NO03G05610, NO03G05610 (gene) Nannochloropsis oceanica

Overview
NameNO03G05610
Unique NameNO03G05610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3428
Alignment locationchr3:1608447..1611874 +

Link to JBrowse

Properties
Property NameValue
DescriptionNuclear pore localization protein NPL4
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1608447..1611874 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007717NPL4
Homology
[Close]
BLAST of NO03G05610 vs. NCBI_GenBank
Match: EWM30037.1 (Nuclear pore localization protein NPL4 [Nannochloropsis gaditana])

HSP 1 Score: 231.5 bits (589), Expect = 5.300e-57
Identity = 134/176 (76.14%), Postives = 149/176 (84.66%), Query Frame = 0 
Query:  237 QIEAMKQPPSSLPTSFGSSFLTLAVNTSAAFAAQHPVEAFQVSQQAVQMVWDGLIAEGGVEGVIKTTSDVFVSGDTRREVDTALFILPLAITPXXXXXXXXXXXXXXXVRNTLPPLKNDDDLRTALLGQSGGNRWLETREKKLLTKLADFHLLVYLAKYLRTDDLTKLCTAIVALG 413
            QIE+MK   SS P S GS+FLTLAVNTSAAF  QHPVEAFQVS Q VQMVWDGLI +GG   ++ TTSDVFVSG TRREVD ALF LPLAITP  XXXXXXXXXXXXXVRN LP LK+D+DLR ALLG+  GNRWLETR+KKLL+KLADFHLL+YL+KYLR+DDL KL +AIV+LG
Sbjct:   10 QIESMKASVSSSPPSLGSAFLTLAVNTSAAFDTQHPVEAFQVSPQGVQMVWDGLIQDGGAGALLSTTSDVFVSGKTRREVDAALFTLPLAITPDSXXXXXXXXXXXXXVRNALPALKDDEDLRAALLGRERGNRWLETRDKKLLSKLADFHLLIYLSKYLRSDDLAKLSSAIVSLG 185
[Close]
BLAST of NO03G05610 vs. NCBI_GenBank
Match: XP_005855030.1 (hypothetical protein NGA_0415200, partial [Nannochloropsis gaditana CCMP526] >EKU21328.1 hypothetical protein NGA_0415200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 188.3 bits (477), Expect = 5.100e-44
Identity = 126/210 (60.00%), Postives = 139/210 (66.19%), Query Frame = 0 
Query:  228 QEVLVTARLQIEAMKQPPSSLPTSFGSSFLTLAVNTSAAFAAQHPVEAFQVSQQAVQMVWDGLIAEGGVEGVI-----------------------------------KTT---------SDVFVSGDTRREVDTALFILPLAITPXXXXXXXXXXXXXXXVRNTLPPLKNDDDLRTALLGQSGGNRWLETREKKLLTKLADFHLLVYLA 394
            QEV++ ARLQIE+MK   SS P S GS+FLTLAVNTSAAF  QHPVEAFQVS Q VQMVWDGLI +GG  G                                      TT         +DVFVSG TRREVD ALF LPLAITP  XXXXXXXXXXXXXVRN LP LK+D+DLR ALLG+  GNRWLETR+KKLL+KLADFHLL+YL+
Sbjct:   48 QEVVIAARLQIESMKASVSSSPPSLGSAFLTLAVNTSAAFDTQHPVEAFQVSPQGVQMVWDGLIQDGGGGGFAVHDEVRGWGGREXXXXXXXXXXXXXXXXXXXXXRRLTTGERESCGDITDVFVSGKTRREVDAALFTLPLAITPDSXXXXXXXXXXXXXVRNALPALKDDEDLRAALLGRERGNRWLETRDKKLLSKLADFHLLIYLS 257
The following BLAST results are available for this feature:
