NO04G00800, NO04G00800 (gene) Nannochloropsis oceanica

Overview
NameNO04G00800
Unique NameNO04G00800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1045
Alignment locationchr4:272299..273343 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:272299..273343 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0033617mitochondrial respiratory chain complex IV assembly
GO:0009060aerobic respiration
GO:0016043cellular component organization
GO:0006091generation of precursor metabolites and energy
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR022533Cox20
Homology
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BLAST of NO04G00800 vs. NCBI_GenBank
Match: XP_005854745.1 (hypothetical protein NGA_0409900 [Nannochloropsis gaditana CCMP526] >EKU21616.1 hypothetical protein NGA_0409900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 167.5 bits (423), Expect = 2.600e-38
Identity = 81/121 (66.94%), Postives = 99/121 (81.82%), Query Frame = 0 
Query:    1 MSSTVQDSPPASSASTNSSPEPSFLSKLSNTIETAPCFRVPLMWGIACGLAAGLHKFRVHRASPQAIMNACDFAVLGMGVSTSLGWWMCMRNRRQEEEEIGKMMAVQGFKPMTELEKEEQK 122
            M+     SP     S  SS  PSF+S+L+ +IE APCFRVPLMWGIACG+AAGLHKFRVHRASPQA++NACDFAVLGMG+STSLGWW+CMR +R+EEEE+  +MA QGFKPM ELE++ ++
Sbjct:    1 MAQVPATSPSPDGPSPPSS--PSFVSRLTASIEAAPCFRVPLMWGIACGIAAGLHKFRVHRASPQAVLNACDFAVLGMGISTSLGWWVCMRRQRKEEEELKLIMAAQGFKPMAELEEKAER 119
The following BLAST results are available for this feature:
BLAST of NO04G00800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854745.12.600e-3866.94hypothetical protein NGA_0409900 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00800.1NO04G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00800.1NO04G00800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00800 ID=NO04G00800|Name=NO04G00800|organism=Nannochloropsis oceanica|type=gene|length=1045bp
ATAGACACAGGGAATAAAACAACAGCAGCGCCAACAGCAGCGTCAAGACT
ACAATGTCTAGCACGGTTCAGGACTCCCCGCCCGCCTCATCCGCCTCCAC
GAACTCCTCCCCCGAACCCTCCTTTCTCTCCAAGCTCTCCAACACCATCG
AGACGGCGCCTTGCTTCCGGGTCCCGCTCATGTGGGGTATTGCATGTGGC
CTGGCCGCAGGTCTGCACAAGTTTCGCGTTCATCGGGCGTCGCCACgtac
gttttggtcgggggtgaaagtggagtagcggttgggtagggaggggtcat
cgaacaaagtgaggcgagacctcagctgctcgaggccatggctctcctcc
aaaaaaaaacaccccattgtcatgtttattgtccagcagttgtgttattc
tcttccttggaaagaccgggacagacgccggccaagccgaaggctgttga
tttaatctactcaaccctcactccacaccctcccgcttccatctcaaata
cccctcactcacccgatcaccctcaactacccacgtccccaaactaccag
AGGCCATTATGAACGCCTGTGACTTTGCAGTGTTGGGCATGGGGGTCTCC
ACCTCCTTGGGTTGGTGGATGTGCATGCGAAATCGGCGGCAGGAAGAGGA
GGAAATCGGCAAGATGATGGCCGTGCAAGGATTCAAGCCCATGACTGAGT
TGGAAAAAGAAGAACAAAAGTCAAAAAAGTGATTGTGAAGGGAGTATGTG
GGAACATGAGACGTAGACGCATTTGCTTGTAGATATTGGAGAGAAATTAA
TCCAGTACGGCGTGATTGCCGCTCACAATTGGTTTGCGAGTAGGGATGGA
TGGACGGTGAGGGGGAGGGAGGGAAGGATTCAGTGATTTGTAAATGAGAC
GAAAAGAGCTCTGTCGATGAGGGATGTCTTTTGGAAAATCATCAAGGGAA
GAGTAGTGGCCGCCAGGTGAGGGACTGAAATAATGTATGTCGATAAGAAA
TTGTATTTTTTTTAAATTAACGAAGACACCAAATCCAAACCGGGT
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protein sequence of NO04G00800.1

>NO04G00800.1-protein ID=NO04G00800.1-protein|Name=NO04G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MSSTVQDSPPASSASTNSSPEPSFLSKLSNTIETAPCFRVPLMWGIACGL
AAGLHKFRVHRASPQAIMNACDFAVLGMGVSTSLGWWMCMRNRRQEEEEI
GKMMAVQGFKPMTELEKEEQKSKK*
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Synonyms
Publications