NO04G00880, NO04G00880 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G00880 vs. NCBI_GenBank
Match: EWM28466.1 (Leucine-rich repeat, cysteine-containing subtype [Nannochloropsis gaditana]) HSP 1 Score: 317.8 bits (813), Expect = 5.800e-83 Identity = 208/480 (43.33%), Postives = 273/480 (56.88%), Query Frame = 0 Query: 1 MPIGGGARKSFCTATTA--IAGKRRRSH-GPTTVAVALQPRKVVKRRLSATTQKEPPPRARHQRGTGIARSTMTSKATNSNKGKRTEHNCSSGIG----SCCSSHSQRFGSRFPATSTTSTSEPVTFSMLPGDIQARVLFSGYFDSLFVLNRLSLVSKHMYHMASSCYKEMDLSRLPKLGIDALSHIESRFKGIRKLDMSFCDAVNDEAVINLFPLEGTLTSLILRGCHVSDMGLEAIGKFAQLECLDISKQYEEQSLIVTDYGLAALSKLRRLREISLAWNKCVTDDGVASLIGASQGVKQLRVLDLSCCMGLTDAVCESLVGQPLERLSFLGCPMITDQSLGMLFASESLGAPYSYYPYHYPDLSPSRSSQSLPALPLTPSAVSAAGNTPFAATPIAAALTRSSXXXXXXXXXXXXXXXXXITSLSLAHCEALTDVGVEILMTLPNLVDLDMRDCRRLSEEGRSRLQKWLPVASVGLS 474 MP G A+KSF TA A +AGKRR SH GPTTVA+A+QP+K +RRLS+ HQ + AT + K + H S + C S +R GSR +T ++ P TF MLP DIQARVL+SGYF+S++VL LSLVSK + MAS CY E+DLSRLP L + LS + SRF+G+ LD+SFCD+V D + L TL + LRGC VSD GL+ I +F +LE +D+SK+ +QS ++TD GL L+ LR L+E++LAWN+ +TD+GV L+ + G K LRVLDLSCC LTDA CE+LVGQPLE +L +L+ S G S++ S + A P + +++T + R+ + SLSLAHC ALTD+ VEIL+T L LDMRDCR L+E+ RS LQKWLP A V S Sbjct: 1 MPPGAWAQKSFETAEMAEDVAGKRRESHAGPTTVAIAVQPKK--RRRLSSRV-------VYHQE----------TSATTNGYTKSSIHTGGSCMNVEDKRCSQSSGRRLGSRL---ATGQSTAPATFCMLPTDIQARVLYSGYFNSVYVLTNLSLVSKGWHAMASKCYHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMALTRCNTTLIRISLRGCGVSDQGLQEIFRFTRLESVDVSKRKRDQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPAPGSKHLRVLDLSCCERLTDAACEALVGQPLEXXXXXXXXXXXXXALRILYVDGS-GNGDSFF---------STGLLEMQAFPRDVNERVHCAAVSYSSTALPQTGDRA--------RVGSPQPATSLVSLSLAHCPALTDLSVEILLTFSRLQSLDMRDCRGLTEKARSMLQKWLPAAMVACS 440
BLAST of NO04G00880 vs. NCBI_GenBank
Match: GAX77085.1 (hypothetical protein CEUSTIGMA_g4531.t1 [Chlamydomonas eustigma]) HSP 1 Score: 80.1 bits (196), Expect = 2.000e-11 Identity = 61/157 (38.85%), Postives = 88/157 (56.05%), Query Frame = 0 Query: 184 FKGIRKLDMSFCDAVNDEAVINLFPLEGTLTSLILRGCH-VSDMGLEAIGKFAQ-LECLDISKQYEEQSLIVTDYGLAALSKLRRLREISLAWNKCVTDDGVASLIGASQGVKQLRVLDLSCCMGLTDAVCESLVGQ--PLERLSFLGCPMITDQSL 337 + G L +S V+D + NL ++ +L +L+L GC+ +S++GL I + A LE LDIS + V+D GLA LS L+RLRE A+N VTD+GV +LI + G K L+ LDLS C L++ V L + L L+ CP I + L Sbjct: 225 YTGFTSLSLSDLSCVDDACIYNLASIQ-SLKTLVLSGCNSISNIGLGFIARNAPLLETLDIS----GCDVHVSDVGLAKLSTLQRLREFCTAFNSRVTDNGVKALISGAAG-KGLKKLDLSGCHQLSNQVLPWLGSEVHGLLELNVRWCPRIDQRGL 375
BLAST of NO04G00880 vs. NCBI_GenBank
Match: XP_020909660.1 (putative RNA-binding protein EEED8.10 [Exaiptasia pallida] >KXJ29412.1 putative RNA-binding protein EEED8.10 [Exaiptasia pallida]) HSP 1 Score: 69.7 bits (169), Expect = 2.700e-8 Identity = 50/164 (30.49%), Postives = 76/164 (46.34%), Query Frame = 0 Query: 175 DALSHIESRFKGIRKLDMSFCDAVNDEAVINLFPLEGTLTSLILRGCHVSDMGLEAIGKFAQLECLDISKQYEEQSLIVTDYGLAALSKLRRLREISLAWNKCVTDDGVASLIGASQGVKQLRVLDLSCCMGLTDAVCESLVGQ--PLERLSFLGCPMITDQSL 337 + L + SRF + KLD+S CDAVND + ++ L SL ++ C + D V+D GL +L +L+E+ +++N +T+ ++ L A G LR+ C G+TD V ESL+ + L L GC ITD SL Sbjct: 485 EGLEMMISRFANLMKLDLSGCDAVNDNLLFHIGRCSTNLNSLNIQDCSIGD---------------------------VSDAGLQSLVTCEKLQELIISYNDHITNASISQL--ALNGT--LRIFIARSCDGMTDGVVESLLTRCTNLAELDLSGCIYITDASL 617 The following BLAST results are available for this feature:
BLAST of NO04G00880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G00880 ID=NO04G00880|Name=NO04G00880|organism=Nannochloropsis oceanica|type=gene|length=1422bpback to top protein sequence of NO04G00880.1 >NO04G00880.1-protein ID=NO04G00880.1-protein|Name=NO04G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=474bpback to top Synonyms
Publications
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