NO04G00260, NO04G00260 (gene) Nannochloropsis oceanica

Overview
NameNO04G00260
Unique NameNO04G00260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2387
Alignment locationchr4:116765..119151 -

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Properties
Property NameValue
DescriptionYippee-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:116765..119151 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR034751Yippee
IPR004910Yippee/Mis18
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: XP_021603571.1 (protein yippee-like At4g27745 [Manihot esculenta] >XP_021603572.1 protein yippee-like At4g27745 [Manihot esculenta] >OAY56291.1 hypothetical protein MANES_02G004200 [Manihot esculenta])

HSP 1 Score: 107.1 bits (266), Expect = 8.800e-20
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRREREGGRKGSGREEWKEG 267
            M  L GP +YSCC CR H+A   +V+S+AF GR GRAFL    +NI  GP E R LMTGLH+V+D+ C  CH VLGW+Y R   E        +++KEG
Sbjct:    1 MAELIGPRLYSCCNCRNHVALHDDVISKAFQGRHGRAFLFSHAMNIMVGPKEDRQLMTGLHTVADVYCCDCHEVLGWKYERAYEE-------TQKYKEG 92
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: GAX25485.1 (hypothetical protein FisN_12Lh024 [Fistulifera solaris])

HSP 1 Score: 107.1 bits (266), Expect = 8.800e-20
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRREREGGRKGSGR 261
            MV+L+GPS+Y+C  C THL++  +++S++FHGR GRAFLL+  VN++ GP+E R L+TGLHSV DL C  C T++GW Y +      +   G+
Sbjct:  137 MVYLEGPSIYACSECGTHLSSHDDIISKSFHGRHGRAFLLENCVNVNIGPAEDRHLLTGLHSVCDLFCKRCDTLVGWTYKKAYERSQKYKEGK 229
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: GAX20179.1 (hypothetical protein FisN_12Hh024 [Fistulifera solaris])

HSP 1 Score: 107.1 bits (266), Expect = 8.800e-20
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRREREGGRKGSGR 261
            MV+L+GPS+Y+C  C THL++  +++S++FHGR GRAFLL+  VN++ GP+E R L+TGLHSV DL C  C T++GW Y +      +   G+
Sbjct:  137 MVYLEGPSIYACSECGTHLSSHDDIISKSFHGRHGRAFLLENCVNVNIGPAEDRHLLTGLHSVCDLFCKRCDTLVGWTYKKAYERSQKYKEGK 229
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: XP_021686885.1 (protein yippee-like At4g27745 [Hevea brasiliensis])

HSP 1 Score: 107.1 bits (266), Expect = 8.800e-20
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRREREGGRKGSGR 261
            M  L GP +YSCC CR H+A   +V+S+AF G  GRAFL    +NI  GP E R LMTGLH+V+D+ C  CH VLGW+Y R   EG +   G+
Sbjct:    1 MAELIGPRLYSCCNCRNHVALHDDVISKAFQGIHGRAFLFSHTMNIVVGPKEDRQLMTGLHTVADVYCCDCHEVLGWKYERAYEEGQKYKEGK 93
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: POF10798.1 (protein yippee-like [Quercus suber])

HSP 1 Score: 107.1 bits (266), Expect = 8.800e-20
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVR 249
            M  L GP +YSCC CR H++   +++S+AF GR GRAFL    +NI  GP E R LMTGLH+V+D+ CA CH VLGW+Y R
Sbjct:  112 MAELIGPRLYSCCNCRNHVSLHDDIISKAFQGRNGRAFLFSHAMNIVIGPKEDRHLMTGLHTVADIYCADCHEVLGWKYER 192
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: POF10797.1 (protein yippee-like [Quercus suber])

