NO04G00320, NO04G00320 (gene) Nannochloropsis oceanica

Overview
NameNO04G00320
Unique NameNO04G00320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1752
Alignment locationchr4:139336..141087 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:139336..141087 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G00320 vs. NCBI_GenBank
Match: EWM28441.1 (hypothetical protein Naga_100495g7 [Nannochloropsis gaditana])

HSP 1 Score: 102.8 bits (255), Expect = 3.600e-18
Identity = 158/289 (54.67%), Postives = 186/289 (64.36%), Query Frame = 0 
Query:  119 QDATHSEDTEVVQI---EEEEELSPEALALFWKDERGLSKERIRYLIRAAEEHPQLRYPRTVLQPSLAALTRALPDVSVNELVSRFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAHFDLSPTAGIKVLSTVPTLLFSSFPPSPSTGSDPRVARGXXXXXXXXXXXXXXXXXXXXXTPLSSCPQSQHYLEVKSLLHAYLPNINQAKLLIASPYLLSLPLESVHSRLQ 405
            QD+T  E  E  +     EEE LSPEAL ++W++E+GLS +R  YL+ AA++HP LRYP TVL+PSLAA  RA PDV+V +L+SRFP                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             AH +LS TA + VL+  P LL             PR   G     XXXXXXXXXXXXXX    +  C  ++H   VK+LL  Y+P  + AKLL+ASP LL LPL ++  RL+
Sbjct:   94 QDSTALEPAEGPETGADYEEEALSPEALRIYWEEEKGLSPKRSHYLVVAAKKHPSLRYPHTVLEPSLAAFGRAFPDVAVPDLMSRFPALLLLSPAQILARLRTLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETLVTDAMALLHAHLNLSSTAAVDVLTEAPALLV------------PREGGG-----XXXXXXXXXXXXXXDMKKVELCWDAEHLQNVKNLLEGYVPGASPAKLLLASPSLLLLPLPTLEGRLR 365
The following BLAST results are available for this feature:
BLAST of NO04G00320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28441.13.600e-1854.67hypothetical protein Naga_100495g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004984NSK004984Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00320.1NO04G00320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100495g7gene2145Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00320.1NO04G00320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00320 ID=NO04G00320|Name=NO04G00320|organism=Nannochloropsis oceanica|type=gene|length=1752bp
ATGTTGAGGATGAGAGCGCCAGCATCAACCCTCGGCTGCTACCTCCTGCT
GCTCGCCCTCCTCATCGTCATCTTGGTCAGCAGCAGCAGCAGCATGGGCA
GTAGAGGAGGGCGAATGAGGGCTTTGTTCTTGCCCTCGCCTCATAACCCC
ACAGCATCAGCATCCCCGGCTTTTTCGAAAAGCTTGCCCTTTTCCTCCTC
CTCCACCCCCTCCTCTTCATCCTCCTTATCAACCCCATGCCCTCCGTCCT
CCAGCGCCTCCGAACCAAGATCCCAAGACATGCACGCCTCGTATAATCGG
AGACCAAGAAGATCACCACCACTCCTAGCCCCTCTCTTTGCCAAGGACGC
ACCACAAGACGCTACCCACTCCGAAGACACAGAAGTCGTCCAAATAGAAG
AGGAAGAGGAGCTATCTCCCGAGGCCCTCGCCCTCTTTTGGAAAGACGAA
AGAGGCCTCTCCAAAGAGCGCATCCGCTATCTCATTCGTGCCGCCGAGGA
GCATCCCCAACTGCGGTACCCGCGCACTGTCCTCCAACCATCCCTCGCCG
CCCTCACCCGCGCCTTGCCTGACGTGTCTGTTAATGAGCTTGTCTCCCGC
TTCCCCCCACTCCTCCTCCTTCCCCCCGCCGAGATAAGCCGCCGCGTGGC
CTTCATCCACAAAACCCTCTACGACCTCCCCCCCCGCTTCCTGGCTACTC
GTGCTGCTCCCCTCCTCTACCTCACCTCACCCGAGGTCCAAGCCCGACTC
ACCACCTGGCAAGCCCTCCTACCCGGCGCAGACGCCGCACGTGTTTGTCG
CAGAGCCATCCCCCTCCTCCTCCAGACCCAGGCCGAAGCCACATCCTCGG
TCACCTCTGCTTTAGGTCTCCTTGAAGCGCACTTTGATCTATCCCCCACG
GCGGGCATCAAGGTCTTGAGCACCGTTCCTACCCTCCTTTTCTCTTCCTT
CCCTCCCTCCCCCTCCACCGGATCGGACCCACGTGTGGCGAGAGGTACGA
CCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCAGCGACATCC
TCTTCCCTAACCCCCCTCTCTTCTTGCCCACAATCCCAGCACTATCTCGA
GGTCAAATCCCTCCTCCACGCCTACCTCCCGAATATCAACCAGGCCAAGC
TCCTTATCGCCTCCCCTTACCTCCTCTCCCTCCCCCTCGAGAGCGTCCAT
TCCCGCCTCCAAACTCTGCTACAAGCTACCCGGAGGATGGAGAAAAGGGC
GGAGGAAGGGAAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGGAGGGACGG
AGGGGGGGAAGGAGGAATTGGCATCTGTAGTGACTTTATGTCCTCGTTTA
TTGAACTCGGACGCCCTGGCCCTCACCCGAGGATTGAGGCTTCTTCGGGA
AGGGTTGGAGGGAGGAGGGGGAGGGAGGGAGGGAGGAAGGGTGAACATGA
CGCAGCTGGCGTGTAAATGTCCGGCGTTGTTGCTCAAGGCCGTGGAGGGG
GTGGACCTCGCGGCCCGGGCACAGGAATGGCAAGCGGCCTTCGGGGAGGG
AGGACAGGAGGCAGGGGGGGAGGGAGGGAGGGAGGGAGGGGGGATCGACA
CGAAGGCCCTGCTCCGCAAACACCCTCTTCTCCTCCTTCCCGATTTCAAT
ACGATCCTCCAACGCTTCACCGCCTTTGAACGCGGCCTCCGAGCACCCTT
CCCTCCCCCTCCCTCCTTCCCTCCCCCTCCCTCCCCCCTCCCTTCCCTCT
AG
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protein sequence of NO04G00320.1

