NO03G05710, NO03G05710 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G05710 vs. NCBI_GenBank
Match: EWM30046.1 (choline dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 550.8 bits (1418), Expect = 3.000e-153 Identity = 269/344 (78.20%), Postives = 306/344 (88.95%), Query Frame = 0 Query: 1 MRTGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLG-SRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVALGCANLRVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMGDVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDYRE 344 +RTGARVTR++FD++ RATGV Y + G + TG+ DPR+G SR RE AA VTL A+A REV+LCAGVFFTPH+LLKSG+GPAAELEALGVPVVA++ GVGKHL+ARTNVLFF+GNGS+VPEMNPFVL +PATT+ YDLE RGPYSLGALGIYSVVKGR +DDYI+FMTDVIPEVAPRM+ALGCANL+VHGPGGQVLLD DPL A+HPRIQLNMAAAEEDRRA+RHCLRDVRDMMAEP+M GF E FPT RLV++++KALD WISRGYTFYSWHATSTARMGDVLD R+RVQGGV+GLRVVDASAVP+MIEAGPMATL+MLGERAADLIKED ++ Sbjct: 262 VRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFVLNNPATTDQYDLERRGPYSLGALGIYSVVKGRKSEEDDYIMFMTDVIPEVAPRMLALGCANLKVHGPGGQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMGDVLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLIKEDNQD 605
BLAST of NO03G05710 vs. NCBI_GenBank
Match: XP_007326305.1 (hypothetical protein AGABI1DRAFT_69483 [Agaricus bisporus var. burnettii JB137-S8] >EKM83234.1 hypothetical protein AGABI1DRAFT_69483 [Agaricus bisporus var. burnettii JB137-S8]) HSP 1 Score: 127.5 bits (319), Expect = 8.100e-26 Identity = 98/309 (31.72%), Postives = 153/309 (49.51%), Query Frame = 0 Query: 60 HATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDP----ATTEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDY-------------ILFMTDVIPEVAPRMVALGCANLRVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLV----EDTDKALDRWISRGYTFYSWHATSTARMG------DVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDY 342 HAT+EV+L AG +PH+L SG G + EL+ALG+ + ++ +GK+L +L + ++ E VL DP A E + GP L + SV+ GR P D + +L ++ P AP + A ++ G + ++ +DP P I AE D A R +R+ R A +E + TH L +TD LD +IS +T +WH STA+M V+D ++V+ GV+GLR+VDAS +P ++ A MA ++++ ERAAD+IK+D+ Sbjct: 232 HATKEVILSAGAIGSPHLLFHSGFGDSEELKALGINPLVDLPSLGKNLTDHAFLLVDFAGENI--EQKCVVLADPNVLEAALEEWKKSRTGP--LSNILTNSVIWGRLPPDSPFDDPSAGPNSPHWELLLSVNLGPTPAPHLTA--AIDIVSPASRGTLSINSSDPFAP--PIIDPAFFTAEVDVAAARDAIRNARKFFAAKA------WEGYVTHELPPSAGAETDDELDAFISDVFT-TTWHGCSTAKMTPKGADYGVVDPDLKVK-GVRGLRIVDASVMPFVVSAHTMAAVYVIAERAADMIKQDW 524
BLAST of NO03G05710 vs. NCBI_GenBank
Match: XP_006458714.1 (hypothetical protein AGABI2DRAFT_183673 [Agaricus bisporus var. bisporus H97] >EKV50675.1 hypothetical protein AGABI2DRAFT_183673 [Agaricus bisporus var. bisporus H97]) HSP 1 Score: 126.3 bits (316), Expect = 1.800e-25 Identity = 99/309 (32.04%), Postives = 154/309 (49.84%), Query Frame = 0 Query: 60 HATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDP----ATTEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDY-------------ILFMTDVIPEVAPRMVALGCANLRVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLV----EDTDKALDRWISRGYTFYSWHATSTARMG------DVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDY 342 HAT+EV+L AG +PH+L SG G + EL+ALG+ + ++ +GK+L +L + ++ E N VL DP A E + GP L + SV+ GR P D + +L ++ P AP + A ++ G + ++ +DP P I AE D A R +R+ R A +E + TH L +TD LD +IS +T +WH STA+M V+D ++V+ GV+GLR+VDAS +P ++ A MA ++++ ERAAD+IK+D+ Sbjct: 295 HATKEVILSAGAIGSPHLLFHSGFGDSEELKALGINPLVDLPSLGKNLTDHAFLLVDFAGENI--EQN--VLADPNVLEAALEEWKKSRTGP--LSNILTNSVIWGRLPPDSPFDDPSAGPNSPHWELLLSVNLGPTPAPHLTA--AIDIVSPASRGTLSINSSDPFAP--PIIDPAFFTAEVDVAAARDAIRNARKFFAAKA------WEGYVTHELPPSAGAETDDELDAFISDVFT-TTWHGCSTAKMTPKGADYGVVDPDLKVK-GVRGLRIVDASVMPFVVSAHTMAAVYVIAERAADMIKQDW 585
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_012838032.1 (choline dehydrogenase [Comamonas testosteroni] >ACY32673.1 glucose-methanol-choline oxidoreductase [Comamonas testosteroni CNB-2]) HSP 1 Score: 125.2 bits (313), Expect = 4.000e-25 Identity = 97/307 (31.60%), Postives = 154/307 (50.16%), Query Frame = 0 Query: 48 GREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLAR--TNVLFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGR--YPGDDDYILFMTDVIPEVAPRM------VALGCANLRVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKED 341 GRE + R L EV+L AG TP +L SG+G A L++LG+PV + GVG++ + T + + N + EM+ R A Y + +G +LG ++ VK R P D F+ A R+ + +G A LR G + DP+ + P I+ N ++E DR + + ++ R+++A+P + +E+ P +++ DTD L+ + G T Y H T RMG+ V+D R+R++ G+ GLRVVDAS +P M+ A + M+ E+ ADLI ED Sbjct: 236 GREVSVRAQL------EVILAAGAIQTPQLLELSGIGQPALLQSLGIPVRHALQGVGENYIDHFATRMNWRVKNTVTLNEMSR-GWRLAAAVSQYFTQRKGILTLGTGLVHGFVKSRADLPAPDAQYFFVHASYANAAERILDRAPGMTIGVAQLRPESV-GSIHAKSADPM--QGPSIRPNFLSSEVDRHCIVNSMKLARNIVAQPALAQFIAHEMSPGRKVITDTD-WLEFARANGQTIY--HPLGTCRMGEDEQAVVDSRLRLR-GLSGLRVVDASVMPKMVSGNIQAAVMMVAEKGADLILED 528
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_074288105.1 (glucose-methanol-choline oxidoreductase [Burkholderia sp. GAS332] >SIO70354.1 Choline dehydrogenase [Burkholderia sp. GAS332]) HSP 1 Score: 125.2 bits (313), Expect = 4.000e-25 Identity = 104/308 (33.77%), Postives = 151/308 (49.03%), Query Frame = 0 Query: 45 GSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFY--GNGSVVPEMNPFVLRDPATTEMYDLEHRGPY--SLGALGIYSVVKGRYPGDDDYILFMTDVIPEVA----PRMVALGCANLRVHGPG--GQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWI-SRGYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338 G+R R A T+HA REV+LCAG F TP +L+ SGVGPA EL+ G+ V +++GVG++LL + + Y + SV +R P + + RGP + G ++ +G D F+ + P + C ++ V P GQV L DP A P I N A ED R L + R + +M +P ++ P + ++ AL+R I SR T Y H T RMG V+DD++RV+ G+ GLRVVDAS +P ++ A M+ E+AADLI Sbjct: 237 GARCRGAGGDFTIHAR--REVILCAGAFQTPQLLMLSGVGPADELQRHGIAVRHHLAGVGRNLLDHVDYIALYQTHDDSVFGITLKQAMRLPGMIRAWRRDGRGPLTTNFAEAGGFARTRGDLERPDVQFHFLVGFAEDHGRRRYPGRYGMSC-HVCVLRPKSVGQVTLSGADPQLA--PVIHPNFLAEPEDMRTLINGYRITQKIMQQPAFARYRLRDMHPP----QSSEDALERQIRSRADTIY--HPVGTCRMGSDRLAVVDDQLRVR-GLTGLRVVDASVMPTLVGGNTNAPTIMIAEKAADLI 532
BLAST of NO03G05710 vs. NCBI_GenBank