HSP 1 Score: 107.1 bits (266), Expect = 8.800e-20
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVR 249
            M  L GP +YSCC CR H++   +++S+AF GR GRAFL    +NI  GP E R LMTGLH+V+D+ CA CH VLGW+Y R
Sbjct:  156 MAELIGPRLYSCCNCRNHVSLHDDIISKAFQGRNGRAFLFSHAMNIVIGPKEDRHLMTGLHTVADIYCADCHEVLGWKYER 236
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: XP_023912069.1 (protein yippee-like At4g27745 [Quercus suber] >XP_023912070.1 protein yippee-like At4g27745 [Quercus suber])

HSP 1 Score: 107.1 bits (266), Expect = 8.800e-20
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVR 249
            M  L GP +YSCC CR H++   +++S+AF GR GRAFL    +NI  GP E R LMTGLH+V+D+ CA CH VLGW+Y R
Sbjct:    1 MAELIGPRLYSCCNCRNHVSLHDDIISKAFQGRNGRAFLFSHAMNIVIGPKEDRHLMTGLHTVADIYCADCHEVLGWKYER 81
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: XP_006662984.1 (PREDICTED: protein yippee-like At4g27745 [Oryza brachyantha] >XP_015617846.1 PREDICTED: protein yippee-like At4g27745 [Oryza sativa Japonica Group] >ABA94243.2 Yippee-like protein At4g27740, putative, expressed [Oryza sativa Japonica Group] >BAF28443.1 Os11g0551800 [Oryza sativa Japonica Group] >BAG88122.1 unnamed protein product [Oryza sativa Japonica Group] >BAG90157.1 unnamed protein product [Oryza sativa Japonica Group] >EEC68343.1 hypothetical protein OsI_36462 [Oryza sativa Indica Group] >EEE52271.1 hypothetical protein OsJ_34236 [Oryza sativa Japonica Group] >BAT14427.1 Os11g0551800 [Oryza sativa Japonica Group])

HSP 1 Score: 106.7 bits (265), Expect = 1.100e-19
Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRREREGGRKGSGR 261
            M  L GP VYSCC CR H+    +++S+AF GR GRAFL    +NIS GP E R LMTGLH+V+D+ C  C  VLGW+Y R   E  +   G+
Sbjct:    1 MAELVGPRVYSCCHCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNISMGPKEDRQLMTGLHTVADIYCRDCREVLGWKYERAFEESQKYKEGK 93
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: XP_021316371.1 (protein yippee-like At4g27745 isoform X3 [Sorghum bicolor] >XP_021316372.1 protein yippee-like At4g27745 isoform X3 [Sorghum bicolor] >EES09932.1 hypothetical protein SORBI_3005G150800 [Sorghum bicolor])

HSP 1 Score: 106.7 bits (265), Expect = 1.100e-19
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRREREGGRKGSGR 261
            MV L GP VYSCC CR H+    +++S+AF GR GRAFL    +NI+ GP E R LMTGLH+V+D+ C  C  VLGW+Y R   E  R   G+
Sbjct:    1 MVDLVGPRVYSCCHCRNHVCLHDDIISKAFQGRYGRAFLYSHAMNIAVGPKEDRQLMTGLHTVADIYCRDCREVLGWKYERAYEESQRYKEGK 93
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: KCW72565.1 (hypothetical protein EUGRSUZ_E01033, partial [Eucalyptus grandis])

