NO04G00130, NO04G00130 (gene) Nannochloropsis oceanica

Overview
NameNO04G00130
Unique NameNO04G00130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2223
Alignment locationchr4:60152..62374 -

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Properties
Property NameValue
DescriptionCop9 constitutive photomorphogenic subunit 8-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:60152..62374 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR033464CSN8_PSD8_EIF3K
Homology
[Close]
BLAST of NO04G00130 vs. NCBI_GenBank
Match: EWM28412.1 (COP9 signalosome, subunit CSN8 [Nannochloropsis gaditana])

HSP 1 Score: 141.7 bits (356), Expect = 2.000e-30
Identity = 72/123 (58.54%), Postives = 89/123 (72.36%), Query Frame = 0 
Query:   26 PLTEQLANALSQHDYSLALRVANELEIGIQTNQFDTAYGNPQLLLAAQILLLLILNDLDNARHLWRRIDSTLRDAPTAEAEQLQQAWTVGKLLWEREIPSAYAAMTGGQWAPELAPLVEALRG 149
            PLT+Q+ N L+Q DY  ALRVAN++EI + TN+     GNPQLLLA Q+LL LIL+DL NAR LWRRI + L+D    E  QL +AW VGK LW REIP+A+ A+   +W PEL PLV+ALRG
Sbjct:   27 PLTQQMRNYLAQQDYINALRVANDVEILLLTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKDVSILEGRQLSKAWDVGKSLWAREIPAAHVAIRDVRWTPELVPLVDALRG 149
[Close]
BLAST of NO04G00130 vs. NCBI_GenBank
Match: XP_005854205.1 (cop9 constitutive photomorphogenic subunit 8-like protein [Nannochloropsis gaditana CCMP526] >EKU22159.1 cop9 constitutive photomorphogenic subunit 8-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 134.4 bits (337), Expect = 3.200e-28
Identity = 73/136 (53.68%), Postives = 90/136 (66.18%), Query Frame = 0 
Query:   26 PLTEQLANALSQHDYSLALRVANELEIGI--------------QTNQFDTAYGNPQLLLAAQILLLLILNDLDNARHLWRRIDSTLRDAPTAEAEQLQQAWTVGKLLWEREIPSAYAAMTGGQWAPELAPLVEALR 148
            PLT+Q+ N L+Q DY  ALRVAN++EI +              QTN+     GNPQLLLA Q+LL LIL+DL NAR LWRRI + L++  T E  QL +AW VGK LW REIP+A+ A+   QW PEL PLV+ALR
Sbjct:   27 PLTQQMRNYLAQQDYINALRVANDVEILLLTQLTLPGHHLHISQTNKLCPGDGNPQLLLAVQLLLHLILDDLANARLLWRRIPNELKNVSTLEGRQLSKAWDVGKSLWAREIPAAHVAIRDVQWTPELVPLVDALR 162
[Close]
BLAST of NO04G00130 vs. NCBI_GenBank
Match: XP_016093196.1 (PREDICTED: COP9 signalosome complex subunit 8-like [Sinocyclocheilus grahami])

HSP 1 Score: 71.6 bits (174), Expect = 2.500e-9
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 0 
Query:   49 ELEIGIQTNQFDTAYGNPQLLLAAQILLLLIL-NDLDNARHLWRRIDSTLRDAPTAEAEQLQQAWTVGKLLWEREIPSAYAAMTGGQWAPELAPLVEALRGEE 151
            +L +  +T + +   G     + +Q+L+L +L NDL+NAR+LW+RI   ++ A      +L   W VG+ +W+R+ P  YA +   QW+  + P++EALRG E
Sbjct:   13 KLLLQFETQELEAPGGIATPQVYSQLLVLYLLHNDLNNARYLWKRIPHAIKTA----NPELAAIWAVGQRIWQRDFPGIYATIAAYQWSESILPVMEALRGTE 111
[Close]
BLAST of NO04G00130 vs. NCBI_GenBank
Match: XP_021142246.1 (COP9 signalosome complex subunit 8 [Columba livia])

HSP 1 Score: 70.1 bits (170), Expect = 7.400e-9
Identity = 33/94 (35.11%), Postives = 57/94 (60.64%), Query Frame = 0 
Query:   55 QTNQFDTAYGNPQLLLAAQILLLLIL-NDLDNARHLWRRIDSTLRDAPTAEAEQLQQAWTVGKLLWEREIPSAYAAMTGGQWAPELAPLVEALR 148
            +T + +   G    L+  Q+L L +L ND++NAR+LW+RI S ++ A      +L   W+VG+ +W+R+ P  Y  ++  QW+  + P++EALR
Sbjct:   21 ETQELEAPGGIATPLVYGQLLALYLLHNDMNNARYLWKRIPSAIKSANA----ELGAVWSVGQRIWQRDFPGIYTTISAHQWSETIQPIMEALR 110
[Close]
BLAST of NO04G00130 vs. NCBI_GenBank
Match: XP_018935153.1 (PREDICTED: COP9 signalosome complex subunit 8 isoform X1 [Cyprinus carpio])

