NO04G00810, NO04G00810 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G00810 vs. NCBI_GenBank
Match: XP_006138730.1 (PREDICTED: DNA repair protein RAD51 homolog 3 [Pelodiscus sinensis]) HSP 1 Score: 178.7 bits (452), Expect = 3.700e-41 Identity = 107/275 (38.91%), Postives = 150/275 (54.55%), Query Frame = 0 Query: 112 IITFCRAIDTMLGGGVQRGQLMEIVGIPGSGKTQVGIQLAIDAQIPRSFRGAGGKAVFIDTEGAFMAERAAEMGQALIDHLQRILASNQCKXXXXXXXXXXXXDVAGLTLKTVLGNVWVLRCLNDAELMQTLQHLPAFLDSEPEVVLVVIDSIALPFRQDKMFQTESAVAKARVVNVMARELNALAEARNVAVVVTNQXXXXXXXXXXXXXXXXXXXXXXXAPTLGESWAPGPAVRLLL-WTNDMGLRCATLQKHPGQAHSTVAFRVTTMGIRDV 386 IITFC A+D +LGGGVQ ++ EI G PG GKTQ+ +QLA+D QIP F G G+AVFIDTEG+F+ +R A++ A + H Q I ++Q + +L+++L +++ RC + EL+ + LP FL +V LV++D IA PFR D E + R++N +A++L ++A A +AVV+TNQ P LGESW +RL+ W N R ATL K P Q STV F +T G RDV Sbjct: 91 IITFCSALDDILGGGVQLTKITEICGAPGVGKTQLCMQLAVDVQIPECFGGLAGEAVFIDTEGSFIVDRVADIATACVQHCQLIAETHQ--------EEDFQKSLETFSLESILSHIYYFRCHDYTELLAQVYLLPDFLSEHSKVQLVIVDGIAFPFRHD----LEDLSLRTRLLNGLAQQLISIANAHKLAVVLTNQ-----------MTTRIGQSQSMLVPALGESWGHAATIRLIFHWDNKQ--RLATLYKSPSQKESTVPFHITPNGFRDV 340
BLAST of NO04G00810 vs. NCBI_GenBank
Match: XP_007057708.1 (PREDICTED: DNA repair protein RAD51 homolog 3 [Chelonia mydas]) HSP 1 Score: 178.7 bits (452), Expect = 3.700e-41 Identity = 112/294 (38.10%), Postives = 157/294 (53.40%), Query Frame = 0 Query: 93 SALDLLKAARQPATSTGSKIITFCRAIDTMLGGGVQRGQLMEIVGIPGSGKTQVGIQLAIDAQIPRSFRGAGGKAVFIDTEGAFMAERAAEMGQALIDHLQRILASNQCKXXXXXXXXXXXXDVAGLTLKTVLGNVWVLRCLNDAELMQTLQHLPAFLDSEPEVVLVVIDSIALPFRQDKMFQTESAVAKARVVNVMARELNALAEARNVAVVVTNQXXXXXXXXXXXXXXXXXXXXXXXAPTLGESWAPGPAVRLLL-WTNDMGLRCATLQKHPGQAHSTVAFRVTTMGIRDV 386 SAL+LL+ + IITFC A+D +LGGGVQ ++ EI G PG GKTQ+ +QLA+D QIP F G G+AVFIDTEG+FM +R ++ A + H Q I ++Q + +L+++L +++ RC + EL+ + LP FL +V LV++D IA PFR D E + R++N +A++L ++A A +AVV+TNQ P LGESW +RL+ W N R ATL K P Q STV F +T G RDV Sbjct: 77 SALELLEQEQSQGF-----IITFCSALDDILGGGVQLTKITEICGAPGVGKTQLCMQLAVDVQIPECFGGLAGEAVFIDTEGSFMVDRVVDIATACVQHCQLIAETHQ--------EEDFQKSLETFSLESILSHIYYFRCHDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHD----FEDLSLRTRLLNGLAQQLISIANAHKLAVVLTNQ-----------MTTRIGQSQSMLVPALGESWGHAATIRLIFHWENKQ--RLATLYKSPSQKESTVPFHITPHGFRDV 340
BLAST of NO04G00810 vs. NCBI_GenBank
