NO04G00270, NO04G00270 (gene) Nannochloropsis oceanica

Overview
NameNO04G00270
Unique NameNO04G00270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1372
Alignment locationchr4:119557..120928 +

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Properties
Property NameValue
DescriptionPeptidyl-prolyl cis-trans isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:119557..120928 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0000413protein peptidyl-prolyl isomerization
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR029000Cyclophilin-like_dom
IPR024936Cyclophilin-type_PPIase
IPR002130Cyclophilin-type_PPIase_dom
Homology
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: XP_009532652.1 (hypothetical protein PHYSODRAFT_355199 [Phytophthora sojae] >EGZ12319.1 hypothetical protein PHYSODRAFT_355199 [Phytophthora sojae])

HSP 1 Score: 257.7 bits (657), Expect = 2.500e-65
Identity = 114/155 (73.55%), Postives = 136/155 (87.74%), Query Frame = 0 
Query:    4 THVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATPLT 159
            THV FET+VG+FT+ELY +HAPRTC N AELAR GYYN TIFHRIIKDFMIQ GDPTGTGRGGESIYG KF+DEIT++LKHTGAG+LSMAN+GPNTNGSQFF+TLAPTPWLDGKHT+FGR+S GM ++Q++G+V  G  DRP  ++ V +A P++
Sbjct:   11 THVVFETTVGDFTMELYTEHAPRTCWNIAELARRGYYNNTIFHRIIKDFMIQAGDPTGTGRGGESIYGAKFDDEITKELKHTGAGVLSMANSGPNTNGSQFFITLAPTPWLDGKHTVFGRISSGMKVIQRMGMVPTGANDRPREEIHVKRAYPVS 165
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: XP_008861476.1 (peptidyl-prolyl cis-trans isomerase-like 1 [Aphanomyces invadans] >ETW10065.1 peptidyl-prolyl cis-trans isomerase-like 1 [Aphanomyces invadans])

HSP 1 Score: 257.7 bits (657), Expect = 2.500e-65
Identity = 116/152 (76.32%), Postives = 133/152 (87.50%), Query Frame = 0 
Query:    5 HVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATP 157
            +V FETS+G FT+ELY QHAPRTC N  ELAR GYY+ TIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEIT  LKHTGAG+LSMANAGPNTNGSQFF+TLAPTPWLDGKH+IFGR+S GM +V+++GLV+ G  D+P  D+R+ +A P
Sbjct:    4 YVDFETSMGTFTMELYMQHAPRTCKNIIELARRGYYDNTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITPQLKHTGAGVLSMANAGPNTNGSQFFITLAPTPWLDGKHSIFGRISEGMGVVKRIGLVQTGANDKPHDDIRILRALP 155
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: XP_002177617.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50431.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 257.7 bits (657), Expect = 2.500e-65
Identity = 115/165 (69.70%), Postives = 138/165 (83.64%), Query Frame = 0 
Query:    3 WTHVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATPLTGPPVDTTVR 168
            WTHV FETS+G+F++ELY++H PRTC+N A LA  GYYNGTIFHRII+DFMIQGGDPTGTGRGGESIYGGKF DEITR+LKH GAG++SMANAGPNTNGSQFF++L PTP+LDGKHT+ GRV  GM +VQ++G+V     DRPL  V ++ ATPL  PP+  + R
Sbjct:    8 WTHVEFETSIGSFSIELYHKHTPRTCYNIAALAYQGYYNGTIFHRIIRDFMIQGGDPTGTGRGGESIYGGKFADEITRNLKHVGAGVVSMANAGPNTNGSQFFISLKPTPFLDGKHTVLGRVYSGMSVVQRMGMVATDGEDRPLHPVTIYTATPLREPPLPKSER 172
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: XP_002998118.1 (peptidyl-prolyl cis-trans isomerase ppi1 [Phytophthora infestans T30-4] >EEY70464.1 peptidyl-prolyl cis-trans isomerase ppi1 [Phytophthora infestans T30-4])