HSP 1 Score: 70.1 bits (170), Expect = 7.400e-9
Identity = 34/97 (35.05%), Postives = 58/97 (59.79%), Query Frame = 0 
Query:   55 QTNQFDTAYGNPQLLLAAQILLLLIL-NDLDNARHLWRRIDSTLRDAPTAEAEQLQQAWTVGKLLWEREIPSAYAAMTGGQWAPELAPLVEALRGEE 151
            +T + +   G     + +Q+L+L +L ND++NAR+LW+RI   ++ A      +L   W VG+ +W+R+ P  YA +   QW+  + P++EALRG E
Sbjct:   19 ETQELEAPGGIATPQVYSQLLVLYLLHNDMNNARYLWKRIPHAIKTA----NPELAAIWAVGQRIWQRDFPGIYATIAAYQWSESILPVMEALRGTE 111
[Close]
BLAST of NO04G00130 vs. NCBI_GenBank
Match: XP_005429284.1 (PREDICTED: COP9 signalosome complex subunit 8 [Geospiza fortis])

HSP 1 Score: 69.7 bits (169), Expect = 9.700e-9
Identity = 33/94 (35.11%), Postives = 57/94 (60.64%), Query Frame = 0 
Query:   55 QTNQFDTAYGNPQLLLAAQILLLLIL-NDLDNARHLWRRIDSTLRDAPTAEAEQLQQAWTVGKLLWEREIPSAYAAMTGGQWAPELAPLVEALR 148
            +T + +   G    L+  Q+L L +L ND++NAR+LW+RI   ++ A      +L   W+VG+ +W+R+ P  Y A++  QW+  + P++EALR
Sbjct:   21 ETQELEAPGGIATPLVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANA----ELGAVWSVGQRIWQRDFPGIYTAISAHQWSETIQPIMEALR 110
[Close]
BLAST of NO04G00130 vs. NCBI_GenBank
Match: KFO64481.1 (COP9 signalosome complex subunit 8, partial [Corvus brachyrhynchos])

HSP 1 Score: 69.7 bits (169), Expect = 9.700e-9
Identity = 33/94 (35.11%), Postives = 57/94 (60.64%), Query Frame = 0 
Query:   55 QTNQFDTAYGNPQLLLAAQILLLLIL-NDLDNARHLWRRIDSTLRDAPTAEAEQLQQAWTVGKLLWEREIPSAYAAMTGGQWAPELAPLVEALR 148
            +T + +   G    L+  Q+L L +L ND++NAR+LW+RI   ++ A      +L   W+VG+ +W+R+ P  Y A++  QW+  + P++EALR
Sbjct:   20 ETQELEAPGGIATPLVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANA----ELGAVWSVGQRIWQRDFPGIYTAISAHQWSETIQPIMEALR 109
[Close]
BLAST of NO04G00130 vs. NCBI_GenBank
Match: XP_005495626.2 (PREDICTED: COP9 signalosome complex subunit 8 [Zonotrichia albicollis])

HSP 1 Score: 69.7 bits (169), Expect = 9.700e-9
Identity = 33/94 (35.11%), Postives = 57/94 (60.64%), Query Frame = 0 
Query:   55 QTNQFDTAYGNPQLLLAAQILLLLIL-NDLDNARHLWRRIDSTLRDAPTAEAEQLQQAWTVGKLLWEREIPSAYAAMTGGQWAPELAPLVEALR 148
            +T + +   G    L+  Q+L L +L ND++NAR+LW+RI   ++ A      +L   W+VG+ +W+R+ P  Y A++  QW+  + P++EALR
Sbjct:   21 ETQELEAPGGIATPLVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANA----ELGAVWSVGQRIWQRDFPGIYTAISAHQWSETIQPIMEALR 110
[Close]
BLAST of NO04G00130 vs. NCBI_GenBank
Match: XP_015490991.1 (PREDICTED: COP9 signalosome complex subunit 8 [Parus major])

