NO03G05560, NO03G05560 (gene) Nannochloropsis oceanica

Overview
NameNO03G05560
Unique NameNO03G05560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1711
Alignment locationchr3:1595202..1596912 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1595202..1596912 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G05560 vs. NCBI_GenBank
Match: EWM30026.1 (hypothetical protein Naga_100346g7 [Nannochloropsis gaditana])

HSP 1 Score: 266.5 bits (680), Expect = 8.000e-68
Identity = 142/245 (57.96%), Postives = 169/245 (68.98%), Query Frame = 0 
Query:    1 MPSIYELKKTLGLKAGEVLSDGYVVKDVEATMDEKKPRELYNFKVHLWLSP-----------PSSHLPGQKRSHVMCNNLLEDAKQALLQTAEERKIMYSSYGSPYEMHLEHIRAISSGLMQQEQ---EEKGEYQKQEWQEDEDAIGLIEVHALAVAKRRRDLPRLSELEKGTSGNEEEAADDEMKRQGYRIVKAHFKSGHCPLCGNEVAPGEHIAKPKEDRSRGGWAHSTCLANCPEMPMTPTK 232
            MPSIYELKK+L LK+GEVL  G++VKDVEATMDEKKPRELYNFKVHLW+SP                    R  V+    LE A++AL+QTAEER+IMYSSYGSPYE+HLEH++A  +G  +QE+     KGE    E +      GLIE+HALAVAKRRRDLPRLS+   GTS             +G+R+VKAHFKS HCP CG+E  PGEHIAKP+++ +RGGWAHSTCLA   E P TPTK
Sbjct:    1 MPSIYELKKSLSLKSGEVLGTGFIVKDVEATMDEKKPRELYNFKVHLWVSPXXXXXXXXXXXXXXXXXXXXRRKVLDKADLEGAEKALIQTAEERQIMYSSYGSPYEVHLEHVKATPAGEGRQEKVAGTRKGEESAIEQE------GLIEIHALAVAKRRRDLPRLSDTGHGTSXXXXXXXXXXXXXRGFRVVKAHFKSSHCPECGHEFIPGEHIAKPQDEHNRGGWAHSTCLAKRLETPQTPTK 239
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BLAST of NO03G05560 vs. NCBI_GenBank
Match: EWM30027.1 (hypothetical protein Naga_100346g7 [Nannochloropsis gaditana])

HSP 1 Score: 261.9 bits (668), Expect = 2.000e-66
Identity = 142/246 (57.72%), Postives = 169/246 (68.70%), Query Frame = 0 
Query:    1 MPSIYELKKTLGLKAGEVLSDGYVVKDVE-ATMDEKKPRELYNFKVHLWLSP-----------PSSHLPGQKRSHVMCNNLLEDAKQALLQTAEERKIMYSSYGSPYEMHLEHIRAISSGLMQQEQ---EEKGEYQKQEWQEDEDAIGLIEVHALAVAKRRRDLPRLSELEKGTSGNEEEAADDEMKRQGYRIVKAHFKSGHCPLCGNEVAPGEHIAKPKEDRSRGGWAHSTCLANCPEMPMTPTK 232
            MPSIYELKK+L LK+GEVL  G++VKDVE ATMDEKKPRELYNFKVHLW+SP                    R  V+    LE A++AL+QTAEER+IMYSSYGSPYE+HLEH++A  +G  +QE+     KGE    E +      GLIE+HALAVAKRRRDLPRLS+   GTS             +G+R+VKAHFKS HCP CG+E  PGEHIAKP+++ +RGGWAHSTCLA   E P TPTK
Sbjct:    1 MPSIYELKKSLSLKSGEVLGTGFIVKDVEQATMDEKKPRELYNFKVHLWVSPXXXXXXXXXXXXXXXXXXXXRRKVLDKADLEGAEKALIQTAEERQIMYSSYGSPYEVHLEHVKATPAGEGRQEKVAGTRKGEESAIEQE------GLIEIHALAVAKRRRDLPRLSDTGHGTSXXXXXXXXXXXXXRGFRVVKAHFKSSHCPECGHEFIPGEHIAKPQDEHNRGGWAHSTCLAKRLETPQTPTK 240
[Close]
BLAST of NO03G05560 vs. NCBI_GenBank
Match: PRW59725.1 (hypothetical protein C2E21_1933 [Chlorella sorokiniana])