Match: XP_018597458.1 (PREDICTED: DNA repair protein RAD51 homolog 3 isoform X1 [Scleropages formosus] >KPP75301.1 DNA repair protein RAD513-like [Scleropages formosus]) HSP 1 Score: 178.3 bits (451), Expect = 4.800e-41 Identity = 118/321 (36.76%), Postives = 171/321 (53.27%), Query Frame = 0 Query: 66 VDLIRTVLSEADESLNTPPSSSLPLPTSALDLLKAARQPATSTGSKIITFCRAIDTMLGGGVQRGQLMEIVGIPGSGKTQVGIQLAIDAQIPRSFRGAGGKAVFIDTEGAFMAERAAEMGQALIDHLQRILASNQCKXXXXXXXXXXXXDVAGLTLKTVLGNVWVLRCLNDAELMQTLQHLPAFLDSEPEVVLVVIDSIALPFRQDKMFQTESAVAKARVVNVMARELNALAEARNVAVVVTNQXXXXXXXXXXXXXXXXXXXXXXXAPTLGESWAPGPAVRLLL-WTNDMGLRCATLQKHPGQAHSTVAFRVTTMGIRDV 386 VD+++ V + D+ + P L +AL+L + + GS I+TFC A+D++LGGG+ G+ E+ G PG GKTQ+ IQLA+D QIP F G GG AV+IDTEG+F+ +R +M +A + H + + + + G TL+T+L N+++ RC + EL+ + LP FL PEV LVVIDSIA PFR D E + R++N +A++L +A N+AVV+TNQ P LGESW RL+L W R A+L K P +TV +++T G RDV Sbjct: 49 VDVLQEVRGKRDQGV--APGGGL----TALELFEKEQ----GLGS-IVTFCSALDSVLGGGLPVGKTSEVCGAPGVGKTQLCIQLAVDVQIPLCFGGLGGHAVYIDTEGSFLVQRVVDMAEAAVKHCSLLAEDTEQREA-----------LKGFTLETILSNLFLFRCHDYVELLAEIYLLPDFLAQHPEVRLVVIDSIAFPFRHD----FEDLSQRTRLLNGLAQQLIQMATQHNIAVVLTNQ-----------MTTKVGNGQSKLVPALGESWGHAATQRLILHWEGQQ--RLASLYKSPSHPEATVPYQITGEGFRDV 330
BLAST of NO04G00810 vs. NCBI_GenBank
Match: XP_415870.4 (PREDICTED: DNA repair protein RAD51 homolog 3 isoform X1 [Gallus gallus]) HSP 1 Score: 178.3 bits (451), Expect = 4.800e-41 Identity = 131/371 (35.31%), Postives = 183/371 (49.33%), Query Frame = 0 Query: 17 PATQGALRRKGFRKAGELREALQKGKGEDHPILTASDLATRAFTPTTSDVDLIRTVLSE-ADESLNTPPSSSLPLPTSALDLLKAARQPATSTGSKIITFCRAIDTMLGGGVQRGQLMEIVGIPGSGKTQVGIQLAIDAQIPRSFRGAGGKAVFIDTEGAFMAERAAEMGQALIDHLQRILASNQCKXXXXXXXXXXXXDVAGLTLKTVLGNVWVLRCLNDAELMQTLQHLPAFLDSEPEVVLVVIDSIALPFRQDKMFQTESAVAKARVVNVMARELNALAEARNVAVVVTNQXXXXXXXXXXXXXXXXXXXXXXXAPTLGESWAPGPAVRLLL-WTNDMGLRCATLQKHPGQAHSTVAFRVTTMGIRDV 386 PA + L GF+ A EL E G ++ I L + ++ V E A ++ T S +AL+LL+ + T IITFC A+D +LGGGVQ ++ EI G PG GKTQ+ +QLA+D QIP F G G+AVFIDTEG+FM +RAA++ A + H Q I ++Q + +L+++L +++ RC + EL+ + LP FL +V LVVID IA PFR D E + R++N +A++L +A AVV+TNQ P LGESW VRL+ W N R ATL K P Q ST+ + +T G RDV Sbjct: 12 PALRARLLAAGFQTAQELLETGPCGLSKEIGISREEAL------------EALQVVRQECAGDAAKTAGGSGSTRKCTALELLEEEQ-----TQGFIITFCSALDNILGGGVQLTKITEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRAADIATACVRHCQLIAEAHQ--------EEDHLQALETFSLESILSHIYYFRCRDYIELLAQVYLLPDFLSEHSKVRLVVIDGIAFPFRHD----FEDLSLRTRLLNGLAQQLIIIANDHKSAVVLTNQ-----------MTTRFGQNQSMLVPALGESWGHAATVRLIFHWDNTQ--RLATLYKSPSQKESTIPYNITPQGFRDV 340
BLAST of NO04G00810 vs. NCBI_GenBank