BLAST of NO03G05610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM30037.15.300e-5776.14Nuclear pore localization protein NPL4 [Nannochlor... [more]
XP_005855030.15.100e-4460.00hypothetical protein NGA_0415200, partial [Nannoch... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005311NSK005311Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05610.1NO03G05610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|17068gene_1773Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100179g10gene612Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05610.1NO03G05610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05610 ID=NO03G05610|Name=NO03G05610|organism=Nannochloropsis oceanica|type=gene|length=3428bp
CAGTCCCCTTGTCTACGGCACAATCAACCCCACAGCCACGACTAGTACCA
CTTATAAAAGCTCAGCACGGCAAATACGGCGCCTGTTACGGACCGAGGTA
TCCGTAGACAGGTAAAAAAACATGACCGCCAACACGACCCCATGCCGGGG
AGGCTACGGAGGACCGCACGGACGACCACCATTACCACCGAGGAAAGGCC
AGCACGGACGCATTTTCTTGACCTCTATTCCCCTTCTCGTGGTCCTCCTT
CTTGTGCTCCTCCTCCTCTTGTCAACTGCAGAAGCTATCAAACGTGCCCC
CACACCGGCCGCCACCGGAAGCAAACCCTCCCCCACTACCTCTCCTTCCA
ACCCCCCATCCACCACCAAGAAATCGAGAGCTACATCCAAAATACTGCCG
GCCACACCGAATAGACCATCGGAAGAGACTTGCCATGCAGAGAGGTATGC
ATGAGATGGCAATTCTATTTATATTTCCAAAGGTCAAGTCTCATCCCGTG
TTACTTCACACACGTCCTCACACTCCCGGCCCTGGACCCTCCACCCTTCC
AATCTCCATGAAATAAACTACACTCCCATCAGTCAAAGCGGGGGGCTTAC
CATCAACCTCCTGAGTGACGGGCAAACACGCGTCCTCTCCCTCCCAGTCT
CCACCACCCCGCACACCCTCCGTCGTCACCTTCTGGCCCAGGGCCTCGTG
GCCACTCCACAGGCAGAAGgtacgacgcttatgtccagggttttatccat
acctctccacaaacacatctttctcccctccctgccttctttccctctct
tttactaagcaccgcattccctgtccgtaacccccacttctcatacgtac
cacagGCCTGCGACTTCGGAGGTTGAAGAAGGGAGGACGGCCAGTGACGC
AAGGTAAGAAAGAACGAGTGAGATAGGGACGAGTAAAACAATGGAATACA
TTCTATAACAATGAACTAACATGCATCATACTGATGCTTTACGGAATACA
TTCTATAACAATGAACTAACATGCATCATACTGATGCTTTACGGTTACCT
TCAGGTCTGAGTACCGCCAATGAGCTCCAAAACGGAGACACTATCCTCCT
TCCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCTCCCTCCCCCTCTT
CATCTTCCTTCTCTTCCTCCTCCTCCTCCTTCGCACCTTATCCAAAGCTT
GCCTACGTTCAGAAAAAAGGAGGGAGGGCCACGAGCTTCCGGGACATGGA
GCTCTACAAGgtagggagggagggagggagagagagagggagggctagtg
ttagtgtcagctagaagaagataattaatctatatcctctttattgcatt
cctccattgcactccttttctggaatattgcaataacctttctctctttc
ccccctctttcctcttagGTCGTGAAGCAAGACAGACCGTTCCTGACCCT
CGCCACAGTCAACCCCTCCTCCCTGTCCTCCTTCATCTCCCGCCTCTCCG
TGGGCGCCCGCCGGGTCGGACTCCTCTATGGCTGGCTCGAAGAAGAGGGA
GAGAAAGGGCTGGAGGGAGGGAAGAGGGTGGGGCACGTGGCGGCCGTGCT
TGAGGTGGAGGAGGAGTGGCAGGAGCATGGgtgagggagggagggaggga
gggagggagggagggagggagggagggagggaggaaaagcacttgtcagg
