NO04G00440, NO04G00440 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G00440 vs. NCBI_GenBank
Match: EWM28491.1 (ribosome biogenesis gtp-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 465.7 bits (1197), Expect = 1.400e-127 Identity = 243/304 (79.93%), Postives = 259/304 (85.20%), Query Frame = 0 Query: 60 KLSALMAKQEREAVKKYMEKETKKDLESQAKIRQAQAYMAERAKGGGKDAPWTKSTDGTGSSGGSSQSPPKKKGPKFQQISLTCRQFSIDDIQDVTFEGSHLVDVPFLGLPEVAVFGRSNVGKSSMLNCLTGNNKKVAVVSKTPGRTQQINLFKVHDSNGPVAVLVDLPGYGYAKLPKALQSDIGTQVRQYLSDRPTLRLAVLLMDARRDPQKSDLNMMKYFRAANVPLLVLGTKVDKLNQEEIGPNLGKLNQYFKLPEGMPVAFSSVTGVNKRAVWNAIRDACVGEYLDLSEEAQEANALVQK 364 KL+ALMAKQEREAVKKYME AQ +MA+RAKGGGKDAPW+K D S+QS PKKK FQQISLTCRQFSIDDIQDVTFEGSHL DVPFLGLPEVAVFGRSNVGKSS+LNCL G NKKVAVVSKTPGRTQQINLFKVHDSNGPV+VLVDLPGYGYAKLPKALQSDIG QVR+YLSDRPTLRLAVLLMDARR+PQKSDLNMMKYFRAAN+PLLVL TKVDKL E+I NLG+L+QYFKLP GMPVAFSSVTGVNKRAVW+AIRDACVGEYLDLSEEA A ++ Sbjct: 90 KLAALMAKQEREAVKKYMETXXXXXXXXXXXXXXAQEFMAQRAKGGGKDAPWSKGGD------DSTQSIPKKKARNFQQISLTCRQFSIDDIQDVTFEGSHLDDVPFLGLPEVAVFGRSNVGKSSLLNCLAGINKKVAVVSKTPGRTQQINLFKVHDSNGPVSVLVDLPGYGYAKLPKALQSDIGAQVRRYLSDRPTLRLAVLLMDARREPQKSDLNMMKYFRAANIPLLVLATKVDKLKHEDIEENLGRLHQYFKLPVGMPVAFSSVTGVNKRAVWSAIRDACVGEYLDLSEEAANDRAKTEE 387
BLAST of NO04G00440 vs. NCBI_GenBank
Match: CEL93180.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 169.9 bits (429), Expect = 1.500e-38 Identity = 105/240 (43.75%), Postives = 138/240 (57.50%), Query Frame = 0 Query: 125 SQSPPKKKGPKFQQI-----------SLTCRQFSIDDIQDVTFEGSH--LVDVPFLGLPEVAVFGRSNVGKSSMLNCLTGNNKKVAVV--SKTPGRTQQINLFKVHD-SNGPVAVLVDLPGYGYAK-LPKALQSDIGTQVRQYLSDRPTLRLAVLLMDARRDPQKSDLNMMKYFRAANVPLLVLGTKVDKLNQEEIGPNLGKLNQYFKLPEGMPVAFSSVTGVNKRAVWNAIRDACVGEY 348 + SP K PK Q ++ R F +D+ V+F G + D+P GLPEVA GRSNVGKSSMLN L + A V SKTPGRTQQINLF++ D + VLVDLPGYGY + + K I + + YL R LRL +LL+D+R Q+ D +++ R+ +VP LV TKVD+L E NL +L + +LP PV FSS+TG N +W AI DAC+G+Y Sbjct: 81 ASSPSAKAVPKGLQFIEAVEVSGGSSAVEVRPFEREDVGAVSFIGGYEDSRDLPATGLPEVAFLGRSNVGKSSMLNSLQSRASERAEVRISKTPGRTQQINLFRLSDRRKRGLVVLVDLPGYGYTRSISKEDTKKIRSFLLAYLRKRAELRLFLLLVDSRLPAQEVDADVLANLRSMDVPYLVAATKVDRLKASERDANLARLREELQLPSWQPVPFSSMTGENGPLLWRAISDACIGQY 320
BLAST of NO04G00440 vs. NCBI_GenBank
