NO04G00880, NO04G00880 (gene) Nannochloropsis oceanica

Overview
NameNO04G00880
Unique NameNO04G00880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1422
Alignment locationchr4:289899..291320 -

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Properties
Property NameValue
DescriptionLeucine-rich repeat, cysteine-containing subtype
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:289899..291320 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR006553Leu-rich_rpt_Cys-con_subtyp
Homology
BLAST of NO04G00880 vs. NCBI_GenBank
Match: EWM28466.1 (Leucine-rich repeat, cysteine-containing subtype [Nannochloropsis gaditana])

HSP 1 Score: 317.8 bits (813), Expect = 5.800e-83
Identity = 208/480 (43.33%), Postives = 273/480 (56.88%), Query Frame = 0
Query:    1 MPIGGGARKSFCTATTA--IAGKRRRSH-GPTTVAVALQPRKVVKRRLSATTQKEPPPRARHQRGTGIARSTMTSKATNSNKGKRTEHNCSSGIG----SCCSSHSQRFGSRFPATSTTSTSEPVTFSMLPGDIQARVLFSGYFDSLFVLNRLSLVSKHMYHMASSCYKEMDLSRLPKLGIDALSHIESRFKGIRKLDMSFCDAVNDEAVINLFPLEGTLTSLILRGCHVSDMGLEAIGKFAQLECLDISKQYEEQSLIVTDYGLAALSKLRRLREISLAWNKCVTDDGVASLIGASQGVKQLRVLDLSCCMGLTDAVCESLVGQPLERLSFLGCPMITDQSLGMLFASESLGAPYSYYPYHYPDLSPSRSSQSLPALPLTPSAVSAAGNTPFAATPIAAALTRSSXXXXXXXXXXXXXXXXXITSLSLAHCEALTDVGVEILMTLPNLVDLDMRDCRRLSEEGRSRLQKWLPVASVGLS 474
            MP G  A+KSF TA  A  +AGKRR SH GPTTVA+A+QP+K  +RRLS+           HQ           + AT +   K + H   S +      C  S  +R GSR    +T  ++ P TF MLP DIQARVL+SGYF+S++VL  LSLVSK  + MAS CY E+DLSRLP L  + LS + SRF+G+  LD+SFCD+V D   + L     TL  + LRGC VSD GL+ I +F +LE +D+SK+  +QS ++TD GL  L+ LR L+E++LAWN+ +TD+GV  L+  + G K LRVLDLSCC  LTDA CE+LVGQPLE             +L +L+   S G   S++         S     + A P   +         +++T +     R+                  + SLSLAHC ALTD+ VEIL+T   L  LDMRDCR L+E+ RS LQKWLP A V  S
Sbjct:    1 MPPGAWAQKSFETAEMAEDVAGKRRESHAGPTTVAIAVQPKK--RRRLSSRV-------VYHQE----------TSATTNGYTKSSIHTGGSCMNVEDKRCSQSSGRRLGSRL---ATGQSTAPATFCMLPTDIQARVLYSGYFNSVYVLTNLSLVSKGWHAMASKCYHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCGVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEXXXXXXXXXXXXXALRILYVDGS-GNGDSFF---------STGLLEMQAFPRDVNERVHCAAVSYSSTALPQTGDRA--------RVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSMLQKWLPAAMVACS 440          
BLAST of NO04G00880 vs. NCBI_GenBank
Match: GAX77085.1 (hypothetical protein CEUSTIGMA_g4531.t1 [Chlamydomonas eustigma])

HSP 1 Score: 80.1 bits (196), Expect = 2.000e-11
Identity = 61/157 (38.85%), Postives = 88/157 (56.05%), Query Frame = 0
Query:  184 FKGIRKLDMSFCDAVNDEAVINLFPLEGTLTSLILRGCH-VSDMGLEAIGKFAQ-LECLDISKQYEEQSLIVTDYGLAALSKLRRLREISLAWNKCVTDDGVASLIGASQGVKQLRVLDLSCCMGLTDAVCESLVGQ--PLERLSFLGCPMITDQSL 337
            + G   L +S    V+D  + NL  ++ +L +L+L GC+ +S++GL  I + A  LE LDIS       + V+D GLA LS L+RLRE   A+N  VTD+GV +LI  + G K L+ LDLS C  L++ V   L  +   L  L+   CP I  + L
Sbjct:  225 YTGFTSLSLSDLSCVDDACIYNLASIQ-SLKTLVLSGCNSISNIGLGFIARNAPLLETLDIS----GCDVHVSDVGLAKLSTLQRLREFCTAFNSRVTDNGVKALISGAAG-KGLKKLDLSGCHQLSNQVLPWLGSEVHGLLELNVRWCPRIDQRGL 375          
BLAST of NO04G00880 vs. NCBI_GenBank
Match: XP_020909660.1 (putative RNA-binding protein EEED8.10 [Exaiptasia pallida] >KXJ29412.1 putative RNA-binding protein EEED8.10 [Exaiptasia pallida])