HSP 1 Score: 69.7 bits (169), Expect = 9.700e-9
Identity = 33/94 (35.11%), Postives = 57/94 (60.64%), Query Frame = 0 
Query:   55 QTNQFDTAYGNPQLLLAAQILLLLIL-NDLDNARHLWRRIDSTLRDAPTAEAEQLQQAWTVGKLLWEREIPSAYAAMTGGQWAPELAPLVEALR 148
            +T + +   G    L+  Q+L L +L ND++NAR+LW+RI   ++ A      +L   W+VG+ +W+R+ P  Y A++  QW+  + P++EALR
Sbjct:   21 ETQELEAPGGIATPLVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANA----ELGAVWSVGQRIWQRDFPGIYTAISAHQWSETIQPIMEALR 110
[Close]
BLAST of NO04G00130 vs. NCBI_GenBank
Match: XP_008638938.2 (PREDICTED: COP9 signalosome complex subunit 8 [Corvus brachyrhynchos])

HSP 1 Score: 69.7 bits (169), Expect = 9.700e-9
Identity = 33/94 (35.11%), Postives = 57/94 (60.64%), Query Frame = 0 
Query:   55 QTNQFDTAYGNPQLLLAAQILLLLIL-NDLDNARHLWRRIDSTLRDAPTAEAEQLQQAWTVGKLLWEREIPSAYAAMTGGQWAPELAPLVEALR 148
            +T + +   G    L+  Q+L L +L ND++NAR+LW+RI   ++ A      +L   W+VG+ +W+R+ P  Y A++  QW+  + P++EALR
Sbjct:  136 ETQELEAPGGIATPLVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANA----ELGAVWSVGQRIWQRDFPGIYTAISAHQWSETIQPIMEALR 225
The following BLAST results are available for this feature:
BLAST of NO04G00130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28412.12.000e-3058.54COP9 signalosome, subunit CSN8 [Nannochloropsis ga... [more]
XP_005854205.13.200e-2853.68cop9 constitutive photomorphogenic subunit 8-like ... [more]
XP_016093196.12.500e-934.95PREDICTED: COP9 signalosome complex subunit 8-like... [more]
XP_021142246.17.400e-935.11COP9 signalosome complex subunit 8 [Columba livia][more]
XP_018935153.17.400e-935.05PREDICTED: COP9 signalosome complex subunit 8 isof... [more]
XP_005429284.19.700e-935.11PREDICTED: COP9 signalosome complex subunit 8 [Geo... [more]
KFO64481.19.700e-935.11COP9 signalosome complex subunit 8, partial [Corvu... [more]
XP_005495626.29.700e-935.11PREDICTED: COP9 signalosome complex subunit 8 [Zon... [more]
XP_015490991.19.700e-935.11PREDICTED: COP9 signalosome complex subunit 8 [Par... [more]
XP_008638938.29.700e-935.11PREDICTED: COP9 signalosome complex subunit 8 [Cor... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR085ncniR085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004966NSK004966Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00130.3NO04G00130.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G00130.2NO04G00130.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G00130.1NO04G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612097gene_10664Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100088g15gene2164Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00130.3NO04G00130.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G00130.2NO04G00130.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G00130.1NO04G00130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00130 ID=NO04G00130|Name=NO04G00130|organism=Nannochloropsis oceanica|type=gene|length=2223bp
ACAGGCCTCGACAAGCCGGACCCAAGACCATGGAAGTCGATGCGCCCGAA
TCTCCGCCACCGGATGCCGCTGCTGTGCCTACTACTACCACTACTTCGTC
CAAACCTTTGACCGAGCAACTGGCCAATGCCCTTTCCCAGCACGATTATT
CCCTGGCTTTGCGCGTGGCCAACGAGCTAGAGATTGGCATTCAGgtatgc
aaaggaaactgagaacaagagcgaagaaaggtctacggtggtgaagcaag
agaggctgtctgtccctgcgtgtagtttacgaagagctagcccctgaccc
cccgaccccccctcccgcctcttacacatagACGAACCAGTTTGACACAG
CTTACGGCAACCCCCAACTCCTTTTGGCGGCCCAGATCCTTCTTCTTCTC
ATTCTTAACGACCTgtacgtatcaacgctctgcttggctatcgtccccat
cccctcctccttttgacttcccaccatggtgcccctcccatgttttggaa
acccacgcaatagtactatgccgcctcgcaatgaaaatcgcgatcatgca
acactctgtactaatatccccttaatgcatcgtttttttacaccccgacc
tactgtcccaatcatttgcccccccccgctccctcccttccgtcccccct
ctctcccaccagCGACAACGCCCGACATCTGTGGCGGCGCATCGACAGCA
CCCTCAGAGACGCGCCCACGGCCGAGGCTGAACAGTTACAGCAAGCCTGG
ACCGTGGGAAAGTTGTTGTGGGAGCGgtgagaacggaggagaggagggag
agggggagaaagggaaggagggagtaaggggaggagggaggtgttcctcc
ttcatgcagccgagtcactcacctcgatgtttcttgtcttctcctccttc
cagTGAGATTCCTTCTGCCTATGCGGCCATGACAGGCGGGCAGTGGGCGC
CGGAGCTCGCCCCCTTGGTGGAGGCCCTACGGGgtgaggagggagagggg
ggaggagggagtgagggagaaagagagtgcagggtggtatgagggtcgta
ttataatgtaatattatatcattatatagtaatatgtataacaactatat
tattattattattattactattactactattattattattattattatta
ttaatattattattattattattattattattattattattattattatt
attattattattattattattattattattattattattattttattatt
attattatttattattattatattgagcatacgcttcatcggctttgttg
atggtcagcttttgctccttttctcgtgcctcaccacacgcacctctctc
ccacccccttcctcgctccctccctcctttccccgaccagGCCGCGTCCG
CCGGGACGAATTCACTCTTTTGGCCCGAGCCTACAAGCGCCTTAAGCTTA
CCACTCTGGCCGTCAAGCTGGGCACTACTCAAGCCGATGCTGTGGCCGGT
GCGAACGTCTCTCTCTCCCACCCTCTCCCTCCCTCCTCCCCTCCCTCCCT
CCCCCCTCCCTCCCTAGCTGCCCGTCAGCTCACCGTAGATGGTCGAAACG
GAACGACTCGACACGATCCGCACAGCACTCTCTCACCCCTCCCTCCCTCC
CTCCTTATTTCCAGCGGCCAGGGAGGCAGGCTGGCATGTGGACGAGAACA
AGAACGAAGTCCTACCTCTCCCGGCCCCACCGGCCCAAGGGGAGCCCCTG
Ggtgaggaggaggaagggagggagggacagggggaagggaaggtgggcgt
gtccgtctgactaaatcgctcttgtcgcatgcctcgtgccatatctcacg
attggattcgatacctttctcttcttccgtccctccctccctcccttcct
cctcccctgcagGCCTCCCTCAATTGGATCAGCTGGCCAAGTACATCTCC
TTCCTAGAAGCCAAGGACGTCACTTCCTCTGTGGCTTAGGCCCGAGGGAC
GGAGGTGGCTTTAGGGAGGGGCGCGTGGGTGTTGATAGACAGAAAGCGTT
GATAGGGAGAGGAGGTAGAGGACGAAGGGGAAAAGAAAGCGAAAGAAGAA
GAGGAAGCAACTGAGGGAAAAGAAGAAGACGCCATATCTGAATAGAATAC
GAAAAGAAGTCAAGACTCACAGCTGTACTTTTGCTTTGGTTTACGTCTCG
CGCATCCCCTCCCTCCCTTCCTT
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protein sequence of NO04G00130.3