HSP 1 Score: 257.7 bits (657), Expect = 2.500e-65
Identity = 113/155 (72.90%), Postives = 135/155 (87.10%), Query Frame = 0 
Query:    4 THVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATPLT 159
            THV FET+VG FT+ELY +HAPRTC N AELAR GYYN TIFHRIIKDFMIQGGDPTGTGRGGESIYG KF+DEI ++LKHTGAG+LSMAN+GPNTNGSQFF+TLAPTPWLDGKHT+FGR+S GM ++Q++G+V  G  DRP  ++ + +A P++
Sbjct:   11 THVVFETTVGEFTMELYTEHAPRTCWNIAELARRGYYNNTIFHRIIKDFMIQGGDPTGTGRGGESIYGAKFDDEINKELKHTGAGVLSMANSGPNTNGSQFFITLAPTPWLDGKHTVFGRISSGMKVIQRMGMVPTGANDRPREEIHIKRAYPMS 165
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: XP_024575940.1 (peptidyl-prolyl cis-trans isomerase-like 1 [Plasmopara halstedii] >CEG39571.1 peptidyl-prolyl cis-trans isomerase-like 1 [Plasmopara halstedii])

HSP 1 Score: 257.3 bits (656), Expect = 3.300e-65
Identity = 114/153 (74.51%), Postives = 135/153 (88.24%), Query Frame = 0 
Query:    4 THVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATP 157
            THV FET+VG+FT+ELY +HAPRTC N AELAR GYYN TIFHRIIK+FMIQGGDPTGTGRGGES+YG KF+DEIT++LKHTGAG+LSMAN+GPNTNGSQFF+TLAPTPWLDGKHTIFGR+S GM ++Q++GLV  G  DRP  ++ + +A P
Sbjct:   11 THVVFETTVGDFTMELYTEHAPRTCWNIAELARRGYYNNTIFHRIIKNFMIQGGDPTGTGRGGESVYGAKFDDEITKELKHTGAGVLSMANSGPNTNGSQFFITLAPTPWLDGKHTIFGRISSGMKVIQRMGLVPTGVNDRPREEIHIKRAYP 163
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: POM65880.1 (Peptidyl-prolyl cis-trans isomerase ppi1 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 257.3 bits (656), Expect = 3.300e-65
Identity = 113/155 (72.90%), Postives = 135/155 (87.10%), Query Frame = 0 
Query:    4 THVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATPLT 159
            THV FET+VG FT+ELY +HAPRTC N AEL+R GYYN TIFHRIIKDFMIQGGDPTGTGRGGESIYG KF+DEIT++LKHTGAG+LSMAN+GPNTNGSQFF+ LAPTPWLDGKHT+FGR+S GM ++Q++GLV  G  DRP  ++ + +A P++
Sbjct:   11 THVVFETTVGEFTMELYTEHAPRTCWNIAELSRRGYYNNTIFHRIIKDFMIQGGDPTGTGRGGESIYGAKFDDEITKELKHTGAGVLSMANSGPNTNGSQFFIALAPTPWLDGKHTVFGRISSGMKVIQRMGLVPTGANDRPREEIHIKRAYPIS 165
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: XP_009822422.1 (hypothetical protein, variant 5 [Aphanomyces astaci] >ETV87560.1 hypothetical protein, variant 5 [Aphanomyces astaci])

HSP 1 Score: 256.9 bits (655), Expect = 4.300e-65
Identity = 114/153 (74.51%), Postives = 135/153 (88.24%), Query Frame = 0 
Query:    4 THVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATP 157
            ++V FETS+G FT+ELY QHAPRTC N  ELAR GYY+ TIFHRIIK+FMIQGGDPTGTGRGGESIYGGKFEDEI+  LKHTGAG+LSMANAGPNTNGSQFF+TLAPTPWLDGKHTIFGR+S GM +++++GLV+ G  D+P  D+R+ +A+P
Sbjct:    3 SYVDFETSMGTFTMELYVQHAPRTCKNIIELARRGYYDNTIFHRIIKEFMIQGGDPTGTGRGGESIYGGKFEDEISPQLKHTGAGVLSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRISEGMGVIKRIGLVQTGANDKPHDDIRILRASP 155
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: CCA24450.1 (peptidylprolyl cistrans isomerase ppi1 putative [Albugo laibachii Nc14])