HSP 1 Score: 106.7 bits (265), Expect = 1.100e-19
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRREREGGRKGSGREEWKEG 267
            M  + GP +YSCC CR H+A   +V+S++F GR GRAFL  + +NI  GP E R LMTGLH+V+D+ C+ CH +LGW+Y R   E        +++KEG
Sbjct:  117 MAKVIGPRLYSCCHCRNHVALHDDVISKSFQGRHGRAFLFSRAMNIKVGPKEDRQLMTGLHTVADVHCSDCHEILGWKYERAYEE-------TQKYKEG 208
The following BLAST results are available for this feature:
BLAST of NO04G00260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_021603571.18.800e-2050.51protein yippee-like At4g27745 [Manihot esculenta] ... [more]
GAX25485.18.800e-2048.39hypothetical protein FisN_12Lh024 [Fistulifera sol... [more]
GAX20179.18.800e-2048.39hypothetical protein FisN_12Hh024 [Fistulifera sol... [more]
XP_021686885.18.800e-2051.61protein yippee-like At4g27745 [Hevea brasiliensis][more]
POF10798.18.800e-2055.56protein yippee-like [Quercus suber][more]
POF10797.18.800e-2055.56protein yippee-like [Quercus suber][more]
XP_023912069.18.800e-2055.56protein yippee-like At4g27745 [Quercus suber] >XP_... [more]
XP_006662984.11.100e-1950.54PREDICTED: protein yippee-like At4g27745 [Oryza br... [more]
XP_021316371.11.100e-1951.61protein yippee-like At4g27745 isoform X3 [Sorghum ... [more]
KCW72565.11.100e-1947.47hypothetical protein EUGRSUZ_E01033, partial [Euca... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00260.2NO04G00260.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G00260.1NO04G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577987gene_1807Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100388g2gene2153Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00260.2NO04G00260.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G00260.1NO04G00260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00260 ID=NO04G00260|Name=NO04G00260|organism=Nannochloropsis oceanica|type=gene|length=2387bp
ACTGTAGCGGGAGTGTCGCTGTTACAACAAGCGCCGCATAAGAAGTGGGA
GACGCAAAAGAGCTGAGATATGGCCACGACGGTGATGCCTTCAACGCCTT
TCTTCGTTCACCCTCCTGCTCATCCTCCTGTGCAGAGCCACCAGGAGGGC
GATAGCGATAGCGACGAAGAGGTTGAGCACTTGCAGGAGGAGGAGGAAAA
TGATGAGGAAGAGGGAGAGGGCCCGGTGGTACCTTGGTGGGCGCAGCAGC
TCCCGCAAGCTCCCGCGGAAGAAGGTGGGAGGTCAGATCAGCAGCAGCAC
CAACAGCAACAGCAGCAGCAACGGCAGCACGAAAGTGGTCGTTGCGAGGG
GTCCGTGACATACCTTCTCCGTCAGCTCTTTTTCCCGCTCCTGAGGCCTC
TGTCCGCGGCATTAAAAAAGGCGCAAGGGCATGCAGTAGGGCAACAGCAC
CAACAGCAGCAGCAGCAGCAGCACCCCCATCACCATGGAGAACGGTCGGA
AGATGGATCGTATACGAGACAAGAGCAGCAACAGAAAAAGAAGAACAAGA
AGGACGAGGACGAGGGTAGGATGGTGCACCTGGACGGGCCTTCGGTTTAT
TCCTGTTGCATGTGTCGCACGCATTTGGCCACGGATATGGAGGTGGTTTC
AAGGgtgaggaagacgggagggtggcaaggcggcggggggggagggaggg
gggatagtcgaaggggatgaaggggaatgttgggaacactagatgcatgt
atcacacacagacataactcgtcccctctcccgccttaacacctcacaca
