NO04G00720, NO04G00720 (gene) Nannochloropsis oceanica

Overview
NameNO04G00720
Unique NameNO04G00720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2454
Alignment locationchr4:248570..251023 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:248570..251023 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G00720 vs. NCBI_GenBank
Match: EWM28497.1 (hypothetical protein Naga_100058g26 [Nannochloropsis gaditana])

HSP 1 Score: 155.6 bits (392), Expect = 1.600e-34
Identity = 75/110 (68.18%), Postives = 97/110 (88.18%), Query Frame = 0 
Query:    1 MSDTINTIINAVKEMVNDMGDKVTTAVKESLHVPENLGPLVTTLKDLVSTGKKFAAGEGSSDELAGLTTQLGQFSTMVDTLDDGPLKKMVLALRDQAMGQLKDVKGAEKI 111
            M+D +NTII+AVKEMV D+G+KV  AVK++LHVP+N  P+V TLK+LV++G+KFA+GEGS++EL GL+T+L  FS MVDTL+DGPLKKMVL LRDQA+ QLKDVKG+EK+
Sbjct:    1 MADAVNTIIDAVKEMVQDVGEKVGAAVKDALHVPDNFAPMVQTLKELVTSGQKFASGEGSTEELNGLSTKLSSFSAMVDTLEDGPLKKMVLTLRDQAVSQLKDVKGSEKV 110
The following BLAST results are available for this feature:
BLAST of NO04G00720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800200022002400SequenceEWM28497.1
Match NameE-valueIdentityDescription
EWM28497.11.600e-3468.18hypothetical protein Naga_100058g26 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL077nonsL077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009759NSK009759Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00720.1NO04G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628053gene_1852Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100058g26gene2101Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00720.1NO04G00720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00720 ID=NO04G00720|Name=NO04G00720|organism=Nannochloropsis oceanica|type=gene|length=2454bp
GGTTGAGCGAGCTGGCGAAAGGTCGGCGAGCGGATCATCAGGGGCTGTTG
TCTGTTCGTTTGTATAGTACTTGCCCTTCCTGTCCGCAATATATACTCCT
ACAGGCCTGCATTTCAAGCATTGTCTCTGCGTGATCATCTTACATAGGAT
ATTGGCTATAGCGTGGAAGCATTGGAAGGTCAGTTTGGCCATTATCAAGC
ATTTACGGAAGAGAGCGGTGGTGACGGACAATTTTAATGCTGCGCTTCCG
AAGGGTTGTTGATGATTTGCCCACCACTGCGACTGTCGGACATAGACAGT
GCGGGGGCATGATCACTGCTGACAATATGACTGTATGCAGAGCAACTGGC
TTAACTATCCTCAGGGGTGCCTTGTGCCAACGAGACTTGTCCCTCTTTTA
TGGGGTTGCACGCTGCCCCATCTTGTCTGAAGGGATACACTCCTCCCCAC
ATGCACCGGACACTACCACCATTACACGGCTACGATCACGGCAACATACA
CCTCCGGTCTTCGCTTCGTCCACATGCTGCGAACGTGCCACGTGCCTACA
TGTGGTGTCGCCCTGTGCTGCTGTTTGCGCTGCTGTTGTGCCCGGGGAGG
