NO04G00120, NO04G00120 (gene) Nannochloropsis oceanica

Overview
NameNO04G00120
Unique NameNO04G00120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3388
Alignment locationchr4:56702..60089 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:56702..60089 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G00120 vs. NCBI_GenBank
Match: EWM28419.1 (hypothetical protein Naga_100088g14 [Nannochloropsis gaditana])

HSP 1 Score: 132.5 bits (332), Expect = 3.500e-27
Identity = 121/412 (29.37%), Postives = 169/412 (41.02%), Query Frame = 0 
Query:   32 ELERKVGALTSAVSNVQEQERSMIVALEVVRDEAKKKLAGIEDGMQALRDRLYKETTALDAL------REASTRLEARVEG----TTEEVKRMHHLSDKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLQMEVGMRGRQWRETGQATSSTKQLASVLTAR----VDRLEAIIEASEKEXXXXKTALLLLQDKVTRLTHDVYSMHTSLAEHQXXXXXXXXXXXXXXXXRTRHAQKVSEIPCNKHPHHPLPPFFPPSPASPSALVGRWLWKSGARRMVTRTGGWILWEKQAANPVLRPSLQARGXXXXXXXXXXXXXXXXXXXXXXXXXALCFAWQPMASDVGVAAGGLYQLVVGVYTSRKTPLLQIFLNNALLFSTTSPSSRRPSAFQTCV-TPCG 429
            ELERKV A+T AV   Q Q    +V +  +R   K+     E G++ LR ++ +E     A+       E  T    RVEG    T    +  H   D+                                               Q+   +  +  RE  +     ++L  V  AR       + +I  A + E    +  LLLL+ +V RLTHD++++     E +                     +  +E+  +K        +      +PS L GRWLWKSGARRMVTR GGW+LWEKQA NP    SL+A+                          A  F W+P  S VGV  GGLY LVVG++TSR  PLLQ++LN +LLF+ ++P    P A   CV TP G
Sbjct:  107 ELERKVAAMTQAVQEAQNQNGDALVGMAALRTRMKENETAAERGLRELRRQVGEEAGVWHAVHVKASPNEGGTAPMTRVEGAGHMTPPASQEAHRRMDR---------------------------------------------EAQLLDALSHKAGRE--EVDELRRRLEEVAFARDLASASAVASIKHARDMERGKEREELLLLKREVARLTHDLHTLTVEKMEGR---------------------KMNTEMAADKRSSQNDEEYVKLPLDAPSRLAGRWLWKSGARRMVTRRGGWVLWEKQATNPSFPLSLKAK---------------------VGSFEAQPFLWKPRESGVGVPLGGLYHLVVGLFTSRTVPLLQVYLNESLLFTISAPRRPIPIAVSICVFTPWG 429
The following BLAST results are available for this feature:
BLAST of NO04G00120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28419.13.500e-2729.37hypothetical protein Naga_100088g14 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR085ncniR085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004965NSK004965Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00120.1NO04G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G00120.2NO04G00120.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100088g14gene2165Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00120.1NO04G00120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G00120.2NO04G00120.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00120 ID=NO04G00120|Name=NO04G00120|organism=Nannochloropsis oceanica|type=gene|length=3388bp
