NO03G05660, NO03G05660 (gene) Nannochloropsis oceanica

Overview
NameNO03G05660
Unique NameNO03G05660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1169
Alignment locationchr3:1625395..1626563 -

Link to JBrowse

Properties
Property NameValue
DescriptionSec14 cytosolic
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1625395..1626563 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036865CRAL-TRIO_dom_sf
IPR001251CRAL-TRIO_dom
Homology
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BLAST of NO03G05660 vs. NCBI_GenBank
Match: XP_024577888.1 (sec14 cytosolic [Plasmopara halstedii] >CEG41519.1 sec14 cytosolic [Plasmopara halstedii])

HSP 1 Score: 65.5 bits (158), Expect = 4.000e-7
Identity = 38/101 (37.62%), Postives = 54/101 (53.47%), Query Frame = 0 
Query:   53 SEMLLEEEGGNFPRARKRHNATVRWRHHHRVDNIFDTGETPTPAAFAQILRIWPRWFQGRTRDGDVVMYEELGKLRGSSLREARLNPGAWSRHLALICEYV 154
            S   +  E G+  + R R+ AT++WR  + +DNI     TP P  F  I R +P++F GRTRDG  V YE  GK+   +L+   L+     RH   I EY+
Sbjct:  414 SPRFIAGEKGDEEKGRARYLATLKWRKENNIDNIL---VTPHP-NFEIIKRSYPQYFHGRTRDGHPVYYERPGKIDLPALKREGLSIDDLLRHYMYITEYL 510
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BLAST of NO03G05660 vs. NCBI_GenBank
Match: OQR98714.1 (SEC14 cytosolic factor [Achlya hypogyna])

HSP 1 Score: 65.5 bits (158), Expect = 4.000e-7
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 0 
Query:   53 SEMLLEEEGGNFPRARKRHNATVRWRHHHRVDNIFDTGETPTPAAFAQILRIWPRWFQGRTRDGDVVMYEELGKLRGSSLREARLNPGAWSRHLALICEYV 154
            S   +  E G+  + R R+ AT++WR  +RVD I    E P    F  I + +P++F GR+++G+ V YE+LGK+    L+ A LN     RH   I EY+
Sbjct:  456 SPRFVAAEKGDEAKGRARYEATLQWRRENRVDGIL-YEEQP---HFHLIKQCYPQYFHGRSKNGNCVYYEKLGKIDLKRLKGAGLNLDQLLRHYMYITEYL 552
The following BLAST results are available for this feature:
BLAST of NO03G05660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_024577888.14.000e-737.62sec14 cytosolic [Plasmopara halstedii] >CEG41519.1... [more]
OQR98714.14.000e-736.63SEC14 cytosolic factor [Achlya hypogyna][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005307NSK005307Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05660.1NO03G05660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05660.1NO03G05660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05660 ID=NO03G05660|Name=NO03G05660|organism=Nannochloropsis oceanica|type=gene|length=1169bp
ATGGCATCCAAGCCCCCAGGCCCTTCCGGCGACGCCCATTCTCCTTCCTT
CCTCGTCAAGGCTTCCTCGCCCTATATCGCCACTCCTCCCGCCATCGGCA
TCGGTATAGGCTGGGGGCGAAGCCTGTGCTATGACTCGGAAGATGACGAG
GACATTTCAGAGATGTTGCTGGAGGAGGAGGGTGGGAACTTTCCTCGAGC
ACGCAAGCGGCACAACGCGACTGTCCGTTGGCGCCACCACCACCGTGTCG
ACAACATTTTCGACACGGGAGAGACACCTACTCCAGCGGCATTTGCACAA
ATCCTCCGCATTTGGCCTCGTTGGTTTCAGGGGCGGACGCGGGATGGTGA
TGTGGTGATGTACGAGGAGCTAGGAAAGCTGCGTGGGTCAAGCCTGAGGG
AGGCTCGCTTGAATCCGGGAGCATGGTCACGGCACCTGGCCTTAATTTGC
GAGTATGTGgtgcggtgcatggaccagtcggacgaggatctctccgatgg
ctatgatcactatctttatgacgagatcagtagCCTCAGGAGGGGGGGGG
CAGCACGAAAGGAATGGAGGGCATTGAAGAGCTGAAAGAAAAAGAAGACA
CGCAAACAAAACTAAAGAAGAACCCGAGGCCGGGCCGCAACAATTGGGAC
GACGAATATGCCCAAGGCCCCCCCCGTCCACGCATCACGATCGTCTTATC
CCTTGCGGGCGTGACCTCCGCTGGCTTCTTCGCGGACTTTGCCGTTCGCA
AGGCCGTTCGTATTTGGAGCCACATTTTGCAGGCGCATTACCCAGGCCTC
GTTCATCGCATCCTCCTCGTGAATGTGCCCAGCTTTCTCTCCCCCACGGC
GCTTGCTTTCCTTCAGCCCTTGCGTCTCTTTCCTAGGCAATGGCGTAGGA
AGATCTGGTTGGTCCTTGAGGATGGTGCTGACGGCGTGGCCACGCCCTTG
GAAGACAGCCATCGAGCCCTCCTCGCCACGGCGGGTCTCTCCCCGAGCAC
CTGTGTCTTGCGCGGCATCGAGAGCGTCATAGATTCTTCGTCTTTATCTG
CGGCTGTCTTCCCGGCCTTCGGGCGTGACTTTGGCGAGAGGGCGCATGCG
GAGGAGTGGGCACCACTGCTGGGGTTCGTGAATGCTAATTCTCTACCAGA
AACAGGGAAAGAAGGATAA
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protein sequence of NO03G05660.1

>NO03G05660.1-protein ID=NO03G05660.1-protein|Name=NO03G05660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MASKPPGPSGDAHSPSFLVKASSPYIATPPAIGIGIGWGRSLCYDSEDDE
DISEMLLEEEGGNFPRARKRHNATVRWRHHHRVDNIFDTGETPTPAAFAQ
ILRIWPRWFQGRTRDGDVVMYEELGKLRGSSLREARLNPGAWSRHLALIC
EYVPQEGGGSTKGMEGIEELKEKEDTQTKLKKNPRPGRNNWDDEYAQGPP
RPRITIVLSLAGVTSAGFFADFAVRKAVRIWSHILQAHYPGLVHRILLVN
VPSFLSPTALAFLQPLRLFPRQWRRKIWLVLEDGADGVATPLEDSHRALL
ATAGLSPSTCVLRGIESVIDSSSLSAAVFPAFGRDFGERAHAEEWAPLLG
FVNANSLPETGKEG*
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Synonyms
Publications