gaatgcacgctcgccattttatttttccaaaggctccatcctgcccttct
ttgtctccccgcctcccgccttaacctccccatcccctgtccacagCTCT
AACGGCCGACTGGACGACCGGGGCCTCTTCCAGCTCCACCGCCACTCCCA
CCCCTCGTCCTCCTCCCCTCCCTCCTCCTCCCACCACATCAACCCCACAT
TGGCTCGCGCTGCTCGGGTGGCGGCTGCGCTGGGCTGGTGCCCCATAGGG
TGGATTGCGGCCAGGCCAGGAGGAGGAGGGGAGGGAGGGAAGGAGGGAAC
AAAGGAGGGAGCGTTCCTGAATGGGCAAGAGGTGCTTGTGACGGCGCGTT
TGCAGgtaggtgtgtccgtctggagaagagtgggaagagagggacaggaa
gagggggaggacgcgtagaagatgtcgactactcattttctttcctattc
caccatgcgcagATTGAGGCCATGAAGCAGCCCCCTTCCTCCCTCCCGAC
CTCCTTCGGTTCCTCCTTCTTGACCTTGGCAGTGAACACGTCGGCAGCGT
TTGCGGCCCAGCATCCGGTAGAGGCCTTCCAGGTGTCGCAGCAGGCGGTG
CAGATGGTCTGGGACGGGCTAATCGCCGAGGGAGGGGTTGAAGGCGTCAT
CAAGACGACGAGgtaaggagtaagggacatgggcgagacactgcacaggc
tcgttgttcaccctcccgtcctccctccctccctccctcccttccttcct
ccactcatacagCGACGTATTTGTCTCGGGCGACACCAGGCGCGAGGTCG
ATACTGCCCTGTTCATTCTGCCCCTCGCAATCACCCCTGCATCCACCCCT
CCCTCCCTCCCTTCCTCCGCCCCTTCCTCGATTGTGCGGAACACCTTGCC
CCCGCTGAAGAACGACGACGACTTGCGGACTGCCTTGTTGGGTCAAAGCG
GCGGGAACAGgtagggggaatggagggggaagaagggaggagggaaagag
ggagggagtggaggagggaggaagagctctatgacccatcggacggaggg
agggagaatgggaggaagatcgggtgcattcttcatttcactagatcggc
cattaacataaaccaatacgcagGTGGCTGGAGACACGCGAGAAGAAGCT
TCTGACCAAGCTCGCTGACTTCCACCTCCTTGTCTACCTCGCCAAgtgcg
tacatgtcctttttttcctccctccctccctccctccctccctccctccc
tcccaccctccctccctccctccctctgactcgcgaagctttgttttccc
tccctccctctgactcgcgaagcttcgttttccctccctccctctgactc
gcgaagcttcgttttccctccctccctccttcctcccctccctctccctc
attaccagGTACCTCCGCACGGATGATCTGACCAAACTCTGCACCGCCAT
CGTCGCCCTCGGCGGAGGAGGGAAGGGGGGAGAAAGGGGAGGAGGGAAGG
GGGGAGGAAGGGGAGGAGGGAAGGGAAAGAGTTTAGGAAGTCCAACAGTC
CCACCGGCGGTACGGGCGCTCTTAGAGGCCTTGTGCGAGGAGGGGTGAAA
AATCGAGCGTGAAGAAGGAATAGGGGAGAGAAGAATCAAAGCAAAGAAAA
ATAAGCCGGTAAATCATGACGGCCATAAAGAAGGCGGCAAAACGTTCCTA
GAGAAGACAGCGACGATCACAAAAGCTG
back to top

protein sequence of NO03G05610.1

>NO03G05610.1-protein ID=NO03G05610.1-protein|Name=NO03G05610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MHHTDALRLPSGLSTANELQNGDTILLPSSSSSSSSSSSPSPSSSSFSSS
SSSFAPYPKLAYVQKKGGRATSFRDMELYKVVKQDRPFLTLATVNPSSLS
SFISRLSVGARRVGLLYGWLEEEGEKGLEGGKRVGHVAAVLEVEEEWQEH
GSNGRLDDRGLFQLHRHSHPSSSSPPSSSHHINPTLARAARVAAALGWCP
IGWIAARPGGGGEGGKEGTKEGAFLNGQEVLVTARLQIEAMKQPPSSLPT
SFGSSFLTLAVNTSAAFAAQHPVEAFQVSQQAVQMVWDGLIAEGGVEGVI
KTTSDVFVSGDTRREVDTALFILPLAITPASTPPSLPSSAPSSIVRNTLP
PLKNDDDLRTALLGQSGGNRWLETREKKLLTKLADFHLLVYLAKYLRTDD
LTKLCTAIVALGGGGKGGERGGGKGGGRGGGKGKSLGSPTVPPAVRALLE
ALCEEG*
back to top
Synonyms
Publications