ACAGGCACTTCCAGGAGCACCTGCAGTAGAACGAGCAGCCTACAATGGAG
GCCTTTTCTGCCTCGGCATCGTCCTTCTACTCGTCTGCTGCTTCTGCTGA
CAATCATCATCATCACCATCCTCCTCCTTCCTTCCATCCCGCTTTCGACG
ACGAGCCTTCATTTCCCCCTCCACCCCCCCAGTCATCGGCTCCTGCGCCA
TTTCCCTACACGCGGCACCTGGATGGTTTCCTCTACCACAAAAATTGGAC
AAATGTGCAGgtaaaataataaagaggacggcacaaggtgaatgggaaga
gggaatggagaggggaaataggaagaaagctcgaatgcacgtccttcgac
atccagttacgccctgaatacagcgtcatcgtaatcagggtgcatcaatc
tcttccgcgtagtccgaaatcggccacagacgctttttgctttcctcact
cttccgttgtcccctaccccacgttctcctttccctctcatcctccacaa
gGACACAGTCAAGGATGCTCTCTTTTTTTGTGCTCGCGCCTTACAAGAAC
AGCACCAAGAGATCCTTATATTGAAAAAGCAGCAGCGAGAGAGCCAGgtg
agaacacgagagaaaggaagggagagagaggaagcgggaggttgatgcct
gaggagtggcaaccaaggcagagagggaaggggtggagaatttatttaca
ttctcattcacagGAGAGTGAGCGAGGAGTGGCCTTGGAATTGGAAAGGA
AAGTGGGGGCATTGACGTCGGCGGTGAGCAACGTGCAAGAACAGgtaggt
aggtagggagggaagtagggagggaaggagggagggaaggagggagggag
gggttgttggtcgtcgcagcaaattttgttgatgggcgaatataacatac
atagGAACGGAGCATGATTGTGGCTCTAGAGGTGGTGCGAGACGAGGCTA
AGAAAAAGCTAGCAGGGATAGAGGATGGGATGCAAGCGgtgaggagacaa
gaagaagggaggaagggaggaagggaaggaaggagggaggagggagactg
acacactctcctcatcattacacgatatacatgcatgtgcagCTTCGTGA
TCGGCTGTACAAGGAAACGACCGCTTTGGACGCCCTAAGAGAAGCGgtat
gtgagagaatcatggtggcaagcttttttccattgtccctgtgaccttcc
ctccctccctccttccctccttccctccttcccccggcccattcctgacc
cagTCCACTCGCCTCGAGGCCAGGGTGGAGGGCACAACAGAGGAGGTTAA
GAGGATGCACCACTTATCAGACAAGCGGAGGCAGGAGGTAGAGGAGGAGG
AGGGGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAG
GAGGAGGAGGACTACTCGGACGAGGCGAATGAGGAAGAAAAGGAAGGGGA
TTGGAAGGAGCGTCTACAGATGGAGGTGGGCATGCGGGGGCGTCAATGGC
GGGAGACGGGCCAGgtgcgtgattagttagttctgtgggtggattcggtg
agggttcaggtgcacgacatgagccaatgaatggactcggtcctcgataa
ggagggcgtcgtatacatcaaacattgtcaggatggaagaggcgaggtct
tatattaatacccttctgtccttcttaggaggaaagagcataagccttat
taacaccttatattaatattaataccctcctgtgcttcttaggaaggaag
agcataagccttatcaacaccctcctgatattctcaggagggaagagacc
aaaagctcaacgagcaataggtttcattccccttctctccctactctcct
cccgcccctcctttcttggcacagGCAACGTCGAGCACCAAGCAGCTGGC
CAGCGTGTTGACAGCCCGTGTCGATCGACTGGAAGCAATTATAGAGgtga
gggatgggtggagggaaggagggaaggagggaaagagggaagagcttggg
gtatctagaagaaaatgtggttggaatcctcccgccccgtgtccaactcc
tccctccttccctccctcccctcttttccctcccctcctccctccctccc
tccctcctctctttccctccctcgtccaccatcacatcaagGCGAGTGAG
AAAGAGAAGGAGAAGGACAAGACAGCCCTCCTCCTCCTGCAAGACAAGGT
GACTCGCCTCACGCACGACGTGTACAGCATGCACACCTCCCTCGCCGAGC
ACCAGGGCGAGGAGGAGGAGGAGAAGGAGGGGGAGGTCGAAGAGGAGGGG
AAGAGGACAAGACATGCGCAAAAGGTCAGCGAAATACCGTGCAACAAACA
CCCTCACCATCCACTCCCTCCCTTCTTCCCGCCTTCACCGGCCTCGCCGT
