1 (hypothetical protein H257_17005 [Aphanomyces astaci] >ETV66574.1 hypothetical protein H257_17005 [Aphanomyces astaci])

HSP 1 Score: 106.7 bits (265), Expect = 1.000e-19
Identity = 64/197 (32.49%), Postives = 106/197 (53.81%), Query Frame = 0
Query:   50 LLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRVQ--ENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLDRAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241
            +L   +H +Q D+     +C+SD+ A D    I+   +G  Q    V   + +P G+ +  DS +   + ++     +A   G +  CF N      RV +    +     + +     +EHL P++   R+ E TV  + +E+  +R+REA +R+T++STN R+ WFS FSI +LLA+ LWQV +LK FF+SKKL+
Sbjct:   14 MLVNSVHGVQFDIPTRVEKCLSDEVAKDSFVLIQYDVLGNAQGRTGVSVMIQDPLGKYIKEDSDVDVSSGDLHKFSFNAGTAGSFSTCFFNSNEYTVRVSLDF--KHGVEAKDYSEIAKREHLLPVEKELRKMEDTVDEIHREMLYMREREASMRDTNESTNARVLWFSSFSIFVLLAMGLWQVIYLKKFFKSKKLI 208          
BLAST of NO04G00890 vs. NCBI_GenBank
Match: XP_008863221.1 (hypothetical protein H310_01760 [Aphanomyces invadans] >ETW07128.1 hypothetical protein H310_01760 [Aphanomyces invadans])

HSP 1 Score: 106.7 bits (265), Expect = 1.000e-19
Identity = 67/203 (33.00%), Postives = 110/203 (54.19%), Query Frame = 0
Query:   44 VVSLALLLPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRVQ--ENVRATVSNPDGQSV-WDSYITAQTQNV---PVSADNFGLYRICFSNGGSAVQRVEVGLLDRAVTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRETSDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL 241
            V+ +  +L G +  +Q D+     +C+SD+ A D    I+   +G  Q    V   + +P G+ +  DS +   + ++     +A   G +  CF N  S    V V L  +     + +     +EHL P++   R+ E TV  + +E+  +R+REA +R+T++STN R+ WFS FSI +LLA+ LWQV +LK FF+SKKL+
Sbjct:    6 VLLVLCMLIGSVQGVQFDIPTRVEKCLSDEVAQDSFVLIQYDVLGNAQGRTGVSVMIQDPLGKYIKEDSDVDVSSGDLHKFSFNAGTAGSFSTCFFN--SNEYNVRVSLDFKHGVEAKDYSEIAKREHLMPVEKELRKLEDTVDEIHREMLYMREREAAMRDTNESTNARVLWFSSFSIFVLLAMGLWQVIYLKKFFKSKKLI 206          
The following BLAST results are available for this feature:
BLAST of NO04G00890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28470.12.000e-7170.73transmembrane emp24 domain-containing protein 10 [... [more]
XP_008611397.11.100e-2136.10hypothetical protein SDRG_07346 [Saprolegnia dicli... [more]
XP_012197729.11.900e-2136.59hypothetical protein SPRG_03770 [Saprolegnia paras... [more]
XP_008901285.12.700e-2033.50hypothetical protein PPTG_08112 [Phytophthora para... [more]
XP_024572246.12.700e-2034.03transmembrane emp24 domain-containing protein 10-l... [more]
OQR93755.12.700e-2035.12hypothetical protein ACHHYP_02297 [Achlya hypogyna... [more]
XP_002909233.13.500e-2033.50conserved hypothetical protein [Phytophthora infes... [more]
XP_009529350.14.600e-2033.68hypothetical protein PHYSODRAFT_333832 [Phytophtho... [more]
XP_009843945.11.000e-1932.49hypothetical protein H257_17005 [Aphanomyces astac... [more]
XP_008863221.11.000e-1933.00hypothetical protein H310_01760 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005015NSK005015Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00890.1NO04G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578241gene_1867Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100190g6gene2116Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00890.1NO04G00890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00890 ID=NO04G00890|Name=NO04G00890|organism=Nannochloropsis oceanica|type=gene|length=723bp
ATGGCGCCATCTAACCAACAAGAACCCACGTCCGTGCCGCCACATGGTGC
CTGCTCCTCAACCACGCCTCCCACCACCATCATCACCCCAGAAAGAAGAC
GCGCCCCACTTTCATTTCCCTTCCTCCTCGTCGTCTCTCTGGCCCTCCTG
CTCCCTGGGCCTCTTCACGCTATTCAGTTGGATGTGGAGCCCTACAGCAC
TCGCTGCATCTCTGACGACTACGCACCCGACGAGGACTCAACCATCAAGT
TGCGGGCAGTTGGTCGCGTCCAAGAAAACGTCCGGGCCACGGTCTCCAAT
CCTGACGGCCAGTCCGTGTGGGATAGCTACATCACCGCTCAAACGCAAAA
TGTGCCCGTGTCCGCAGATAATTTCGGTTTGTATCGCATTTGCTTCTCGA
ACGGCGGGTCAGCGGTGCAGCGGGTGGAGGTGGGGTTGTTGGACCGAGCG
GTGACGTTGGGCCAGAAATTCGATTCCGCCAAGACCAAAGAGCACCTGCG
GCCTTTGCAGCTCTTATTTCGCCGCGCGGAGTTGACTGTGGCGGGGGTTA
GCAAGGAATTGGACAGCGTCCGGCAAAGAGAGGCGGTGTTGCGGGAAACC
AGCGATTCGACGAATACCCGCATTCAGTGGTTTTCCATTTTTTCGATAGT
TATTCTATTGGCCGTGAGCTTATGGCAGGTGACTTTCCTCAAGTCCTTCT
TTCGCTCTAAGAAGCTTTTGTAG
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protein sequence of NO04G00890.1

>NO04G00890.1-protein ID=NO04G00890.1-protein|Name=NO04G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MAPSNQQEPTSVPPHGACSSTTPPTTIITPERRRAPLSFPFLLVVSLALL
LPGPLHAIQLDVEPYSTRCISDDYAPDEDSTIKLRAVGRVQENVRATVSN
PDGQSVWDSYITAQTQNVPVSADNFGLYRICFSNGGSAVQRVEVGLLDRA
VTLGQKFDSAKTKEHLRPLQLLFRRAELTVAGVSKELDSVRQREAVLRET
SDSTNTRIQWFSIFSIVILLAVSLWQVTFLKSFFRSKKLL*
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Synonyms
Publications