HSP 1 Score: 69.7 bits (169), Expect = 2.700e-8
Identity = 50/164 (30.49%), Postives = 76/164 (46.34%), Query Frame = 0
Query:  175 DALSHIESRFKGIRKLDMSFCDAVNDEAVINLFPLEGTLTSLILRGCHVSDMGLEAIGKFAQLECLDISKQYEEQSLIVTDYGLAALSKLRRLREISLAWNKCVTDDGVASLIGASQGVKQLRVLDLSCCMGLTDAVCESLVGQ--PLERLSFLGCPMITDQSL 337
            + L  + SRF  + KLD+S CDAVND  + ++      L SL ++ C + D                           V+D GL +L    +L+E+ +++N  +T+  ++ L  A  G   LR+     C G+TD V ESL+ +   L  L   GC  ITD SL
Sbjct:  485 EGLEMMISRFANLMKLDLSGCDAVNDNLLFHIGRCSTNLNSLNIQDCSIGD---------------------------VSDAGLQSLVTCEKLQELIISYNDHITNASISQL--ALNGT--LRIFIARSCDGMTDGVVESLLTRCTNLAELDLSGCIYITDASL 617          
The following BLAST results are available for this feature:
BLAST of NO04G00880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28466.15.800e-8343.33Leucine-rich repeat, cysteine-containing subtype [... [more]
GAX77085.12.000e-1138.85hypothetical protein CEUSTIGMA_g4531.t1 [Chlamydom... [more]
XP_020909660.12.700e-830.49putative RNA-binding protein EEED8.10 [Exaiptasia ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005016NSK005016Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00880.1NO04G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563546gene_1866Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100190g7gene2115Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00880.1NO04G00880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00880 ID=NO04G00880|Name=NO04G00880|organism=Nannochloropsis oceanica|type=gene|length=1422bp
ATGCCAATTGGAGGAGGCGCCCGTAAATCCTTTTGTACCGCCACTACAGC
CATAGCGGGCAAGCGGCGCCGGTCGCATGGACCTACCACGGTCGCTGTGG
CTCTTCAACCCCGCAAGGTCGTAAAGCGCCGCTTGTCAGCCACGACTCAA
AAGGAACCACCACCCCGCGCCCGGCACCAGCGAGGCACCGGTATCGCCAG
GAGCACCATGACGAGTAAGGCTACGAACAGCAACAAAGGGAAGCGTACGG
AACACAACTGCAGTAGTGGCATAGGCAGCTGCTGCAGCAGCCATAGCCAG
CGCTTCGGCTCGCGGTTTCCCGCGACCAGCACGACTAGCACCAGCGAGCC
CGTGACCTTCAGCATGCTACCTGGAGACATTCAGGCGCGCGTCCTTTTCT
CTGGTTACTTCGACTCGCTTTTCGTGTTGAACCGCCTGTCCCTAGTGAGC
AAGCACATGTACCACATGGCTTCGTCTTGCTACAAAGAAATGGACCTCTC
TCGCCTCCCTAAGCTCGGCATTGATGCCCTCAGCCACATAGAGTCTCGTT
TCAAGGGTATCCGCAAGCTGGACATGTCATTTTGTGACGCTGTGAATGAC
GAGGCGGTTATAAATCTTTTTCCTTTGGAAGGGACACTCACCAGCCTTAT
TCTCCGGGGGTGTCATGTCTCAGACATGGGCCTGGAAGCTATTGGAAAAT
TTGCGCAGTTGGAATGCCTGGATATTTCCAAGCAGTATGAAGAACAGAGC
TTAATTGTGACGGATTATGGATTGGCGGCTTTGAGCAAGCTCCGACGGTT
GCGGGAGATCTCTCTGGCGTGGAATAAGTGTGTCACGGATGACGGGGTAG
CCTCTTTGATTGGTGCGTCGCAAGGGGTCAAGCAGCTCCGCGTGTTAGAC
TTGTCGTGCTGCATGGGTTTGACAGATGCGGTGTGTGAGTCATTGGTAGG
ACAGCCGTTGGAGCGCTTGTCTTTTCTAGGTTGCCCCATGATCACGGACC
AGAGCCTGGGCATGCTCTTTGCCAGCGAGTCCCTCGGCGCGCCCTACTCG
TACTACCCCTACCATTATCCCGACCTTTCCCCCTCTCGCTCGTCACAATC
TCTTCCCGCCCTCCCTCTTACTCCTTCAGCTGTGTCTGCTGCAGGAAATA
CTCCGTTTGCTGCTACCCCGATCGCTGCAGCTCTGACCCGCTCTTCCTCC
TCGCCCTTGCCCTCATCCTCTGCGGCGTCCTCATTCCCTACCAGCAGCAT
CACATCCCTGTCGCTGGCACACTGTGAAGCACTAACGGACGTCGGAGTGG
AAATCCTGATGACGTTACCCAATCTGGTTGATTTGGACATGAGGGATTGT
CGACGGCTGTCGGAGGAGGGAAGAAGCAGGCTGCAGAAGTGGCTACCAGT
GGCGTCGGTGGGTTTGTCGTAA
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protein sequence of NO04G00880.1

>NO04G00880.1-protein ID=NO04G00880.1-protein|Name=NO04G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MPIGGGARKSFCTATTAIAGKRRRSHGPTTVAVALQPRKVVKRRLSATTQ
KEPPPRARHQRGTGIARSTMTSKATNSNKGKRTEHNCSSGIGSCCSSHSQ
RFGSRFPATSTTSTSEPVTFSMLPGDIQARVLFSGYFDSLFVLNRLSLVS
KHMYHMASSCYKEMDLSRLPKLGIDALSHIESRFKGIRKLDMSFCDAVND
EAVINLFPLEGTLTSLILRGCHVSDMGLEAIGKFAQLECLDISKQYEEQS
LIVTDYGLAALSKLRRLREISLAWNKCVTDDGVASLIGASQGVKQLRVLD
LSCCMGLTDAVCESLVGQPLERLSFLGCPMITDQSLGMLFASESLGAPYS
YYPYHYPDLSPSRSSQSLPALPLTPSAVSAAGNTPFAATPIAAALTRSSS
SPLPSSSAASSFPTSSITSLSLAHCEALTDVGVEILMTLPNLVDLDMRDC
RRLSEEGRSRLQKWLPVASVGLS*
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Synonyms
Publications