CGGCGTTGGTGGGCCGGTGGTTGTGGAAGAGCGGCGCCAGGAGAATGGTC
ACGAGGACTGGGGGCTGGATTTTGTGGGAGgtgaggaggggagggaggga
gggagggcaggagggagggggagggaggtagtgagggcaggagggagggc
atgggagggagggagggcaggagagaaggggagggtgggagggagggcag
gagagagggagaaaagaaaagagccagacataaaaaagatgcaaggaaat
gtcttcttttgatttcctcttccatcaccctctggcccttcccttcctcc
ctgtccctccctcctctcatccagAAACAAGCGGCGAACCCCGTACTTCG
TCCCTCCCTCCAAGCCAGAGGGCCTCCTCCCCCTTCCTCCTCCTCCTCCT
TTTCAGCGGCAGGGGCAACAACAGCAAGAGCAGCAGGAGCAGCAGGAGCA
CTCTGCTTTGCGTGGCAGCCCATGGCGAGTGATGTGGGTGTGGCGGCTGG
CGGGCTTTACCAACTGGTGGTCGGTGTTTACACGTCGCGGAAGgtaggga
gggagggagggagggagggcgggggggcggggagggaggagggacggagg
gagggaggaggggggcggggaaagtactcatacatttcacgtcagcatgt
ccgcctgcctctcacctcttcttcccttcctccctccctctctccatctc
taactcacttcccctgcttggcagACTCCCCTTCTCCAAATTTTCCTCAA
CAACGCCCTCCTCTTCTCCACGACCTCTCCTTCCTCCCGCCGCCCCTCCG
CTTTCCAGACCTGTGTCACCCCCTGTGGGGACGTGGCCCCCTCCCTTTCC
CTTTCCGAGTACGTCTGTTTGCCGGCGGGGGGGCGGATAAGCATCAAGCT
CGATGTGGAGGAGGAGGGGGAGGAGGGAGGGGGGGAAGGAGGGAGGGCGA
GGCCACTGCAAGGGTTTTTGCAGCTGGTGAAGCTGTGA
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protein sequence of NO04G00120.1

>NO04G00120.1-protein ID=NO04G00120.1-protein|Name=NO04G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MEAFSASASSFYSSAASADNHHHHHPPPSFHPAFDDEPSFPPPPPQSSAP
APFPYTRHLDGFLYHKNWTNVQDTVKDALFFCARALQEQHQEILILKKQQ
RESQESERGVALELERKVGALTSAVSNVQEQERSMIVALEVVRDEAKKKL
AGIEDGMQALRDRLYKETTALDALREASTRLEARVEGTTEEVKRMHHLSD
KRRQEVEEEEGEEEEGEEEEEGEEEEEEEDYSDEANEEEKEGDWKERLQM
EVGMRGRQWRETGQATSSTKQLASVLTARVDRLEAIIEASEKEKEKDKTA
LLLLQDKVTRLTHDVYSMHTSLAEHQGEEEEEKEGEVEEEGKRTRHAQKV
SEIPCNKHPHHPLPPFFPPSPASPSALVGRWLWKSGARRMVTRTGGWILW
EKQAANPVLRPSLQARGPPPPSSSSSFSAAGATTARAAGAAGALCFAWQP
MASDVGVAAGGLYQLVVGVYTSRKTPLLQIFLNNALLFSTTSPSSRRPSA
FQTCVTPCGDVAPSLSLSEYVCLPAGGRISIKLDVEEEGEEGGGEGGRAR
PLQGFLQLVKL*
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protein sequence of NO04G00120.2

>NO04G00120.2-protein ID=NO04G00120.2-protein|Name=NO04G00120.2|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MPEEWQPRQRGKGWRIYLHSHSQESERGVALELERKVGALTSAVSNVQEQ
ERSMIVALEVVRDEAKKKLAGIEDGMQALRDRLYKETTALDALREASTRL
EARVEGTTEEVKRMHHLSDKRRQEVEEEEGEEEEGEEEEEGEEEEEEEDY
SDEANEEEKEGDWKERLQMEVGMRGRQWRETGQATSSTKQLASVLTARVD
RLEAIIEASEKEKEKDKTALLLLQDKVTRLTHDVYSMHTSLAEHQGEEEE
EKEGEVEEEGKRTRHAQKVSEIPCNKHPHHPLPPFFPPSPASPSALVGRW
LWKSGARRMVTRTGGWILWEKQAANPVLRPSLQARGPPPPSSSSSFSAAG
ATTARAAGAAGALCFAWQPMASDVGVAAGGLYQLVVGVYTSRKTPLLQIF
LNNALLFSTTSPSSRRPSAFQTCVTPCGDVAPSLSLSEYVCLPAGGRISI
KLDVEEEGEEGGGEGGRARPLQGFLQLVKL*
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Synonyms
Publications