NO03G05710, NO03G05710 (gene) Nannochloropsis oceanica

Overview
NameNO03G05710
Unique NameNO03G05710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1038
Alignment locationchr3:1640988..1642025 +

Link to JBrowse

Properties
Property NameValue
DescriptionCholine dehydrogenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1640988..1642025 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036188FAD/NAD-bd_sf
IPR007867GMC_OxRtase_C
IPR000172GMC_OxRdtase_N
Homology
BLAST of NO03G05710 vs. NCBI_GenBank
Match: EWM30046.1 (choline dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 550.8 bits (1418), Expect = 3.000e-153
Identity = 269/344 (78.20%), Postives = 306/344 (88.95%), Query Frame = 0
Query:    1 MRTGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLG-SRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVALGCANLRVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMGDVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDYRE 344
            +RTGARVTR++FD++ RATGV Y   + G +   TG+   DPR+G SR RE AA VTL A+A REV+LCAGVFFTPH+LLKSG+GPAAELEALGVPVVA++ GVGKHL+ARTNVLFF+GNGS+VPEMNPFVL +PATT+ YDLE RGPYSLGALGIYSVVKGR   +DDYI+FMTDVIPEVAPRM+ALGCANL+VHGPGGQVLLD  DPL A+HPRIQLNMAAAEEDRRA+RHCLRDVRDMMAEP+M   GF E FPT RLV++++KALD WISRGYTFYSWHATSTARMGDVLD R+RVQGGV+GLRVVDASAVP+MIEAGPMATL+MLGERAADLIKED ++
Sbjct:  262 VRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFVLNNPATTDQYDLERRGPYSLGALGIYSVVKGRKSEEDDYIMFMTDVIPEVAPRMLALGCANLKVHGPGGQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMGDVLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLIKEDNQD 605          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: XP_007326305.1 (hypothetical protein AGABI1DRAFT_69483 [Agaricus bisporus var. burnettii JB137-S8] >EKM83234.1 hypothetical protein AGABI1DRAFT_69483 [Agaricus bisporus var. burnettii JB137-S8])

HSP 1 Score: 127.5 bits (319), Expect = 8.100e-26
Identity = 98/309 (31.72%), Postives = 153/309 (49.51%), Query Frame = 0
Query:   60 HATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDP----ATTEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDY-------------ILFMTDVIPEVAPRMVALGCANLRVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLV----EDTDKALDRWISRGYTFYSWHATSTARMG------DVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDY 342
            HAT+EV+L AG   +PH+L  SG G + EL+ALG+  + ++  +GK+L     +L  +   ++  E    VL DP    A  E +     GP  L  +   SV+ GR P D  +             +L   ++ P  AP + A    ++      G + ++ +DP     P I      AE D  A R  +R+ R   A         +E + TH L      +TD  LD +IS  +T  +WH  STA+M        V+D  ++V+ GV+GLR+VDAS +P ++ A  MA ++++ ERAAD+IK+D+
Sbjct:  232 HATKEVILSAGAIGSPHLLFHSGFGDSEELKALGINPLVDLPSLGKNLTDHAFLLVDFAGENI--EQKCVVLADPNVLEAALEEWKKSRTGP--LSNILTNSVIWGRLPPDSPFDDPSAGPNSPHWELLLSVNLGPTPAPHLTA--AIDIVSPASRGTLSINSSDPFAP--PIIDPAFFTAEVDVAAARDAIRNARKFFAAKA------WEGYVTHELPPSAGAETDDELDAFISDVFT-TTWHGCSTAKMTPKGADYGVVDPDLKVK-GVRGLRIVDASVMPFVVSAHTMAAVYVIAERAADMIKQDW 524          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: XP_006458714.1 (hypothetical protein AGABI2DRAFT_183673 [Agaricus bisporus var. bisporus H97] >EKV50675.1 hypothetical protein AGABI2DRAFT_183673 [Agaricus bisporus var. bisporus H97])

