NO04G00300, NO04G00300 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G00300 vs. NCBI_GenBank
Match: EWM28436.1 (hypothetical protein Naga_100924g3 [Nannochloropsis gaditana]) HSP 1 Score: 304.7 bits (779), Expect = 6.000e-79 Identity = 229/467 (49.04%), Postives = 280/467 (59.96%), Query Frame = 0 Query: 36 LHHVDVEAK--NSRSLPLPLLPLNTPDPTTPSLPLVHADIHSATTSTSNNSREGCDGSRQPPAEPMSP----LRSRGISTSSTLGPSSAPRTWRLYFHNHRRFXXXXXLVTTFLIIGTYAMARYKDEFLQVAQYIQDQAPLSAVYMSLLLVLWIVLCLPATLLEIIAGMIYTWPVAVVSITVGKQIGNNLGFWLGQCITTGSFKEVFLGRLAQRKQEAEARGAAIGESSSETEGMERGEIEGGALEVGADKENEESDIENSRTALQRVTSGSSHNNGSSTSIDSALNLPHTNTTIYTPTAVEPVAEPLPLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTPIEALTWAVKTHPWQICFLLRLLPLPIAVKNYGMSCLPFPLLVYTLCCFVAELPFTILWVHIGQSTRSLLEAMEGRQRGKSH-LLHEILLLVLSVVLLVALGFLMRRYTAKYAKHL 496 LH V++ K LP L + P+ T+ + D T + +NS +R P + + P L ++ S S+T+G S R + NHRRF LV L +G++A+A+YKDE LQ AQYIQD+APLSAVYM+LLL LWI+LCLPATLLE++AGMIYTWPVA VS+TVGKQ+G NLGF +GQCITTGSF++ FL +L + +Q+A AR A+ +SS G GG LE + P N + TP V XXXXXXXXXXXXXXXXXXXXXX TP +AL WAVK HPWQICFLLRLLP+PI KNYGM+CLPFP+L+Y+LC VAE+PFTILW+HIG+S RSLLEAM G GK HEILLLVLS+VLLVALG LMRRYTA+YAK+L Sbjct: 3 LHVVELAPKCQGEDVLPPSLAEASHPESTSATTTTPTDDGTVYTGHSYHNSNGSVPLTRGPTSSLLPPPPLDLETQSCS-STTIGHRSRGAACRDFLINHRRFVFLFFLVVLLLALGSFALAQYKDELLQGAQYIQDRAPLSAVYMALLLALWIILCLPATLLEVVAGMIYTWPVAFVSLTVGKQLGCNLGFSIGQCITTGSFQDNFLSKLTKGEQDAVARARALERASS------AGPRAGGELEXXXXXXXXXXXXXXXXXXXXXXXRQVA---------------PQANGQVPTPHVASMVG--------------GDARPARXXXXXXXXXXXXXXXXXXXXXXXGTPKDALLWAVKKHPWQICFLLRLLPVPIGAKNYGMACLPFPVLIYSLCVLVAEMPFTILWIHIGRSCRSLLEAMNGHGSGKRRSYWHEILLLVLSIVLLVALGVLMRRYTARYAKYL 433
BLAST of NO04G00300 vs. NCBI_GenBank
Match: EWM26339.1 (SNARE associated Golgi protein [Nannochloropsis gaditana]) HSP 1 Score: 156.0 bits (393), Expect = 3.400e-34 Identity = 126/392 (32.14%), Postives = 193/392 (49.23%), Query Frame = 0 Query: 108 STSSTLGPSSAPRTWRLYFHNHRRFXXXXXLVTTFLI---IGTYAMARYKDEFLQVAQYIQDQAPLSAVYMSLLLVLWIVLCLPATLLEIIAGMIYTWPVAVVSITVGKQIGNNLGFWLGQCITTGSFKEVFLGRLAQRKQEAEARGAAIGESS-SETEGMERGEIEGGALEVGADKENEESDIENSRTALQRVTSGSSHNNGSSTSIDSALNLPHTNTTIYTPTAVEPVAEPLPLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTPIEALTWAVKTHPWQICFLLRLLPLPIAVKNYGMSCLPFPLLVYTLCCFVAELPFTILWVHIGQSTRSLLEAMEGRQRG-KSH--LLHEILLLVLSVVLLVALGFLMRRYTAKYA 