HSP 1 Score: 96.7 bits (239), Expect = 1.100e-16
Identity = 64/225 (28.44%), Postives = 99/225 (44.00%), Query Frame = 0 
Query:    1 MPSIYELKKTLGLKAGEVLSDGYVVKDVEATMDEKKPRELYNFKVHLWLS-PPSSHLPGQKRSHVMCNNLLEDAKQALLQTAEERKIMYSSYGSPYEMHLEHIRAISSGLMQQEQEEKGEYQKQEWQEDEDAIGLIEVHALAVAKRRRDLPRLSE---LEKGTSGNEEEAADDEMKR--QGYRIVKAHFKSGHCPLCGNEVAPGEHIAKPKEDRSRGGWAHSTCL 220
            MPS  + +K  GL   +VL   + +       + K+  E Y F   L +     S                 + + A  Q   E++I+YS+YGSPYE     +  ++                      +D     ++ AL  A RRRD+P L E    E+  +G   E ++++ +R   GYR++K+ F +  C +CG  + PG  IAK K D  RGGWAH+ CL
Sbjct:    1 MPSPSDFRKAFGLGVEQVLGGAWRITSSSFGHEVKEQNERYEFPASLEVEWTAGSXXXXXXXXXXXXXXXXXELEAAWEQQTREKRIVYSAYGSPYECFFVKLPKVT--------------------PLDDGGSSYQITALGRAVRRRDIPTLKEERAAERTAAGGAGEVSNEDERRYLSGYRVIKSRFGTSKCSICGQTIDPGVKIAKGKGDTGRGGWAHAICL 205
The following BLAST results are available for this feature:
BLAST of NO03G05560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM30026.18.000e-6857.96hypothetical protein Naga_100346g7 [Nannochloropsi... [more]
EWM30027.12.000e-6657.72hypothetical protein Naga_100346g7 [Nannochloropsi... [more]
PRW59725.11.100e-1628.44hypothetical protein C2E21_1933 [Chlorella sorokin... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05560.1NO03G05560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573391gene_1769Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100346g7gene617Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05560.1NO03G05560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05560 ID=NO03G05560|Name=NO03G05560|organism=Nannochloropsis oceanica|type=gene|length=1711bp
GGCGTTGTGGAGGGAAGGAAGCCTTACTACACGGGGGGGAGGAGAGTGCT
CGGTTTGCTTTCGCTGCATTTCCCTTGGCCTAGAGTCACATTATTGGAAA
TGGTCACAAGAAAATATAAAATGCGTGCTGGTACAGAACAGGTGCATGTG
CAGATGTATATGTCCCTTTTTGTCCCCCCCCCATCTGCTCCCCCGAACAG
AACACTGATATTCTTAACTGCAACATTCCCTCCCCACTCAACACATAGGA
AACATACCTACAGTCAAGACAATGCCGTCCATTTACGAGCTTAAGAAGAC
GCTGGGTCTCAAAGCTGGCGAGGTGCTGAGTGACGGCTATGTGGTCAAGG
ACGTCGAGgttcgttttgctgggtaggaagggcggcgtttttggtcatga
gtgtcttcaagcaaggacgacaaagagaatgacaaactggccaaaatcct
ccctaaactgtgagtaaaccgatccgtctaattcagaattttttctgtcg
gatatttcattgtctcccttacatgtccttcttacttatttttcgagggg
tggggatcacgacaagaaaaggttgtggtgaacagagctatgtgcttggg
cgacgaaattatgtgtctgtgtatacatttgagagtagaactattgacaa
gccttctcgtgctcaaagccgttccacctttcaccactctcttgcttttg
tctccctacctccttccgtctcccaacttctctgggttctcatttccccc
cctttggttgcagGCCACTATGGACGAGAAAAAGCCGCGTGAGCTCTACA
ACTTCAAGGTCCACCTCTGGCTCTCACCTCCCTCGTCACATTTGCCTGGC
CAGAAGCGTAGTCATGTTATGTGTAATAACTTGCTGGAAGACGCAAAGCA
AGCTCTTCTGCAGACGGCGGAGGAGCGGAAGATCATGTATAGTTCTTATG
GCTCTCCTTACGAGATGCACCTGGAGCACATCAGGGCTATATCCTCTGGG
CTGATGCAGCAAGAGCAGGAAGAAAAAGGGGAATACCAAAAGCAAGAGTG
GCAGGAGGACGAGGATGCGATAGGGCTGATTGAGGTGCATGCTTTGGCGG
TGGCCAAGCGCCGCAGGGACTTACCTCGTCTTTCAGAATTAGAGAAGGGA
ACGAGCGGAAATGAAGAGGAGGCGGCAGACGATGAGATGAAGCGACAGGG
ATATCGAATAGTGAAGGCACATTTTAAGTCTGGCCATTGCCCTCTTTGCG
GGAATGAGGTCGCGCCCGGTGAGCATATTGCTAAGCCCAAAGAGGACCGC
AGCCGCGGGGGATGGGCACATTCCACATGCCTCGCCAACTGCCCTGAGAT
GCCGATGACTCCCACGAAAACAATTATGGATGGAGAGGGGGCCATTACGA
ATATCAAGGAATGATAAGAATAGAGACGTGAAGGCGGGGAGAGAGGGAGA
GAGATACAAGCAAGCGGGTATGAGTGAAGTGGTTGCGAGAGATATAGTGT
AAGAGCTTCTTGAGAAGAGAATGATGAAGAGGGAGAGGAAAAACGTAAGC
AGCATAGACGAAGATTCGAAGAGTCTTGATTTTAATGCCTGTGTGTGATA
ACAGATACAGAAAAAGTGGGCGTGAGGGTATGTCAGATTGGTCTCAAAAG
AGGAATCTTTGAGACCCAAAAAATCGAGAATCCATACACGTAGAATCTCT
TTCAAATTGCC
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protein sequence of NO03G05560.1

>NO03G05560.1-protein ID=NO03G05560.1-protein|Name=NO03G05560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MPSIYELKKTLGLKAGEVLSDGYVVKDVEATMDEKKPRELYNFKVHLWLS
PPSSHLPGQKRSHVMCNNLLEDAKQALLQTAEERKIMYSSYGSPYEMHLE
HIRAISSGLMQQEQEEKGEYQKQEWQEDEDAIGLIEVHALAVAKRRRDLP
RLSELEKGTSGNEEEAADDEMKRQGYRIVKAHFKSGHCPLCGNEVAPGEH
IAKPKEDRSRGGWAHSTCLANCPEMPMTPTKTIMDGEGAITNIKE*
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Synonyms
Publications