HSP 1 Score: 126.3 bits (316), Expect = 1.800e-25
Identity = 99/309 (32.04%), Postives = 154/309 (49.84%), Query Frame = 0
Query:   60 HATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDP----ATTEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDY-------------ILFMTDVIPEVAPRMVALGCANLRVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLV----EDTDKALDRWISRGYTFYSWHATSTARMG------DVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDY 342
            HAT+EV+L AG   +PH+L  SG G + EL+ALG+  + ++  +GK+L     +L  +   ++  E N  VL DP    A  E +     GP  L  +   SV+ GR P D  +             +L   ++ P  AP + A    ++      G + ++ +DP     P I      AE D  A R  +R+ R   A         +E + TH L      +TD  LD +IS  +T  +WH  STA+M        V+D  ++V+ GV+GLR+VDAS +P ++ A  MA ++++ ERAAD+IK+D+
Sbjct:  295 HATKEVILSAGAIGSPHLLFHSGFGDSEELKALGINPLVDLPSLGKNLTDHAFLLVDFAGENI--EQN--VLADPNVLEAALEEWKKSRTGP--LSNILTNSVIWGRLPPDSPFDDPSAGPNSPHWELLLSVNLGPTPAPHLTA--AIDIVSPASRGTLSINSSDPFAP--PIIDPAFFTAEVDVAAARDAIRNARKFFAAKA------WEGYVTHELPPSAGAETDDELDAFISDVFT-TTWHGCSTAKMTPKGADYGVVDPDLKVK-GVRGLRIVDASVMPFVVSAHTMAAVYVIAERAADMIKQDW 585          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_012838032.1 (choline dehydrogenase [Comamonas testosteroni] >ACY32673.1 glucose-methanol-choline oxidoreductase [Comamonas testosteroni CNB-2])

HSP 1 Score: 125.2 bits (313), Expect = 4.000e-25
Identity = 97/307 (31.60%), Postives = 154/307 (50.16%), Query Frame = 0
Query:   48 GREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLAR--TNVLFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGR--YPGDDDYILFMTDVIPEVAPRM------VALGCANLRVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKED 341
            GRE + R  L      EV+L AG   TP +L  SG+G  A L++LG+PV   + GVG++ +    T + +   N   + EM+    R  A    Y  + +G  +LG   ++  VK R   P  D    F+       A R+      + +G A LR     G +     DP+  + P I+ N  ++E DR  + + ++  R+++A+P +     +E+ P  +++ DTD  L+   + G T Y  H   T RMG+    V+D R+R++ G+ GLRVVDAS +P M+     A + M+ E+ ADLI ED
Sbjct:  236 GREVSVRAQL------EVILAAGAIQTPQLLELSGIGQPALLQSLGIPVRHALQGVGENYIDHFATRMNWRVKNTVTLNEMSR-GWRLAAAVSQYFTQRKGILTLGTGLVHGFVKSRADLPAPDAQYFFVHASYANAAERILDRAPGMTIGVAQLRPESV-GSIHAKSADPM--QGPSIRPNFLSSEVDRHCIVNSMKLARNIVAQPALAQFIAHEMSPGRKVITDTD-WLEFARANGQTIY--HPLGTCRMGEDEQAVVDSRLRLR-GLSGLRVVDASVMPKMVSGNIQAAVMMVAEKGADLILED 528          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_074288105.1 (glucose-methanol-choline oxidoreductase [Burkholderia sp. GAS332] >SIO70354.1 Choline dehydrogenase [Burkholderia sp. GAS332])

HSP 1 Score: 125.2 bits (313), Expect = 4.000e-25
Identity = 104/308 (33.77%), Postives = 151/308 (49.03%), Query Frame = 0
Query:   45 GSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFY--GNGSVVPEMNPFVLRDPATTEMYDLEHRGPY--SLGALGIYSVVKGRYPGDDDYILFMTDVIPEVA----PRMVALGCANLRVHGPG--GQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWI-SRGYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338
            G+R R A    T+HA   REV+LCAG F TP +L+ SGVGPA EL+  G+ V  +++GVG++LL   + +  Y   + SV        +R P     +  + RGP   +    G ++  +G     D    F+     +      P    + C ++ V  P   GQV L   DP  A  P I  N  A  ED R L +  R  + +M +P        ++ P     + ++ AL+R I SR  T Y  H   T RMG     V+DD++RV+ G+ GLRVVDAS +P ++     A   M+ E+AADLI
Sbjct:  237 GARCRGAGGDFTIHAR--REVILCAGAFQTPQLLMLSGVGPADELQRHGIAVRHHLAGVGRNLLDHVDYIALYQTHDDSVFGITLKQAMRLPGMIRAWRRDGRGPLTTNFAEAGGFARTRGDLERPDVQFHFLVGFAEDHGRRRYPGRYGMSC-HVCVLRPKSVGQVTLSGADPQLA--PVIHPNFLAEPEDMRTLINGYRITQKIMQQPAFARYRLRDMHPP----QSSEDALERQIRSRADTIY--HPVGTCRMGSDRLAVVDDQLRVR-GLTGLRVVDASVMPTLVGGNTNAPTIMIAEKAADLI 532          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: GBD43236.1 (Alcohol dehydrogenase [acceptor] [bacterium HR40])