tacatatatagGCCTTCCACGGACGGGGTGGACGTGCCTTTCTCCTCGAC
AAAGTgtgagtacctcctcatccctccctccctctctttccctcccaccc
atttttccctttcgcccgccaactacttatgctcgacggccttgcgattc
cctccctccctccctccctctctcccttcctccccttcctcacccagCGT
CAACATATCACCTGGTCCCTCGGAGCAGCGCATGCTTATGACGGGCCTCC
ACTCCGTGTCCGATTTGAGGTGTGCCACATGTCACACAGTGCTGGGGTGG
CAATATgtacgtagggagagggagggagggaggaaggggtcagggaggga
ggaatggaaagaaggatgaaagacggagaacaagggaatctcgacgaatg
ggagaaagggagggagagagagagggaacggcatcggactcacgtcgtat
tgttttcattacgcatgcatgcagGACAAGGCATTTGAGCCCAGTCAGAA
GTACAAGGAGGGGAAATTCGTCCTGGAGATGGTGCACGTGCGCTTGGAGG
AGGAAGAGGAGGAAGAGGAGGCGGAATGGTGAAAGAGGGAGGGAGGGAGA
AGGGGAGGGAGAGTGTGAATACGAAGGAGATGTGAGTAGATATCAAGGAG
GTGTGAAGCAAGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAG
GGAGGGATAGTGGCGGTGTACAGATAGACGTCATTTATGGGTTCAAACAA
TAGAAAGAAAATGTAGAGAGTGCACGAGAAAAAGGAGAAGAAGCGTAAGA
AAGAGAGCAGAGAAGGAGGGGACAATTAAGAGAGGGGAAGAAGAAGACGA
AAAAGACGAAGAACAAGAAGAAGAAGGAGGAGTAGAAGAAGACAAAGAGA
GAGCGAAAGAGAGAGAGAGAGGATGATGGATATAGCTAGGGGAGAAGACG
GTTTGCCATCACGCCACTGACAAACACTCATGGTTCGGTGAAAAACAACA
AGGAGAGATAGAAATTGACGGCGATGTAGCAGAAGAAGGAAGGAAGCAAG
TGTGTGTATATATGTGAGGGTCATCTCGGCGGGAGTCCATGCGAGATCGT
GCAAATGTCCGAGGAAATCGACAAAGGACAAAGAGGGGCTTGGAGCGAAG
GAGGAGGGAGAGTAATATCAGCAGGTCTCATGTCGTGTGAGGTTTCCCAC
CCTCTGTTTGCATTATCGTCGCTCTGCCTGTCGTTGCGGTTGTTGTTGTC
GTCGGGGTGATGAAAAAGAGCGAGAGAGAACGCGCATGAGCGTTGATGAA
ATAGTGTTGATGTATTTCATAGTGTGGATGTAATGCGCCCATGCCCCGTG
TAGAGAGGAAGGATAAGAAGAACAGGAAGAAGACGACGACGACGACGAAG
AAACAGACGAATGAGAAGATGAAGACGACGACGACGAAGAAGAATAAGTA
GAAGAAGAAGACGAAGAAAAGAATAGAGGAAGGAAACGGGGAGTGGGATG
ATTGAGCAGAGGAAGAGAAGAAATCCCGCCTTGATACAAATCCCTAAAAC
CAAAACACACAAAAGATGGAACGAATCAAAACAGCCT
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protein sequence of NO04G00260.2

>NO04G00260.2-protein ID=NO04G00260.2-protein|Name=NO04G00260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MATTVMPSTPFFVHPPAHPPVQSHQEGDSDSDEEVEHLQEEEENDEEEGE
GPVVPWWAQQLPQAPAEEGGRSDQQQHQQQQQQQRQHESGRCEGSVTYLL
RQLFFPLLRPLSAALKKAQGHAVGQQHQQQQQQQHPHHHGERSEDGSYTR
QEQQQKKKNKKDEDEGRMVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGR
GGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRRE
REGGRKGSGREEWKEG*
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protein sequence of NO04G00260.1

>NO04G00260.1-protein ID=NO04G00260.1-protein|Name=NO04G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MATTVMPSTPFFVHPPAHPPVQSHQEGDSDSDEEVEHLQEEEENDEEEGE
GPVVPWWAQQLPQAPAEEGGRSDQQQHQQQQQQQRQHESGRCEGSVTYLL
RQLFFPLLRPLSAALKKAQGHAVGQQHQQQQQQQHPHHHGERSEDGSYTR
QEQQQKKKNKKDEDEGRMVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGR
GGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYDKAF
EPSQKYKEGKFVLEMVHVRLEEEEEEEEAEW*
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Synonyms
Publications