TATTAGCACCTGGGGCCTCTTACGCGCCATGCTCATTTCCCTGACGTGAC
AGCTTACTTTTAAGCGCCAATTTTCGACAGTAGTCACAATGTTATTGTGT
TACTCACTATAGGTACTTGGCGGAAGACCTACTCATAGTGTGTCCTGTAC
TGTTGCGTTTTCTTCCTTGCATTAACCCTCCCATCACGCCCCATTTTTCC
CTCCATCCCCCCATTCCACATGAACAGCCAACACTCTCCACCTTACCACC
ACCCAAGCCAAACAAATGTCCGACACGATTAACACCATTATCAACGCGGT
CAAGGAGATGGTCAACGACATGGGTGACAAGGTAACGACTGCCGTCAAGG
AGTCCCTCCACGTGCCTGAGAATTTGGGGCCCCTCGTGACAACCCTCAAG
GACCTCGTCAGCACCGGCAAGAAGgttcgttttaccatgtatccccactt
ccttaccttcttctgtctcttcctttctctcgggccattcaaaacccgac
ttcccttcctcgttccctccctcccctccagTTCGCCGCCGGCGAAGGCA
GCAGTGACGAACTCGCAGGCCTTACCACTCAACTAGGCCAATTTTCCACG
ATGGTCGACACACTAGATGATGGCCCTTTGAAAAAAATGGTGCTGGCGCT
CCGTGATCAGGCCATGGGACAGCTGAAAGATGTGAAGGGCGCGGAAAAGg
tccgtggctagttgttttcccccttcttttttctctttgttccaatcctc
tctccttttggtgattcccattcctcctctatgaatttgtttcaatcgag
gtaacccacatcgatcctcccgtcctttctcacatccttttctatctccg
tgcatcattactccctagcccatcattatcacccacgcctacctcccttc
cctcctctctcctcccggaacaaatcagATCATGAAGATCCTTGCCGTTC
TAGGGACCGACTCCAGCGCCACTGCCACCCCATCTGCCTCTCCCAGCCCT
CCCGTTGTCGAGGCATCCATCGATACACCCGCTACTGCTGCTGCTCCTGC
TCCTGCTGCTTCCGCTGCTGCTGCTGCTGCTGCTCCTGCAACACCCGCGG
TTGAGGAGGCAGTTGCTTCAACGCTTGCCGCGGCGGTGGCAGAAACTGTT
CCGGCAGTAGCACCAACAGCCACGGCCACAGCTGCGATTATCCCTCCTAC
TCAGGCGATGACATAAGCCTGGAGTGGGAAGGAAAGTCGGAAGGAAAGAT
GCGGGGGTTTCACTCTTCCTATGTCTCTTTTGGAGGAACCGAAGTGAGGA
GGGTCAGGAAGAGAGGAAGCAAATTAGGAGCTTGGATCTGAAACGGAGGA
TTTGGATTAATTTTATTTATTTATTCATTTAAAAAAGGGTTGGAATTTCT
GAGAAAGGAATTTAAGGTGCATATGTGTATGTGAGTGTATGAGTATAATG
TAAGGGTATGGAAGATACCTTCACGTGTGATAGTCTACTATTGATGGTAA
TGATGCTGTGTCTACAATGAAAACACCGACGCCGATGACGACGATACGAG
GCGATGGTGGCAAGGAGGGGAAGGAGGCCGAGGAAGATGTAGAGGAGGAG
GAGAAGGAGGAGGAAGAGATGGAGGAGGAGGAGAAAGGAGGAGAAGGGGC
TTCGCGGCTGAAGCACGGTGACGTGATTTCACTCCTCCTGGTTGTATGTC
TGTTTTCTTATAACTTCGTTGGGCAGAATCGAGGGCGACATGCTCCTGGG
TCTCGGTTGGAAGGTGGGGAGAGGGCGGTGGGACTTGTATCGTCCGAAAC
AGGGAAAAGGGGAACTCGACAAAGAATGAATGATCTTAAGGTAATGGTAA
TGAT
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protein sequence of NO04G00720.1

>NO04G00720.1-protein ID=NO04G00720.1-protein|Name=NO04G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MSDTINTIINAVKEMVNDMGDKVTTAVKESLHVPENLGPLVTTLKDLVST
GKKFAAGEGSSDELAGLTTQLGQFSTMVDTLDDGPLKKMVLALRDQAMGQ
LKDVKGAEKIMKILAVLGTDSSATATPSASPSPPVVEASIDTPATAAAPA
PAASAAAAAAAPATPAVEEAVASTLAAAVAETVPAVAPTATATAAIIPPT
QAMT*
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Synonyms
Publications