HSP 1 Score: 125.2 bits (313), Expect = 4.000e-25
Identity = 123/363 (33.88%), Postives = 168/363 (46.28%), Query Frame = 0
Query:    1 MRTGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGK----HLLARTNVLFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRM---------VALGCANLRVHGPGGQVLL--DPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMGD------VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDYR 343
            +RTGA   R+LFD  +RA GV Y                   R G R R  AA         REV++  G   +P +L+ SGVGPA EL A G+PVV ++ GVGK    H  ART  ++       + ++   + R       + L   GP ++GA  +    K R   D   + F   VIP  A R            +    LR    G   L   DP DP     PRI  N  A E DRR +   L+ VR +MA+P M      E  P      D ++ LD     G T +  H TST  MG       V+D+R+RV+ G++GLRVVDAS +P ++ A   A + M+ E+A+D+I+ED R
Sbjct:  216 VRTGALACRILFD-GRRAIGVEY------------------ERDGVRCRVRAA---------REVLVACGAVQSPQLLMLSGVGPADELSAFGIPVVQDLPGVGKQLQDHFQART--VWRCSRPLTLNDVQHSLWRRIRAGIEWALFRTGPLTVGAGIVTLFWKTRDELDLADVEF--HVIPFSADRPGEKLHPFSGFTVSVCQLRPESRGEIRLRSPDPRDP-----PRIFANYLATETDRRTMVDGLKLVRRVMAQPAMAPWCEQEYLPGIDCRSD-EELLDFVRRTGSTIF--HPTSTCAMGPAEERLAVVDERLRVR-GLEGLRVVDASIMPAVVSANTNAAVIMIAEKASDMIREDER 537          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: PMD32276.1 (GMC oxidoreductase [Meliniomyces variabilis F])

HSP 1 Score: 124.8 bits (312), Expect = 5.300e-25
Identity = 114/364 (31.32%), Postives = 163/364 (44.78%), Query Frame = 0
Query:    3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGD---------DDYILFMTDVIPEVAPRMVA-------LGCANLRVHGP--GGQVLLDP---TDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEP-IMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMG------DVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIK 339
            T  + +++LFD NK A GV+   A    + S                           AT+EV+L AGVF +P +L+ SG+GPAA LE+  +PV++N+SGVG++L     + F   +G  +P   P    + +T + Y  +  GPYS  A G  S  K   P D          D +  + +  PE+   ++A       +G  +  +  P   G V +     TDP     P I LN  +   D   L    R  R     P I       EI P   L   TD+ +  WI R      WHA+S+ +MG       V+D + RV  GVQGLRVVD S++P  +   P  T +ML E+ AD IK
Sbjct:  279 THTQASKILFDSNKTANGVLVNTAGFEYIIS---------------------------ATQEVILSAGVFHSPQLLMLSGIGPAATLESFDIPVISNMSGVGQNLW--DQIFFDVLSGVNLPAFIPTPENEASTLQSYLQDQEGPYS-SAGGYVSFEK--IPQDLRQNFSQRTQDLLATLPEDWPEIEYIVLAYPGANSTIGAVSATIEAPFSRGNVTISSSSITDP-----PVINLNWLSDPADEELLVAAFRRCRQAWDSPAIQQVRVGPEIAP--GLATQTDEEILAWI-RLNLGIQWHASSSNKMGVEGDPLAVVDSKARV-FGVQGLRVVDVSSIPFSVPGHPSGTAYMLAEKIADDIK 601          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_018915024.1 (hypothetical protein [Thiomonas sp. FB-6])

