NO04G00210, NO04G00210 (gene) Nannochloropsis oceanica

Overview
NameNO04G00210
Unique NameNO04G00210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length435
Alignment locationchr4:83821..84255 -

Link to JBrowse

Properties
Property NameValue
DescriptionMak10 subunit, NatC N(Alpha)-terminal acetyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:83821..84255 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0031417NatC complex
Vocabulary: Biological Process
TermDefinition
GO:0017196N-terminal peptidyl-methionine acetylation
Homology
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BLAST of NO04G00210 vs. NCBI_GenBank
Match: XP_005854064.1 (hypothetical protein NGA_0426800 [Nannochloropsis gaditana CCMP526] >EKU22294.1 hypothetical protein NGA_0426800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 100.5 bits (249), Expect = 4.400e-18
Identity = 68/163 (41.72%), Postives = 88/163 (53.99%), Query Frame = 0 
Query:    1 MLTYTDFQDNHQCWEEXXXXXXXMEGRKECGEAEEGGREEARGQVLEDAKGCFKAVKTLVDHGMRIKSHLKDEQGKAGLRDLARVAVSNSVVLMQAERALMVGETEG-------------------EGGKEARRKSRKMKRAKVSLTFAAHRQFPVLSVTVPE 145
            ++TY DFQ  H             + R+E G+ E        G  L +AK CFKAVKTLV+HG+RIKSHL+DE+GK  L++LAR A+SNSV L+QAE +L  G  +G                     G E +   R  K A+V+L+F AH Q PVL V V E
Sbjct:  524 LMTYDDFQAVH-------------DKRREEGDEE--------GASLTNAKECFKAVKTLVEHGVRIKSHLQDEEGKVNLKNLARAAISNSVALVQAEASLREGGEKGGNRIGKEDSRNGLKKEEIRGAGVEGKEIERPRKHAEVTLSFVAHPQVPVLVVKVME 665
[Close]
BLAST of NO04G00210 vs. NCBI_GenBank
Match: EWM28426.1 (Mak10 subunit, NatC N(alpha)-terminal acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 100.5 bits (249), Expect = 4.400e-18
Identity = 68/163 (41.72%), Postives = 88/163 (53.99%), Query Frame = 0 
Query:    1 MLTYTDFQDNHQCWEEXXXXXXXMEGRKECGEAEEGGREEARGQVLEDAKGCFKAVKTLVDHGMRIKSHLKDEQGKAGLRDLARVAVSNSVVLMQAERALMVGETEG-------------------EGGKEARRKSRKMKRAKVSLTFAAHRQFPVLSVTVPE 145
            ++TY DFQ  H             + R+E G+ E        G  L +AK CFKAVKTLV+HG+RIKSHL+DE+GK  L++LAR A+SNSV L+QAE +L  G  +G                     G E +   R  K A+V+L+F AH Q PVL V V E
Sbjct:  729 LMTYDDFQAVH-------------DQRREEGDEE--------GASLTNAKECFKAVKTLVEHGVRIKSHLQDEEGKVNLKNLARAAISNSVALVQAEASLREGGEKGGNRIGKEDSRNGLKKEEIRGAGVEGKEIERPRKHAEVTLSFVAHPQVPVLVVKVME 870
The following BLAST results are available for this feature:
BLAST of NO04G00210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854064.14.400e-1841.72hypothetical protein NGA_0426800 [Nannochloropsis ... [more]
EWM28426.14.400e-1841.72Mak10 subunit, NatC N(alpha)-terminal acetyltransf... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004971NSK004971Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00210.1NO04G00210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100166g2gene2157Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00210.1NO04G00210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00210 ID=NO04G00210|Name=NO04G00210|organism=Nannochloropsis oceanica|type=gene|length=435bp
ATGTTGACTTATACAGACTTCCAGGATAATCACCAATGCTGGGAGGAGGA
GGAGGAGGAAGAGGAAGGGATGGAAGGGAGAAAGGAATGTGGAGAGGCGG
AGGAGGGAGGGAGGGAGGAGGCGAGAGGGCAGGTGTTGGAAGATGCGAAG
GGATGTTTTAAGGCGGTAAAGACCTTGGTGGACCATGGGATGAGGATCAA
GAGTCACTTAAAGGACGAGCAGGGGAAGGCGGGCTTGAGGGATCTGGCGA
GAGTGGCGGTGTCAAATAGCGTGGTTCTAATGCAAGCAGAGAGGGCGTTG
ATGGTGGGGGAAACGGAGGGGGAGGGAGGGAAGGAGGCGAGGAGGAAGAG
CAGGAAGATGAAGAGGGCGAAGGTAAGCTTGACCTTCGCCGCGCACCGGC
AGTTCCCGGTGCTGTCTGTAACGGTGCCGGAGTAA
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protein sequence of NO04G00210.1

>NO04G00210.1-protein ID=NO04G00210.1-protein|Name=NO04G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MLTYTDFQDNHQCWEEEEEEEEGMEGRKECGEAEEGGREEARGQVLEDAK
GCFKAVKTLVDHGMRIKSHLKDEQGKAGLRDLARVAVSNSVVLMQAERAL
MVGETEGEGGKEARRKSRKMKRAKVSLTFAAHRQFPVLSVTVPE*
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Synonyms
Publications