Match: XP_010137856.1 (PREDICTED: DNA repair protein RAD51 homolog 3, partial [Buceros rhinoceros silvestris]) HSP 1 Score: 177.9 bits (450), Expect = 6.300e-41 Identity = 116/309 (37.54%), Postives = 162/309 (52.43%), Query Frame = 0 Query: 78 ESLNTPPSSSLPLPTSALDLLKAARQPATSTGSKIITFCRAIDTMLGGGVQRGQLMEIVGIPGSGKTQVGIQLAIDAQIPRSFRGAGGKAVFIDTEGAFMAERAAEMGQALIDHLQRILASNQCKXXXXXXXXXXXXDVAGLTLKTVLGNVWVLRCLNDAELMQTLQHLPAFLDSEPEVVLVVIDSIALPFRQDKMFQTESAVAKARVVNVMARELNALAEARNVAVVVTNQXXXXXXXXXXXXXXXXXXXXXXXAPTLGESWAPGPAVRLLL-WTNDMGLRCATLQKHPGQAHSTVAFRVTTMGIRDV 386 ++ T S +AL+LL + S GS IITFC A+D++LGGGVQ ++ EI G PG GKTQ+ +QLA+D QIP F G G+AVFIDTEG+FM +R +M A + H Q I ++Q + +L+++L +++ RC + EL+ + LP FL +V LVV+D IA PFR D E + R++N +A++L +A AVV+TNQ P LGESW VRL+ W N R ATL K P Q ST+ + +T+ G RDV Sbjct: 49 DAARTAGGSGTTRQCTALELLAEEQ----SQGS-IITFCSALDSILGGGVQLTKITEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDMASACVQHCQLIAEAHQ--------EEDHIKALESFSLESILSHIYYFRCRDYIELLAQVYLLPDFLSEHSKVRLVVVDGIAFPFRHD----FEDLSLRTRLLNGLAQQLMIIANDHKAAVVLTNQ-----------MTTRIGQSQSTLVPALGESWGHAATVRLIFHWDNSQ--RLATLYKSPSQKESTIPYHITSHGFRDV 327
BLAST of NO04G00810 vs. NCBI_GenBank
Match: XP_005298812.1 (DNA repair protein RAD51 homolog 3 isoform X1 [Chrysemys picta bellii] >XP_023955443.1 DNA repair protein RAD51 homolog 3 isoform X1 [Chrysemys picta bellii] >XP_023955444.1 DNA repair protein RAD51 homolog 3 isoform X1 [Chrysemys picta bellii]) HSP 1 Score: 177.6 bits (449), Expect = 8.200e-41 Identity = 106/275 (38.55%), Postives = 149/275 (54.18%), Query Frame = 0 Query: 112 IITFCRAIDTMLGGGVQRGQLMEIVGIPGSGKTQVGIQLAIDAQIPRSFRGAGGKAVFIDTEGAFMAERAAEMGQALIDHLQRILASNQCKXXXXXXXXXXXXDVAGLTLKTVLGNVWVLRCLNDAELMQTLQHLPAFLDSEPEVVLVVIDSIALPFRQDKMFQTESAVAKARVVNVMARELNALAEARNVAVVVTNQXXXXXXXXXXXXXXXXXXXXXXXAPTLGESWAPGPAVRLLL-WTNDMGLRCATLQKHPGQAHSTVAFRVTTMGIRDV 386 IITFC A+D +LGGGVQ ++ EI G PG GKTQ+ +QLA+D QIP F G G+AVFIDTEG+FM +R ++ A + H Q I ++Q + +L+++L +++ RC + EL+ + LP FL +V LV++D IA PFR D E + R++N +A++L ++A A +AVV+TNQ P LGESW +RL+ W N R ATL K P Q ST+ F +T G RDV Sbjct: 90 IITFCSALDDILGGGVQLTKITEICGAPGVGKTQLCMQLAVDVQIPECFGGLAGEAVFIDTEGSFMVDRVVDIAAACVQHCQLIAETHQ--------EEDFQKSLETFSLESILSHIYYFRCHDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHD----FEDLSLRTRLLNGLAQQLISIANAHKLAVVLTNQ-----------MTTRIGQSQSMLVPALGESWGHAATIRLIFHWDNKQ--RLATLYKSPSQKESTIPFHITPHGFRDV 339
BLAST of NO04G00810 vs. NCBI_GenBank