Match: GBD43236.1 (Alcohol dehydrogenase [acceptor] [bacterium HR40]) HSP 1 Score: 125.2 bits (313), Expect = 4.000e-25 Identity = 123/363 (33.88%), Postives = 168/363 (46.28%), Query Frame = 0 Query: 1 MRTGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGK----HLLARTNVLFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGDDDYILFMTDVIPEVAPRM---------VALGCANLRVHGPGGQVLL--DPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMGD------VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIKEDYR 343 +RTGA R+LFD +RA GV Y R G R R AA REV++ G +P +L+ SGVGPA EL A G+PVV ++ GVGK H ART ++ + ++ + R + L GP ++GA + K R D + F VIP A R + LR G L DP DP PRI N A E DRR + L+ VR +MA+P M E P D ++ LD G T + H TST MG V+D+R+RV+ G++GLRVVDAS +P ++ A A + M+ E+A+D+I+ED R Sbjct: 216 VRTGALACRILFD-GRRAIGVEY------------------ERDGVRCRVRAA---------REVLVACGAVQSPQLLMLSGVGPADELSAFGIPVVQDLPGVGKQLQDHFQART--VWRCSRPLTLNDVQHSLWRRIRAGIEWALFRTGPLTVGAGIVTLFWKTRDELDLADVEF--HVIPFSADRPGEKLHPFSGFTVSVCQLRPESRGEIRLRSPDPRDP-----PRIFANYLATETDRRTMVDGLKLVRRVMAQPAMAPWCEQEYLPGIDCRSD-EELLDFVRRTGSTIF--HPTSTCAMGPAEERLAVVDERLRVR-GLEGLRVVDASIMPAVVSANTNAAVIMIAEKASDMIREDER 537
BLAST of NO03G05710 vs. NCBI_GenBank
Match: PMD32276.1 (GMC oxidoreductase [Meliniomyces variabilis F]) HSP 1 Score: 124.8 bits (312), Expect = 5.300e-25 Identity = 114/364 (31.32%), Postives = 163/364 (44.78%), Query Frame = 0 Query: 3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGD---------DDYILFMTDVIPEVAPRMVA-------LGCANLRVHGP--GGQVLLDP---TDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEP-IMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMG------DVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIK 339 T + +++LFD NK A GV+ A + S AT+EV+L AGVF +P +L+ SG+GPAA LE+ +PV++N+SGVG++L + F +G +P P + +T + Y + GPYS A G S K P D D + + + PE+ ++A +G + + P G V + TDP P I LN + D L R R P I EI P L TD+ + WI R WHA+S+ +MG V+D + RV GVQGLRVVD S++P + P T +ML E+ AD IK Sbjct: 279 THTQASKILFDSNKTANGVLVNTAGFEYIIS---------------------------ATQEVILSAGVFHSPQLLMLSGIGPAATLESFDIPVISNMSGVGQNLW--DQIFFDVLSGVNLPAFIPTPENEASTLQSYLQDQEGPYS-SAGGYVSFEK--IPQDLRQNFSQRTQDLLATLPEDWPEIEYIVLAYPGANSTIGAVSATIEAPFSRGNVTISSSSITDP-----PVINLNWLSDPADEELLVAAFRRCRQAWDSPAIQQVRVGPEIAP--GLATQTDEEILAWI-RLNLGIQWHASSSNKMGVEGDPLAVVDSKARV-FGVQGLRVVDVSSIPFSVPGHPSGTAYMLAEKIADDIK 601
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_018915024.1 (hypothetical protein [Thiomonas sp. FB-6]) HSP 1 Score: 124.0 bits (310), Expect = 9.000e-25 Identity = 111/350 (31.71%), Postives = 159/350 (45.43%), Query Frame = 0 Query: 1 MRTGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVL-----FFYGNGSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGA--LGIYSVVKGRYPGDDDYILFMTDVIPEVAPRMVALGCANLRVHG--PGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMGD----VLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338 +RTG VTRVLF+ +RA GV Y LG +G A EV++CAG +P +LL SG+G A L ALG+P+V + GVG++L +V + + V P M P +L A Y H G S A G ++ + D + F+ ++ + R+V A L V P + + P + PRI + +D LR LR R ++A P +G E+ P LV D D ALD +I R + +H + RMGD V+D R+RV+ GV LRV DAS +P ++ A M+GE AAD + Sbjct: 218 VRTGCHVTRVLFE-GRRAVGVEY--------------------LGPQGLR-------RMRARAEVLVCAGAVHSPQLLLLSGLGEAPALRALGIPLVLDAPGVGRNLQDHLDVTVSMREHSHASVGVGPRMLPRLL---AAAWTYARRHDGLLSSNAAEAGGFARSRAGLERPDLQLHFLPSLLRDHGRRLVWGYGATLHVCALRPASRGRISLRSPDARQAPRIDPAYLSHPDDLPVLRDGLRLARRLLASPAWGPHGGIELAP-GALVGDEDDALDAYI-RAHAETIYHPVGSCRMGDDDLAVVDSRLRVR-GVDALRVADASIMPTLVGGNTNAPAMMIGEMAADFL 533