HSP 1 Score: 255.8 bits (652), Expect = 9.600e-65
Identity = 116/155 (74.84%), Postives = 132/155 (85.16%), Query Frame = 0 
Query:    4 THVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATPLT 159
            THV  ETS+G+FT+ELYYQHAP+ CHNF++LA  GYYN TIFHRIIKDFMIQGGDPTGTGRGGESIYGG FEDEI   LKHTGAGI+SMANAG NTNGSQFF+TLAPTPWLDGKHTIFGRVS G+ ++Q++GLV  G  D P   +R+ KA P+T
Sbjct:  292 THVTVETSIGSFTIELYYQHAPKACHNFSQLAHNGYYNSTIFHRIIKDFMIQGGDPTGTGRGGESIYGGHFEDEIDSTLKHTGAGIVSMANAGKNTNGSQFFVTLAPTPWLDGKHTIFGRVSDGIQVIQRVGLVPTGPNDCPREAIRIVKAFPVT 446
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: CCA25117.1 (peptidylprolyl cistrans isomerase ppi1 putative [Albugo laibachii Nc14])

HSP 1 Score: 255.8 bits (652), Expect = 9.600e-65
Identity = 116/155 (74.84%), Postives = 132/155 (85.16%), Query Frame = 0 
Query:    4 THVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATPLT 159
            THV  ETS+G+FT+ELYYQHAP+ CHNF++LA  GYYN TIFHRIIKDFMIQGGDPTGTGRGGESIYGG FEDEI   LKHTGAGI+SMANAG NTNGSQFF+TLAPTPWLDGKHTIFGRVS G+ ++Q++GLV  G  D P   +R+ KA P+T
Sbjct:   93 THVTVETSIGSFTIELYYQHAPKACHNFSQLAHNGYYNSTIFHRIIKDFMIQGGDPTGTGRGGESIYGGHFEDEIDSTLKHTGAGIVSMANAGKNTNGSQFFVTLAPTPWLDGKHTIFGRVSDGIQVIQRVGLVPTGPNDCPREAIRIVKAFPVT 247
[Close]
BLAST of NO04G00270 vs. NCBI_GenBank
Match: XP_002947887.1 (hypothetical protein VOLCADRAFT_79909 [Volvox carteri f. nagariensis] >EFJ50875.1 hypothetical protein VOLCADRAFT_79909 [Volvox carteri f. nagariensis])