Match: KOO33370.1 (ribosome biogenesis gtp-binding protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 169.1 bits (427), Expect = 2.600e-38 Identity = 88/181 (48.62%), Postives = 116/181 (64.09%), Query Frame = 0 Query: 164 VPFLGLPEVAVFGRSNVGKSSMLNCLTGN-NKKVAVVSKTPGRTQQINLFKVHDSNGPVAVLVDLPGYGYAKLPKALQSDIGTQVRQYLSDRPTLRLAVLLMDARRDPQKSDLNMMKYFRAANVPLLVLGTKVDKLNQEEIGPNLGKLNQYFKLPEGMPVAFSSVTGVNKRAVWNAIRDAC 344 +P L LPE + GRSNVGKSS LN L G NKK+A VSKTPG T+ INL+++ G V + DLPGYGYAK+ K +Q D Q+ Y+ R L+LAVL +DA+RDPQ+SD ++ + A LV+ TK DKL ++ + +L L + LP P+A SSVTG+ KR VW AI + C Sbjct: 1 MPSLRLPEFTLAGRSNVGKSSALNTLAGRPNKKIAKVSKTPGSTRLINLYRL----GNVCTITDLPGYGYAKVSKEMQDDWRKQIEAYMRRREELKLAVLFVDAQRDPQESDAQLLDFLEAEAKSTLVVATKADKLAKQALQSSLEYLRESLALPSDQPIALSSVTGLGKREVWGAINEIC 177
BLAST of NO04G00440 vs. NCBI_GenBank
Match: CBN74042.1 (YihA6, YihA/EngB-like GTPase [Ectocarpus siliculosus]) HSP 1 Score: 166.8 bits (421), Expect = 1.300e-37 Identity = 94/209 (44.98%), Postives = 130/209 (62.20%), Query Frame = 0 Query: 145 QFSIDDIQDVTFEGSH--LVDV-PFLGLPEVAVFGRSNVGKSSMLNCLTGNNKKVAVVSKTPGRTQQINLFKVHDSNG-PVAVLVDLPGYGYAKLPKALQSDIGTQVRQYLSDRPTLRLAVLLMDARRDPQKSDLNMMKYFRAAN---VPLLVLGTKVDKLNQEEIGPNLGKLNQYFKLPEGMPVAFSSVTGVNKRAVWNAIRDACVGE 347 +F +DI+ V F GS+ ++ P LPE+A GRSNVGKSSMLN L G + VA VSKTPGRT++IN+FK + N V DLPGYGYAK+ K Q I + YL R L+L +LL D+RR+P SD +++Y +L++ TKVDKLN E N+ +L + F+LP G+PV+FS++TG K+ +W+ IR A + Sbjct: 255 KFGANDIRKVEFVGSYDDKEEIWPRTNLPEIAFLGRSNVGKSSMLNTLFG--EPVAKVSKTPGRTRKINIFKAKNGNDKDVCYFADLPGYGYAKMSKDKQRTIEKFLGMYLERRSNLKLLILLADSRREPLASDAGVLEYAEDKEDRLYKILLVATKVDKLNTMESVVNIKRLQEAFELPPGLPVSFSAITGQGKKEIWSYIRQAAAAQ 461
BLAST of NO04G00440 vs. NCBI_GenBank
Match: XP_005840807.1 (hypothetical protein GUITHDRAFT_64138 [Guillardia theta CCMP2712] >EKX53827.1 hypothetical protein GUITHDRAFT_64138 [Guillardia theta CCMP2712]) HSP 1 Score: 161.8 bits (408), Expect = 4.200e-36 Identity = 84/187 (44.92%), Postives = 116/187 (62.03%), Query Frame = 0 Query: 156 FEGSHLVDVPFLGLPEVAVFGRSNVGKSSMLNCLTGNNKKVAVVSKTPGRTQQINLFKVHDSNGPVAVLVDLPGYGYAKLPKALQSDIGTQVRQYLSDRPTLRLAVLLMDARRDPQKSDLNMMKYFRAANVPLLVLGTKVDKLNQEEIGPNLGKLNQYFKLPEGMPVAFSSVTGVNKRAVWNAIRDA 343 F GS + P L +PEVA GRSNVGKSSMLNCLTG+ K+AV SKTPGRT++INLF D+ G +VDLPG GYAK+ K ++ + ++ QY+ R L+L V+L+D R +PQ+ D+ + + +P +++GTK DKL+ EI K + + G ++FSS TG K VW I A Sbjct: 7 FLGSFDGEPPLLPVPEVAFAGRSNVGKSSMLNCLTGS--KLAVTSKTPGRTRRINLFVHKDNTGRALGIVDLPGLGYAKMSKGIKEKLSDEITQYIKTREALKLLVILIDPRLEPQEQDVLLAELCLDKKLPFVMVGTKADKLSNNEIEIAFSKYEEAIGIGTGQLISFSSKTGEGKAFVWKQINQA 191
BLAST of NO04G00440 vs. NCBI_GenBank