>NO04G00130.3-protein ID=NO04G00130.3-protein|Name=NO04G00130.3|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MEVDAPESPPPDAAAVPTTTTTSSKPLTEQLANALSQHDYSLALRVANEL
EIGIQTNQFDTAYGNPQLLLAAQILLLLILNDLDNARHLWRRIDSTLRDA
PTAEAEQLQQAWTVGKLLWEREIPSAYAAMTGGQWAPELAPLVEALRGEE
GEGGGGSEGERECRVV*
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protein sequence of NO04G00130.2

>NO04G00130.2-protein ID=NO04G00130.2-protein|Name=NO04G00130.2|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MEVDAPESPPPDAAAVPTTTTTSSKPLTEQLANALSQHDYSLALRVANEL
EIGIQTNQFDTAYGNPQLLLAAQILLLLILNDLDNARHLWRRIDSTLRDA
PTAEAEQLQQAWTVGKLLWEREIPSAYAAMTGGQWAPELAPLVEALRGRV
RRDEFTLLARAYKRLKLTTLAVKLGTTQADAVAGANVSLSHPLPPSSPPS
LPPPSLAARQLTVDGRNGTTRHDPHSTLSPLPPSLLISSGQGGRLACGRE
QERSPTSPGPTGPRGAPGPPSIGSAGQVHLLPRSQGRHFLCGLGPRDGGG
FREGRVGVDRQKALIGRGGRGRRGKESERRRGSN*
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protein sequence of NO04G00130.1

>NO04G00130.1-protein ID=NO04G00130.1-protein|Name=NO04G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MEVDAPESPPPDAAAVPTTTTTSSKPLTEQLANALSQHDYSLALRVANEL
EIGIQTNQFDTAYGNPQLLLAAQILLLLILNDLDNARHLWRRIDSTLRDA
PTAEAEQLQQAWTVGKLLWEREIPSAYAAMTGGQWAPELAPLVEALRGRV
RRDEFTLLARAYKRLKLTTLAVKLGTTQADAVAAAREAGWHVDENKNEVL
PLPAPPAQGEPLGLPQLDQLAKYISFLEAKDVTSSVA*
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Synonyms
Publications