HSP 1 Score: 124.0 bits (310), Expect = 9.000e-25
Identity = 111/350 (31.71%), Postives = 159/350 (45.43%), Query Frame = 0
Query:    1 MRTGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVL-----FFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGA--LGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVALGCANLRVHG--PGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338
            +RTG  VTRVLF+  +RA GV Y                    LG +G            A  EV++CAG   +P +LL SG+G A  L ALG+P+V +  GVG++L    +V        + +  V P M P +L   A    Y   H G  S  A   G ++  +      D  + F+  ++ +   R+V    A L V    P  +  +    P   + PRI     +  +D   LR  LR  R ++A P    +G  E+ P   LV D D ALD +I R +    +H   + RMGD    V+D R+RV+ GV  LRV DAS +P ++     A   M+GE AAD +
Sbjct:  218 VRTGCHVTRVLFE-GRRAVGVEY--------------------LGPQGLR-------RMRARAEVLVCAGAVHSPQLLLLSGLGEAPALRALGIPLVLDAPGVGRNLQDHLDVTVSMREHSHASVGVGPRMLPRLL---AAAWTYARRHDGLLSSNAAEAGGFARSRAGLERPDLQLHFLPSLLRDHGRRLVWGYGATLHVCALRPASRGRISLRSPDARQAPRIDPAYLSHPDDLPVLRDGLRLARRLLASPAWGPHGGIELAP-GALVGDEDDALDAYI-RAHAETIYHPVGSCRMGDDDLAVVDSRLRVR-GVDALRVADASIMPTLVGGNTNAPAMMIGEMAADFL 533          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_011906923.1 (MULTISPECIES: choline dehydrogenase [Novosphingobium] >ABP64539.1 glucose-methanol-choline oxidoreductase (plasmid) [Novosphingobium aromaticivorans DSM 12444] >SCY97687.1 choline dehydrogenase [Novosphingobium stygium])

HSP 1 Score: 122.1 bits (305), Expect = 3.400e-24
Identity = 112/343 (32.65%), Postives = 164/343 (47.81%), Query Frame = 0
Query:    8 TRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGN---GSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGD--DDYILFMTDVIPEVAPRMVALG--CANLRVHGP--GGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMG----DVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338
            TR +  +N RATGV++                         R+ A R+ L   A REV+L AG   +P IL+ SG+GPAA L   G+ V+ ++ GVG+ L         Y +    S++  +NP  LR       Y L  RGP +   + +  +V+     D  D  +L ++ +  +    MV +    A++ V  P   G V L   DP     P I  N  AA+EDRRA+R  +R  R + A+P        E+ P   +  ++D  +D +I R      +H+TSTARMG     V+DDR+RV  GV  LRVVDAS +P +        + M+ E+AADLI
Sbjct:  220 TRRIVIENGRATGVIFR------------------------RKGADRLAL---AAREVILSAGAINSPQILMLSGLGPAAHLAEHGIQVLHDLPGVGQGLQDHLAAHVKYRSTKPWSMLRYLNP--LRGALAMAQYALLRRGPLADPGMSVACMVRSDPSLDEPDIKMLLVSALFAQNGREMVPMHGFYAHINVARPQSRGSVTLASADP--EVPPVIDQNYNAAQEDRRAMREGVRIARRIFAQPAFDIMRGEELAPGSGV--ESDAQIDAYI-RATAEADYHSTSTARMGRDPMAVVDDRLRVH-GVAALRVVDASVMPHLPGGNTAIPVAMIAEKAADLI 527          
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_062342596.1 (choline dehydrogenase, partial [Novosphingobium sp. CCH12-A3])