Match: XP_005771968.1 (GTP-binding protein engB [Emiliania huxleyi CCMP1516] >EOD19539.1 GTP-binding protein engB [Emiliania huxleyi CCMP1516]) HSP 1 Score: 159.8 bits (403), Expect = 1.600e-35 Identity = 79/183 (43.17%), Postives = 112/183 (61.20%), Query Frame = 0 Query: 164 VPFLGLPEVAVFGRSNVGKSSMLNCLTGNNKKVAVVSKTPGRTQQINLFKVHDSNGPVAVLVDLPGYGYAKLPKALQSDIGTQVRQYLSDRPTLRLAVLLMDARRDPQKSDLNMMKYFRAANVPLLVLGTKVDKLNQEEIGPNLGKLNQYFKLPEGMPVAFSSVTGVNKRAVWNAIRDACVGE 347 +PF LPEV + GRSNVGKSS LN L+G K+VA VSKTPGRT+ INLF V G + DLPGYG+AK+ LQ + V YL R LR AV+ +D++R+PQ D ++ + +P +V+ TKVDK+ ++ + L + LP P+ FSS TGV ++ +W +++ C+ E Sbjct: 24 MPFSPLPEVTLVGRSNVGKSSALNALSGRRKRVAQVSKTPGRTRLINLFSV----GSALTVTDLPGYGFAKVSAELQEEWRRNVEAYLRQRENLRAAVVFIDSQREPQAVDAQILDFLAFHEIPSVVVATKVDKVRPSQLDNCMAALRRGLALPPDQPIPFSSTTGVGRKELWQYLQEICLAE 202
BLAST of NO04G00440 vs. NCBI_GenBank
Match: PCJ62445.1 (YihA family ribosome biogenesis GTP-binding protein [Candidatus Hydrogenedentes bacterium]) HSP 1 Score: 147.9 bits (372), Expect = 6.300e-32 Identity = 78/178 (43.82%), Postives = 111/178 (62.36%), Query Frame = 0 Query: 165 PFLGLPEVAVFGRSNVGKSSMLNCLTGNNKKVAVVSKTPGRTQQINLFKVHDSNGPVAVLVDLPGYGYAKLPKALQSDIGTQVRQYLSDRPTLRLAVLLMDARRDPQKSDLNMMKYFRAANVPLLVLGTKVDKLNQEEIGPNLGKLNQYFKLPEGMPV-AFSSVTGVNKRAVWNAIRD 342 P +GLPE+A GRSNVGKSS++NC+ N K +A S PG+TQ IN F ++ +VDLPGYG+AK+P A++ + G + YLS+R LR+A++L+DAR P D++M+ A VP LV+ TKVDKL + E N+ ++ +L E + FSS TG K+ +W I D Sbjct: 19 PKMGLPEIAFVGRSNVGKSSLMNCIL-NRKNLAKTSSRPGKTQTINFFDINQK----FYVVDLPGYGFAKVPVAVKENWGRVMTSYLSNREPLRMAMVLVDARHKPTDLDMDMLALLDDAEVPTLVVATKVDKLKRTERKRNMDRIRLALELDEDAEILPFSSETGEGKKELWEIISD 191
BLAST of NO04G00440 vs. NCBI_GenBank
Match: OHE23399.1 (YihA family ribosome biogenesis GTP-binding protein [Syntrophobacterales bacterium RBG_19FT_COMBO_59_10]) HSP 1 Score: 147.1 bits (370), Expect = 1.100e-31 Identity = 75/179 (41.90%), Postives = 111/179 (62.01%), Query Frame = 0 Query: 165 PFLGLPEVAVFGRSNVGKSSMLNCLTGNNKKVAVVSKTPGRTQQINLFKVHDSNGPVAVLVDLPGYGYAKLPKALQSDIGTQVRQYLSDRPTLRLAVLLMDARRDPQKSDLNMMKYFRAANVPLLVLGTKVDKLNQEEIGPNLGKLNQYFKLPEGMP-VAFSSVTGVNKRAVWNAIRDA 343 P LPE+A GRSNVGKSS++N L N + +A S TPGRTQ+IN F V++ VDLPGYGYAK+P+A++ G + YL +R TLRL VL++D RRDP DL ++++ + +P ++ TK+DK+++ ++ + + LP P +AFS+ TG K +W I+ A Sbjct: 19 PPASLPEIAFAGRSNVGKSSLINTLL-NRRGLARTSNTPGRTQEINFFTVNNR----VAFVDLPGYGYAKVPEAIRRHWGPMIETYLRERQTLRLVVLILDVRRDPSGEDLQLIRWLQFYRLPSHIVLTKIDKMSRNQLAQRQRLIGERLGLPAAEPLLAFSAKTGAGKERLWREIKKA 192