493 S T PSS R + RR +++ LI G+Y RY+D+ L+ +++I+ AP SAVY +L+ LWI+LCLP+T++E++ G I+++PVA++++TVGKQ+G L F L + + + ++ A+G SS S T G KE ES +EN + G + S L H+ P A P ++P+ + I A+ A++ HPW+I FLLR LP+PI++KNYGM+ LP P V+ LC FVA +PFT++WV++G+ST++LLEA+ G K H E+ LLV+ + LL+ L F++RRYT +YA Sbjct: 143 SVGPTALPSSRQGFCRRAYKTLRRLRSMLLVLSVVLICAVAGSYLCVRYRDQVLEGSEWIRAHAPQSAVYYALITALWIILCLPSTIIELLGGAIFSYPVALLTLTVGKQLGCMLAFLLAKVFASPTLRD------------------ALGHSSHSPTRG----------------KEPNESVVEN-----------NDQEGGDAPS------LRHSR----FPAAARP-SKPM--------------------------------------SKRKRTIRAMFIAMECHPWKITFLLRFLPIPISIKNYGMAFLPCPTHVFFLCTFVASIPFTLIWVNLGESTKNLLEALNGGGAAMKRHGIFAQELGLLVVGLALLMVLIFILRRYTQRYA 440
BLAST of NO04G00300 vs. NCBI_GenBank
Match: EWM20987.1 (SNARE associated Golgi protein [Nannochloropsis gaditana]) HSP 1 Score: 91.3 bits (225), Expect = 1.000e-14 Identity = 84/318 (26.42%), Postives = 122/318 (38.36%), Query Frame = 0 Query: 138 LVTTFLIIGTYAMARYKDEFLQVAQYIQDQAPLSAVYMSLLLVLWIVLCLPATLLEIIAGMIYTWPVAVVSITVGKQIGNNLGFWLGQCITTGSFKEVFLGRLAQRKQEAEARGAAIGESSSETEGMERGEIEGGALEVGADKENEESDIENSRTALQRVTSGSSHNNGSSTSIDSALNLPHTNTTIYTPTAVEPVAEPLPLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTPIEALTWAVKTHPWQICFLLRLLPLPIAVKNYGMSCLPFPLLVYTLCCFVAELPFTILWVHIGQSTRSLLEAMEG 456 +V+ L+ G +A + + ++Q +APLSA+Y + VLW++LCLP+TL+E+ G I+ PV ++++ V K G L F LG+C+ S ++ L + PV XXXXXXXXX AL A++ HPW++ LLR + LPIAVKNYGM+ LP P V+ LC A LP+T+LW H G S+RSL + + G Sbjct: 97 VVSLLLVTGGTLLALFHSRLTDLMAWVQARAPLSALYYAAFTVLWVLLCLPSTLIELCGGFIFGLPVTLLTVGVAKPFGCCLAFLLGRCVAADSLRQGLL--------------------------------------------------------------------------------------------LPPV----------------------------------RXXXXXXXXXXXXXXRALFLAMERHPWKVTLLLRFMYLPIAVKNYGMAALPCPFPVFALCTLAASLPYTLLWAHAGASSRSLYDVLGG 288 The following BLAST results are available for this feature:
BLAST of NO04G00300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G00300 ID=NO04G00300|Name=NO04G00300|organism=Nannochloropsis oceanica|type=gene|length=2600bpback to top protein sequence of NO04G00300.1 >NO04G00300.1-protein ID=NO04G00300.1-protein|Name=NO04G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bpback to top Synonyms
Publications
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