Match: XP_016394587.1 (PREDICTED: DNA repair protein RAD51 homolog 3 [Sinocyclocheilus rhinocerous]) HSP 1 Score: 177.6 bits (449), Expect = 8.200e-41 Identity = 113/292 (38.70%), Postives = 160/292 (54.79%), Query Frame = 0 Query: 93 SALDLLKAARQPATSTGSKIITFCRAIDTMLGGGVQRGQLMEIVGIPGSGKTQVGIQLAIDAQIPRSFRGAGGKAVFIDTEGAFMAERAAEMGQALIDHLQRILASNQCKXXXXXXXXXXXXDVAGLTLKTVLGNVWVLRCLNDAELMQTLQHLPAFLDSEPEVVLVVIDSIALPFRQDKMFQTESAVAKARVVNVMARELNALAEARNVAVVVTNQXXXXXXXXXXXXXXXXXXXXXXXAPTLGESWAPGPAVRLLLWTNDMGLRCATLQKHPGQAHSTVAFRVTTMGIRD 385 +ALDLL + + GS I+TFC A+D LGGGV G+ EI G PG GKTQ+ +QLA+D QIP F G GGKA++IDTEG+F+ +R A+M +A + H + + + + LT++ +L N++++RC + EL+ + LP FL PEV LVVIDSIA PFR D E + R++N +A++L LA +VAVV+TNQ P LGESW RL+L + R A+L K P Q +T+ +++T G RD Sbjct: 72 TALDLLHQEQ----ALGS-IVTFCSALDDALGGGVPVGKTTEICGSPGVGKTQLCMQLAVDVQIPVCFGGLGGKALYIDTEGSFLVQRVADMAEAAVQHCTLLAEDTEQRQA-----------LEELTVEKILSNIFLVRCHDYVELLAEVYLLPDFLSEHPEVRLVVIDSIAFPFRHD----FEDLSQRTRLLNGLAQQLIQLATQHSVAVVLTNQ-----------MTTRVSNGQSKLVPALGESWGHAATQRLILHWEGL-RRLASLYKSPSQMEATIQYQITVQGFRD 331
BLAST of NO04G00810 vs. NCBI_GenBank
Match: XP_024067055.1 (DNA repair protein RAD51 homolog 3 [Terrapene mexicana triunguis]) HSP 1 Score: 177.6 bits (449), Expect = 8.200e-41 Identity = 106/275 (38.55%), Postives = 149/275 (54.18%), Query Frame = 0 Query: 112 IITFCRAIDTMLGGGVQRGQLMEIVGIPGSGKTQVGIQLAIDAQIPRSFRGAGGKAVFIDTEGAFMAERAAEMGQALIDHLQRILASNQCKXXXXXXXXXXXXDVAGLTLKTVLGNVWVLRCLNDAELMQTLQHLPAFLDSEPEVVLVVIDSIALPFRQDKMFQTESAVAKARVVNVMARELNALAEARNVAVVVTNQXXXXXXXXXXXXXXXXXXXXXXXAPTLGESWAPGPAVRLLL-WTNDMGLRCATLQKHPGQAHSTVAFRVTTMGIRDV 386 IITFC A+D +LGGGVQ ++ EI G PG GKTQ+ +QLA+D QIP F G G+AVFIDTEG+FM +R ++ A + H Q I ++Q + +L+++L +++ RC + EL+ + LP FL +V LV++D IA PFR D E + R++N +A++L ++A A +AVV+TNQ P LGESW +RL+ W N R ATL K P Q ST+ F +T G RDV Sbjct: 91 IITFCSALDDILGGGVQLTKITEICGAPGVGKTQLCMQLAVDVQIPECFGGLAGEAVFIDTEGSFMVDRVVDIATACVQHCQLIAETHQ--------EEDFQKSLETFSLESILSHIYYFRCHDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHD----FEDLSLRTRLLNGLAQQLISIANAHKLAVVLTNQ-----------MTTRIGQSQSMLVPALGESWGHAATIRLIFHWDNKQ--RLATLYKSPSQKESTIPFHITPHGFRDV 340
BLAST of NO04G00810 vs. NCBI_GenBank