BLAST of NO04G00440 vs. NCBI_GenBank
Match: OIP92816.1 (YihA family ribosome biogenesis GTP-binding protein [Syntrophaceae bacterium CG2_30_58_14] >PIV06040.1 YihA family ribosome biogenesis GTP-binding protein [Syntrophobacterales bacterium CG03_land_8_20_14_0_80_58_14] >PJC71975.1 YihA family ribosome biogenesis GTP-binding protein [Syntrophobacterales bacterium CG_4_8_14_3_um_filter_58_8]) HSP 1 Score: 146.4 bits (368), Expect = 1.800e-31 Identity = 75/176 (42.61%), Postives = 108/176 (61.36%), Query Frame = 0 Query: 165 PFLGLPEVAVFGRSNVGKSSMLNCLTGNNKKVAVVSKTPGRTQQINLFKVHDSNGPVAVLVDLPGYGYAKLPKALQSDIGTQVRQYLSDRPTLRLAVLLMDARRDPQKSDLNMMKYFRAANVPLLVLGTKVDKLNQEEIGPNLGKLNQYFKL-PEGMPVAFSSVTGVNKRAVWNAI 340 P GLPE+A GRSNVGKSS++N L N K +A S TPGRTQ+IN F+V++ +DLPGYGYAK+P+A++ G V YL +R TLRL V+++D RRDP DL +M++ + + L+ TK DK+++ E ++ + + PE + FS+ TG K +W I Sbjct: 19 PPAGLPEIAFAGRSNVGKSSLINTLL-NRKGLARTSNTPGRTQEINFFRVNER----FAFIDLPGYGYAKVPEAIRKQWGPMVETYLRERDTLRLVVVILDVRRDPSGEDLQLMQWLQFYRIRFLICLTKTDKVSKNEFANRRRRIEEQIRFSPEPALMTFSAKTGEGKELLWREI 189
BLAST of NO04G00440 vs. NCBI_GenBank
Match: XP_002179307.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC49130.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 144.8 bits (364), Expect = 5.300e-31 Identity = 76/186 (40.86%), Postives = 110/186 (59.14%), Query Frame = 0 Query: 165 PFLGLPEVAVFGRSNVGKSSMLNCLTGNNKKV------AVVSKTPGRTQQINLFKVHDS-NGPVAVLVDLPGYGYAKLPKALQSDIGTQVRQYLSDRPTLRLAVLLMDARRDPQKSDLNMMKYFRAANVPLLVLGTKVDKLNQEEIGPNLGKLNQYFKLPEGMPVAFSSVTGVNKRAVWNAIRDAC 344 P +G+PE+A GRSNVGKSS+LN L+ + +++ A V KTPG T +NL+ + D+ + VDLPG+GYAKL K ++ + YL+ R L L +LL+DARR P D ++ +P++V+ TKVDKLN E+ L ++ LP+G P+ SSVTG R +W I +AC Sbjct: 14 PRIGVPEIAFLGRSNVGKSSLLNRLSSSARQLPTHNDQARVGKTPGATASVNLYALLDAKESQILGWVDLPGFGYAKLSKQVKESVQETAENYLARRQELVLGILLVDARRIPSNDDRAVLAALFDMGIPVVVVATKVDKLNPNELRSGLAEIRDGLGLPDGQPLPVSSVTGEGTRDLWRIILEAC 199 The following BLAST results are available for this feature:
BLAST of NO04G00440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G00440 ID=NO04G00440|Name=NO04G00440|organism=Nannochloropsis oceanica|type=gene|length=1122bpback to top protein sequence of NO04G00440.1 >NO04G00440.1-protein ID=NO04G00440.1-protein|Name=NO04G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bpback to top Synonyms
Publications
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