NO04G00420, NO04G00420 (gene) Nannochloropsis oceanica

Overview
NameNO04G00420
Unique NameNO04G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1458
Alignment locationchr4:168382..169839 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:168382..169839 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00420.1NO04G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563511gene_1823Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100131g3gene2074Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00420.1NO04G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00420 ID=NO04G00420|Name=NO04G00420|organism=Nannochloropsis oceanica|type=gene|length=1458bp
ATGAACTGGTCCTCCTTTTTTTTCTTCTTCTTCTTCTTCCTAGCCGTGCT
TGCCTACACAGGTGCTGCGGTACAAACTCGCAGCGGGGCCGGGCAGCCTA
TTGTCGTAACGCCGCCAATAGCTCCAGTAGCTGTACATTCTGCACCGGCT
ACGCCTACTTTGCGTCTCCTCCCGACGCTAACCCCGGCCGGCGGCAGCGC
TTACTTAGTTGCTAATGTCCAGGACACAGGCGCTGGAGGTCCTAGCAGAG
GCGATGCCGAAGCCGCTGTGGGTGACGTGGTCCTCAAAAGAGATAACGTA
GCTATTGGTACGGCTGATAGTGTAGAGATACGACCGGGATTTGGAGCAGA
TGCTGACAGTCTCCTGCTGCAATATAATCATTCTCCCGTGGAAACCTACA
ACAGGCTGCGTGATACAAGTTATGAAGCGCTGCGATCGGTCCGAGGCATG
CTACTGTGGATTAGGAATGAGATTCAAGCTGTTATCGACCAATGTAAAAA
TATTGTGCTTGCACATCCTTTGGCATTGGACGCTACTGTTTCGGCAATCG
CGGTCATAACCGTCTATAACTATGGACCCACAATTTTGAACTTCGCCTTG
AAAGATATTCAGTGCTACGTGGATGGAAGTGAAGATTACCGCGCCGTACT
GCAAGCGGCCAATCCCCACGCTCCAATGAGTCGATATGAGGAATGGGCTG
TGTCATACCAGGGGCTTGAGGGCTGCCGCACTGGCACCCGTCCCTACCAA
GGCCGGCTACAGGAGGCGCGCCACGCGAAATTTTCTCAAGAGAGAGCAAA
GCAAGAACGCAAATACCAAGACAATTCGCATAGGCACATCCAAGCCTTGC
AATATGTCTATGAAGAGTATGAGGGCACGTGTGATGCCCCTCAGGGTGCC
GATCAGCGGCAACCGCAGGGCACTAAGGCCGGAGCGCACGATGAAGCGAG
TATTTTGAAGTCATGTGAGGATCAAGATGCAGTTTATAGGGCGTCATATA
CCAAGAAGCGAAGGCATGACAAAAATGACATCAAGCCATGGTTGGCGAAA
GAAAGCACGTATGACGAACTAAAAATTGGGGCTCTGGAGATTCATCAAAT
TCTGGACTTGGTCGTGCTTTGTGTGCCTGTTGTCATATATGTCATCTTTG
GGGATAATCAAGAGGTATTATTCGCCTTTTCGAGTCTGTCGCTTTTACTT
GGAATCATCTTTCTCTTCGGGGAGCAATCTTCTTTCTATGAAGACTTTGA
TCGACGTGCACGCGCGGGGGAGTTGGTCGAGCGAAAGGACCAAAATCAAT
TTGTGGCGCTACTGTTCATGATGGGAGTAATCAAAGACCTTGCCATTCTT
CTGGGCAGTCTTGCATTGTTCCAGATATTTGGCCATGTCTGGGTATGGGC
CACTCGTACCTATCCCACCTTGCTGTTGTGCGGTCCATCAGGAATAAGGA
GTAAGTAG
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protein sequence of NO04G00420.1

>NO04G00420.1-protein ID=NO04G00420.1-protein|Name=NO04G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MNWSSFFFFFFFFLAVLAYTGAAVQTRSGAGQPIVVTPPIAPVAVHSAPA
TPTLRLLPTLTPAGGSAYLVANVQDTGAGGPSRGDAEAAVGDVVLKRDNV
AIGTADSVEIRPGFGADADSLLLQYNHSPVETYNRLRDTSYEALRSVRGM
LLWIRNEIQAVIDQCKNIVLAHPLALDATVSAIAVITVYNYGPTILNFAL
KDIQCYVDGSEDYRAVLQAANPHAPMSRYEEWAVSYQGLEGCRTGTRPYQ
GRLQEARHAKFSQERAKQERKYQDNSHRHIQALQYVYEEYEGTCDAPQGA
DQRQPQGTKAGAHDEASILKSCEDQDAVYRASYTKKRRHDKNDIKPWLAK
ESTYDELKIGALEIHQILDLVVLCVPVVIYVIFGDNQEVLFAFSSLSLLL
GIIFLFGEQSSFYEDFDRRARAGELVERKDQNQFVALLFMMGVIKDLAIL
LGSLALFQIFGHVWVWATRTYPTLLLCGPSGIRSK*
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Synonyms
Publications