>NO04G00320.1-protein ID=NO04G00320.1-protein|Name=NO04G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=584bp
MLRMRAPASTLGCYLLLLALLIVILVSSSSSMGSRGGRMRALFLPSPHNP
TASASPAFSKSLPFSSSSTPSSSSSLSTPCPPSSSASEPRSQDMHASYNR
RPRRSPPLLAPLFAKDAPQDATHSEDTEVVQIEEEEELSPEALALFWKDE
RGLSKERIRYLIRAAEEHPQLRYPRTVLQPSLAALTRALPDVSVNELVSR
FPPLLLLPPAEISRRVAFIHKTLYDLPPRFLATRAAPLLYLTSPEVQARL
TTWQALLPGADAARVCRRAIPLLLQTQAEATSSVTSALGLLEAHFDLSPT
AGIKVLSTVPTLLFSSFPPSPSTGSDPRVARGTTAAAAAAAAAAAPAATS
SSLTPLSSCPQSQHYLEVKSLLHAYLPNINQAKLLIASPYLLSLPLESVH
SRLQTLLQATRRMEKRAEEGKEEAEEEEEEGGTEGGKEELASVVTLCPRL
LNSDALALTRGLRLLREGLEGGGGGREGGRVNMTQLACKCPALLLKAVEG
VDLAARAQEWQAAFGEGGQEAGGEGGREGGGIDTKALLRKHPLLLLPDFN
TILQRFTAFERGLRAPFPPPPSFPPPPSPLPSL*
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Synonyms
Publications