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_011906923.1 (MULTISPECIES: choline dehydrogenase [Novosphingobium] >ABP64539.1 glucose-methanol-choline oxidoreductase (plasmid) [Novosphingobium aromaticivorans DSM 12444] >SCY97687.1 choline dehydrogenase [Novosphingobium stygium]) HSP 1 Score: 122.1 bits (305), Expect = 3.400e-24 Identity = 112/343 (32.65%), Postives = 164/343 (47.81%), Query Frame = 0 Query: 8 TRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGN---GSVVPEMNPFVLRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGD--DDYILFMTDVIPEVAPRMVALG--CANLRVHGP--GGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWISRGYTFYSWHATSTARMG----DVLDDRMRVQGGVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLI 338 TR + +N RATGV++ R+ A R+ L A REV+L AG +P IL+ SG+GPAA L G+ V+ ++ GVG+ L Y + S++ +NP LR Y L RGP + + + +V+ D D +L ++ + + MV + A++ V P G V L DP P I N AA+EDRRA+R +R R + A+P E+ P + ++D +D +I R +H+TSTARMG V+DDR+RV GV LRVVDAS +P + + M+ E+AADLI Sbjct: 220 TRRIVIENGRATGVIFR------------------------RKGADRLAL---AAREVILSAGAINSPQILMLSGLGPAAHLAEHGIQVLHDLPGVGQGLQDHLAAHVKYRSTKPWSMLRYLNP--LRGALAMAQYALLRRGPLADPGMSVACMVRSDPSLDEPDIKMLLVSALFAQNGREMVPMHGFYAHINVARPQSRGSVTLASADP--EVPPVIDQNYNAAQEDRRAMREGVRIARRIFAQPAFDIMRGEELAPGSGV--ESDAQIDAYI-RATAEADYHSTSTARMGRDPMAVVDDRLRVH-GVAALRVVDASVMPHLPGGNTAIPVAMIAEKAADLI 527
BLAST of NO03G05710 vs. NCBI_GenBank
Match: WP_062342596.1 (choline dehydrogenase, partial [Novosphingobium sp. CCH12-A3]) HSP 1 Score: 121.7 bits (304), Expect = 4.400e-24 Identity = 113/351 (32.19%), Postives = 155/351 (44.16%), Query Frame = 0 Query: 3 TGARVTRVLFDKNKRATGVVYTVAESGDVDSSTGINRNDPRLGSRGREAAARVTLHAHATREVVLCAGVFFTPHILLKSGVGPAAELEALGVPVVANVSGVGKHLLARTNVLFFYGNGSVVPEMNPFV-LRDPATTEMYDLEHRGPYSLGALGIYSVVKGRYPGD--DDYILFMTDVIPEVAPRMV-----ALGCANLRVHGPGGQVLLDPTDPLGAKHPRIQLNMAAAEEDRRALRHCLRDVRDMMAEPIMTTNGFYEIFPTHRLVEDTDKALDRWI-SRGYTFYSWHATSTARMGDVLDDRMRVQG------GVQGLRVVDASAVPDMIEAGPMATLFMLGERAADLIK 339 TGARV RV+ + N RA GV Y++ + V A ATREV+LCAG F +P IL SG+G L+A GV V + GVG +L +V + + N LR Y L +G L + +K R D D I F+ ++ E A + LR GQV L DP P I N AAEEDRR +R +R R++ + + EI+P + D D +D W+ +RG T Y H TA+MG DD M V G++GLRV+DAS +P +I A M+ E+ AD+I+ Sbjct: 80 TGARVHRVVVE-NGRAVGVEYSLGQGKPVS-------------------------RASATREVLLCAGAFQSPQILQLSGIGDPEALKAKGVVPVHVLKGVGANLQDHLDVTLNWACTQPISLYNEIKGLRQLKVGLQYLLTGKGTGRQNGLEAGAFLKSRPDLDRPDLQIHFVIAIMQEHAKVQAKRDGFTIHVCQLRPES-RGQVSLSSADPYA--DPAILANFLAAEEDRRVVREGIRIAREVAGQEALAPYRGEEIWPGAHVQSDAD--IDAWVRARGETIY--HPVGTAKMG-TRDDPMAVVDKDCKVMGLEGLRVIDASVMPTLIGGNTNAPTIMIAEKIADVIR 396 The following BLAST results are available for this feature:
BLAST of NO03G05710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G05710 ID=NO03G05710|Name=NO03G05710|organism=Nannochloropsis oceanica|type=gene|length=1038bpback to top protein sequence of NO03G05710.1 >NO03G05710.1-protein ID=NO03G05710.1-protein|Name=NO03G05710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bpback to top Synonyms
Publications
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