NO04G00560, NO04G00560 (gene) Nannochloropsis oceanica

Overview
NameNO04G00560
Unique NameNO04G00560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1136
Alignment locationchr4:197315..198450 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:197315..198450 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL077nonsL077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00560.1NO04G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00560.1NO04G00560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00560 ID=NO04G00560|Name=NO04G00560|organism=Nannochloropsis oceanica|type=gene|length=1136bp
ATGTCCTCGTCAACTGAGACTGCTAAAACCAAGCGACCGGATTGGGCCAA
GCGGAAGAGATCGCAGGGAAGACTGAAGATGAAATGCTCAAAGTGTTGTC
TTCCCGAACGACTGGCGCCTGgttagtaaccgacagttaatgtagtgctc
atcgaaagcctggagcgacagattcgcaacacgtctgaaatcatcgtaag
agcatcactcctggtaaatgaggtgttgcattgcaacttccaacacaact
acaatcgtccagTCGAAAATCAAGTCGCCCTTTCGAAGCTGGGCCAAACG
TTCGTAACCGCCTGCTTCACTGAAGGCTTGAAGTTGCACACCAATTATCT
AACGCGGCTTACCGCAAAGTCGTCAAGGATATTTTCCAGGATAAATTTCA
ATCCgtacgtccacttgagcagtggtgattacaaggttatcactatgggg
gcacagttctactcgacgaattttgcagcgtcgacatggacctcatttgt
tggccgacaacgggattttgtgcaattctggcttcaagatcatggattgg
cgtcacaggaagtgtcggcttactgtgctcaatgactcatgaacggctgg
aaagaaacctgcggtctcccggaaacggcggcacaacgacaatcaggcga
ggaggggggagaggaagagaggaggaaggatgagggaggggggtggggaa
gagggcagaggggaagagaaggaaggggaagagtaagaggatcgccaagg
gcaacatcgacagCAAGAGTAACAGCAACGGCAATAGCACCAGCAACAGC
AGTAGCAATAGCAACAGCAGCAGCAGCAGCAGCTGCTGCAGCAGCAGCAA
CAGCAACAGCAACAGCAACAATGGCACGAACACGAGCACGAGCACGAGCA
CGAGCACCAGCAGCAGCAGGATGGGGGAGGATGGAGAGGGGGCATGCGGC
GCTGGCCCTCTGATGGCAATCCCGGAAAATGTCCGATCCTTCATCAACGA
GGAACGACGGCTTCTAAAACTGGAGGGCTCTGCCTGCCTGGATGTCAAGA
ATAAGACCTCAGTGGAAGGGCTCTTTCTCCCGTATCTGTACCACATCTTG
CACGGGTATCATCAAAGGCATCTGGAGGTACAATGA
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protein sequence of NO04G00560.1

>NO04G00560.1-protein ID=NO04G00560.1-protein|Name=NO04G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MSSSTETAKTKRPDWAKRKRSQGRLKMKCSKCCLPERLAPVENQVALSKL
GQTFVTACFTEGLKLHTNYLTRLTAKSSRIFSRINFNPKSNSNGNSTSNS
SSNSNSSSSSSCCSSSNSNSNSNNGTNTSTSTSTSTSSSRMGEDGEGACG
AGPLMAIPENVRSFINEERRLLKLEGSACLDVKNKTSVEGLFLPYLYHIL
HGYHQRHLEVQ*
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Synonyms
Publications