Match: XP_008840900.1 (PREDICTED: DNA repair protein RAD51 homolog 3 isoform X3 [Nannospalax galili]) HSP 1 Score: 177.2 bits (448), Expect = 1.100e-40 Identity = 106/292 (36.30%), Postives = 153/292 (52.40%), Query Frame = 0 Query: 93 SALDLLKAARQPATSTGSKIITFCRAIDTMLGGGVQRGQLMEIVGIPGSGKTQVGIQLAIDAQIPRSFRGAGGKAVFIDTEGAFMAERAAEMGQALIDHLQRILASNQCKXXXXXXXXXXXXDVAGLTLKTVLGNVWVLRCLNDAELMQTLQHLPAFLDSEPEVVLVVIDSIALPFRQDKMFQTESAVAKARVVNVMARELNALAEARNVAVVVTNQXXXXXXXXXXXXXXXXXXXXXXXAPTLGESWAPGPAVRLLLWTNDMGLRCATLQKHPGQAHSTVAFRVTTMGIRD 385 +AL+LL+ T IITFC A+D +LGGG+ + EI G+PG GKTQ+ +QLA+D QIP F G G+AVFIDTEG+FM +R ++ A I HL I +++ + TL+ +L +++ RC + EL+ + LP FL +V LV+IDSIA PFR D + + R++N +A+++ +LA +AV++TNQ P LGESW +RL+ RCA L K P Q ST+ F++T G RD Sbjct: 77 TALELLEQEH-----TQGFIITFCSALDNILGGGIPLMKTTEICGVPGVGKTQLCLQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAGTDK--------EEEHQKALEDFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHSKVRLVIIDSIAFPFRHD----LDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQ-----------MTTKIDKNQALLVPALGESWGHAATIRLIFHWEQKQSRCAVLYKSPSQKESTILFQITPQGFRD 340
BLAST of NO04G00810 vs. NCBI_GenBank
Match: XP_016338477.1 (PREDICTED: DNA repair protein RAD51 homolog 3 [Sinocyclocheilus anshuiensis]) HSP 1 Score: 176.8 bits (447), Expect = 1.400e-40 Identity = 112/292 (38.36%), Postives = 160/292 (54.79%), Query Frame = 0 Query: 93 SALDLLKAARQPATSTGSKIITFCRAIDTMLGGGVQRGQLMEIVGIPGSGKTQVGIQLAIDAQIPRSFRGAGGKAVFIDTEGAFMAERAAEMGQALIDHLQRILASNQCKXXXXXXXXXXXXDVAGLTLKTVLGNVWVLRCLNDAELMQTLQHLPAFLDSEPEVVLVVIDSIALPFRQDKMFQTESAVAKARVVNVMARELNALAEARNVAVVVTNQXXXXXXXXXXXXXXXXXXXXXXXAPTLGESWAPGPAVRLLLWTNDMGLRCATLQKHPGQAHSTVAFRVTTMGIRD 385 +ALDLL + + GS I+TFC A+D LGGG+ G+ EI G PG GKTQ+ +QLA+D QIP F G GGKA++IDTEG+F+ +R A+M +A + H + + + + LT++ +L N++++RC + EL+ + LP FL PEV LVVIDSIA PFR D E + R++N +A++L LA +VAVV+TNQ P LGESW RL+L + R A+L K P Q +T+ +++T G RD Sbjct: 72 TALDLLHQEQ----ALGS-IVTFCSALDDALGGGLPVGKTTEICGAPGVGKTQLCMQLAVDVQIPVCFGGLGGKALYIDTEGSFLVQRVADMAEAAVQHCTLLAEDTEQRQA-----------LEELTVEKILSNIFLVRCHDYVELLAEVYLLPDFLSEHPEVRLVVIDSIAFPFRHD----FEDLSQRTRLLNGLAQQLIQLATQHSVAVVLTNQ-----------MTTRVSNGQSKLVPALGESWGHAATQRLILHWEGL-RRLASLYKSPSQMEATIQYQITVQGFRD 331 The following BLAST results are available for this feature:
BLAST of NO04G00810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G00810 ID=NO04G00810|Name=NO04G00810|organism=Nannochloropsis oceanica|type=gene|length=2202bpback to top protein sequence of NO04G00810.1 >NO04G00810.1-protein ID=NO04G00810.1-protein|Name=NO04G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=417bpback to top Synonyms
Publications
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