HSP 1 Score: 254.2 bits (648), Expect = 2.800e-64
Identity = 111/152 (73.03%), Postives = 139/152 (91.45%), Query Frame = 0 
Query:    6 VRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTNGSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVRVFKATPL 158
            ++ +T++G+FT+ELYY+HAPRTC NF EL++ GYY+GTIFHRII+DFM QGGDPTGTGRGGESIYGGKF+DEITR+LKHTGAGILSMANAGPNTNGSQFF+TLAPTPWLDGKHTIFGRV+ GM I+++LG ++  + DRP+T+V++ +A P+
Sbjct:    6 IQIDTTLGSFTVELYYKHAPRTCKNFEELSKRGYYDGTIFHRIIRDFMCQGGDPTGTGRGGESIYGGKFDDEITRELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVATGMGIIKRLGNLQTDNMDRPITEVKIVRARPV 157
The following BLAST results are available for this feature:
BLAST of NO04G00270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009532652.12.500e-6573.55hypothetical protein PHYSODRAFT_355199 [Phytophtho... [more]
XP_008861476.12.500e-6576.32peptidyl-prolyl cis-trans isomerase-like 1 [Aphano... [more]
XP_002177617.12.500e-6569.70predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002998118.12.500e-6572.90peptidyl-prolyl cis-trans isomerase ppi1 [Phytopht... [more]
XP_024575940.13.300e-6574.51peptidyl-prolyl cis-trans isomerase-like 1 [Plasmo... [more]
POM65880.13.300e-6572.90Peptidyl-prolyl cis-trans isomerase ppi1 [Phytopht... [more]
XP_009822422.14.300e-6574.51hypothetical protein, variant 5 [Aphanomyces astac... [more]
CCA24450.19.600e-6574.84peptidylprolyl cistrans isomerase ppi1 putative [A... [more]
CCA25117.19.600e-6574.84peptidylprolyl cistrans isomerase ppi1 putative [A... [more]
XP_002947887.12.800e-6473.03hypothetical protein VOLCADRAFT_79909 [Volvox cart... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004978NSK004978Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00270.1NO04G00270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577991gene_1808Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100388g1gene2152Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00270.1NO04G00270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00270 ID=NO04G00270|Name=NO04G00270|organism=Nannochloropsis oceanica|type=gene|length=1372bp
ACAGGACAACTGGAAGGAGATAAAAGTCATGTCCTGGACACACGTGCGGT
TTGAGACCTCTGTGgtacgtagcgagcgggagtgttgggaggggtacagg
gaggggcgaagggggtggggaggcggagttggggatcatggtgattgttg
gcggatgccaggtctccttacaatatactgcaacaacacagGGCAATTTC
ACGCTGGAGCTCTACTATCAACATGCCCCACGAACATGCCACAACTTTGC
TGgtacgtattttggttggccccctctcttgctgtctcgtattccaccca
gtcatcctgcctccctctcctttcccccatcccacaactgcagAGCTCGC
CCGTGCCGGCTATTACAACGGCACAATTTTCCACCGCATCATCAAGgtag
gcgggaggaggggactgtccgtttagcttgttatgggcaaggaaactcgg
acatgccaggctatgcccatgtcctacataccaccctccaccctgctatc
ccctatccctgcagGATTTTATGATCCAGGGTGGAGATCCCACAGGCACA
GGGCGTGGAGGAGAATCGATTTACGGgtaagtgctctgggtcatgaaaaa
atccgagaacaagggaaatgcgagaacaagaggaaaataagaagcaagca
gcagcacatcagtcgattcacacatccacccatacgctcagAGGCAAGTT
TGAGGACGAAATAACACGGGACCTAAAGCACACGGGTGCCGGTATCCTTT
CCATGgtacgtacatatctatggcccgagttttccatggcccgagttttt
caccgtcctccgtccgattctaatcctccgtccctccctccccctacttg
acagGCCAACGCCGGTCCCAACACAAACGGCAGTCAGTTCTTCCTCACCC
TCGCCCCCACGCCCTGGCTGGACGGAAAACACACCATCTTTGGGCGTGTG
TCGCACGGCATGCCGATCGTGCAGAAGCTGGGCTTGGTGAAAGTCGGCGA
CGGCGACCGgtgagaaggaggggagtgcagagggatgaggagagggaagt
gagggagggaggaaggggacggaggggaggaaggagttgagggaatattg
ctgtatgttataattcgtatgaagcttgtatgaatggtcttcttttatat
tacttacacacacatcttctcaatacagGCCATTGACCGACGTGCGGGTA
TTCAAGGCGACGCCACTGACGGGGCCGCCCGTTGACACCACAGTACGATA
ATTATCAAGTCGAGACTCAAGGAAGGCAGCGAGAAAGACAGAAATCTGTC
GAATGGCCGGATCAACTCTACTCCACGTCATACAAACCAAAACCAAAGTA
AACGATGAGATGAAGAGAAAAT
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protein sequence of NO04G00270.1

>NO04G00270.1-protein ID=NO04G00270.1-protein|Name=NO04G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MSWTHVRFETSVGNFTLELYYQHAPRTCHNFAELARAGYYNGTIFHRIIK
DFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANAGPNTN
GSQFFLTLAPTPWLDGKHTIFGRVSHGMPIVQKLGLVKVGDGDRPLTDVR
VFKATPLTGPPVDTTVR*
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Synonyms
Publications