HSP 1 Score: 121.7 bits (304), Expect = 4.400e-24
Identity = 113/351 (32.19%), Postives = 155/351 (44.16%), Query Frame = 0
Query:    3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFV-LRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGD--DDYILFMTDVIPEVAPRMV-----ALGCANLRVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWI-SRGYTFYSWHATSTARMGDVLDDRMRVQG------GVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIK 339
            TGARV RV+ + N RA GV Y++ +   V                           A ATREV+LCAG F +P IL  SG+G    L+A GV  V  + GVG +L    +V   +     +   N    LR       Y L  +G      L   + +K R   D  D  I F+  ++ E A          +    LR     GQV L   DP     P I  N  AAEEDRR +R  +R  R++  +  +      EI+P   +  D D  +D W+ +RG T Y  H   TA+MG   DD M V        G++GLRV+DAS +P +I     A   M+ E+ AD+I+
Sbjct:   80 TGARVHRVVVE-NGRAVGVEYSLGQGKPVS-------------------------RASATREVLLCAGAFQSPQILQLSGIGDPEALKAKGVVPVHVLKGVGANLQDHLDVTLNWACTQPISLYNEIKGLRQLKVGLQYLLTGKGTGRQNGLEAGAFLKSRPDLDRPDLQIHFVIAIMQEHAKVQAKRDGFTIHVCQLRPES-RGQVSLSSADPYA--DPAILANFLAAEEDRRVVREGIRIAREVAGQEALAPYRGEEIWPGAHVQSDAD--IDAWVRARGETIY--HPVGTAKMG-TRDDPMAVVDKDCKVMGLEGLRVIDASVMPTLIGGNTNAPTIMIAEKIADVIR 396          
The following BLAST results are available for this feature:
BLAST of NO03G05710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30046.13.000e-15378.20choline dehydrogenase [Nannochloropsis gaditana][more]
XP_007326305.18.100e-2631.72hypothetical protein AGABI1DRAFT_69483 [Agaricus b... [more]
XP_006458714.11.800e-2532.04hypothetical protein AGABI2DRAFT_183673 [Agaricus ... [more]
WP_012838032.14.000e-2531.60choline dehydrogenase [Comamonas testosteroni] >AC... [more]
WP_074288105.14.000e-2533.77glucose-methanol-choline oxidoreductase [Burkholde... [more]
GBD43236.14.000e-2533.88Alcohol dehydrogenase [acceptor] [bacterium HR40][more]
PMD32276.15.300e-2531.32GMC oxidoreductase [Meliniomyces variabilis F][more]
WP_018915024.19.000e-2531.71hypothetical protein [Thiomonas sp. FB-6][more]
WP_011906923.13.400e-2432.65MULTISPECIES: choline dehydrogenase [Novosphingobi... [more]
WP_062342596.14.400e-2432.19choline dehydrogenase, partial [Novosphingobium sp... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05710.1NO03G05710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05710.1NO03G05710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05710 ID=NO03G05710|Name=NO03G05710|organism=Nannochloropsis oceanica|type=gene|length=1038bp
ATGCGCACCGGGGCCCGCGTCACGCGAGTTCTATTCGACAAAAATAAACG
TGCTACAGGTGTCGTGTACACCGTGGCAGAATCGGGCGATGTTGACTCCT
CAACTGGCATAAATCGTAACGACCCGCGCCTCGGCAGCCGGGGCCGGGAA
GCCGCTGCCCGTGTAACACTTCATGCCCATGCCACGCGAGAGGTTGTTTT
ATGTGCGGGCGTTTTTTTCACGCCCCATATACTCCTTAAATCAGGTGTCG
GACCTGCTGCGGAGCTCGAGGCCCTGGGCGTACCCGTGGTAGCAAACGTG
TCGGGGGTAGGGAAGCACTTACTGGCCCGAACAAACGTGCTCTTCTTCTA
CGGGAATGGCTCGGTGGTGCCGGAAATGAATCCTTTCGTTCTGCGAGATC
CGGCAACCACGGAGATGTATGATTTAGAGCACCGAGGTCCCTATAGCTTG
GGGGCTCTGGGCATCTACAGCGTTGTCAAGGGCCGTTACCCTGGAGACGA
CGATTACATCCTGTTCATGACGGACGTGATCCCCGAAGTGGCCCCACGCA
TGGTCGCCTTGGGCTGCGCCAATTTGCGGGTTCATGGACCTGGTGGACAG
GTACTGCTGGACCCCACTGATCCCTTAGGGGCAAAACACCCGCGCATCCA
ACTCAACATGGCAGCTGCGGAGGAAGACCGGCGGGCTTTGCGGCACTGCT
TGCGGGATGTGCGGGATATGATGGCCGAACCCATCATGACCACCAATGGA
TTTTACGAAATTTTCCCGACGCATCGACTGGTGGAGGATACAGATAAGGC
CCTGGATCGCTGGATCAGTAGGGGCTACACGTTCTATAGCTGGCACGCGA
CGAGCACGGCCCGAATGGGAGACGTGCTGGATGATCGTATGCGTGTGCAA
GGGGGCGTTCAAGGCTTGCGGGTGGTAGATGCAAGTGCAGTGCCAGACAT
GATCGAGGCTGGGCCAATGGCCACGTTGTTTATGCTGGGGGAGCGGGCCG
CGGATCTGATCAAGGAAGACTATCGGGAAAATACATAG
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protein sequence of NO03G05710.1

>NO03G05710.1-protein ID=NO03G05710.1-protein|Name=NO03G05710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MRTGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGRE
AAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANV
SGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSL
GALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVALGCANLRVHGPGGQ
VLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNG
FYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMGDVLDDRMRVQ
GGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDYRENT*
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Synonyms
Publications