NO03G05720, NO03G05720 (gene) Nannochloropsis oceanica

Overview
NameNO03G05720
Unique NameNO03G05720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length720
Alignment locationchr3:1643504..1644223 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1643504..1644223 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G05720 vs. NCBI_GenBank
Match: EWM30049.1 (hypothetical protein Naga_100225g9 [Nannochloropsis gaditana])

HSP 1 Score: 113.6 bits (283), Expect = 5.900e-22
Identity = 81/175 (46.29%), Postives = 108/175 (61.71%), Query Frame = 0 
Query:    1 MFSTGSRRLI---SRLVLTGPTPAPPST--TVKALSV-VSSR---LHSTAAEVPHPLSVIPTLASRSADAASKQEALTAWRTRGLIVDAGNNPHKLLGLLEKGPLDANNMVILVTRLAQACEGKEEVKAAVQADARFAQLVARVVGGVEGALEEKLSELQVLSLREGLRVLGVGG 167
            M S  SRR +    R +L       P+T  ++KA +   SSR   L +TA   P P  V  +L    A   +K++AL AWRTR +I +  ++P KLL LLE   +DA N+VILV+RLAQACEGK E   AVQ+D RFAQLV +V+GG  G + + +SELQ+ S+R  LR+LGV G
Sbjct:    1 MLSVISRRCLQTQKRFLLRSSASVHPTTSFSLKACATWPSSRRRPLSTTAEAPPPPFPVASSLRLHDA-TTTKEDALVAWRTRRVIAEVRHDPQKLLMLLEMEGMDAYNVVILVSRLAQACEGKMEATTAVQSDPRFAQLVEQVLGGKGGRVVKDMSELQMDSVRASLRLLGVEG 174
The following BLAST results are available for this feature:
BLAST of NO03G05720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30049.15.900e-2246.29hypothetical protein Naga_100225g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005294NSK005294Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05720.1NO03G05720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100225g9gene601Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05720.1NO03G05720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05720 ID=NO03G05720|Name=NO03G05720|organism=Nannochloropsis oceanica|type=gene|length=720bp
ATGTTCTCCACCGGGAGTCGCCGCTTAATCAGCCGCCTTGTCCTCACGGG
TCCTACCCCCGCTCCTCCTTCCACCACTGTCAAGGgtaagtaccagtttg
acgaggcaggagtgaaatagtgaggcttgatgtgtgtattcggcgcgcgc
gataggcgtaagggagagactctttgatggtgaggaggaggaggaggagg
aggaggtgagagacggggaggggagattctaaggagattcgggaatacaa
gccgcatacactcatgcgtctcccacgctacccgtcctcttcaacccaca
gCTCTTTCTGTCGTCTCCTCCCGTCTTCATTCGACCGCCGCCGAAGTTCC
CCATCCTCTTTCCGTAATCCCAACTCTTGCTTCGCGATCGGCCGATGCTG
CGAGCAAGCAAGAGGCTTTGACGGCATGGCGCACGCGCGGCCTGATTGTC
GACGCTGGGAATAACCCGCACAAGCTCTTGGGGCTTCTTGAAAAGGGCCC
TCTGGACGCCAACAACATGGTAATTCTCGTCACGCGCTTGGCCCAGGCCT
GCGAGGGGAAGGAGGAGGTCAAGGCCGCTGTTCAGGCGGACGCACGCTTT
GCCCAGCTGGTGGCGCGGGTGGTTGGGGGGGTGGAGGGAGCCTTGGAAGA
GAAATTAAGCGAGTTACAGGTGTTGAGTCTTCGGGAGGGACTTCGTGTCT
TGGGCGTCGGGGGCGTTTGA
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protein sequence of NO03G05720.1

>NO03G05720.1-protein ID=NO03G05720.1-protein|Name=NO03G05720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MFSTGSRRLISRLVLTGPTPAPPSTTVKALSVVSSRLHSTAAEVPHPLSV
IPTLASRSADAASKQEALTAWRTRGLIVDAGNNPHKLLGLLEKGPLDANN
MVILVTRLAQACEGKEEVKAAVQADARFAQLVARVVGGVEGALEEKLSEL
QVLSLREGLRVLGVGGV*
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Synonyms
Publications