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Properties
| Property Name | Value |
|---|
| Description | Unknown protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr3 | genome | chr3:1587797..1595053 + |
Analyses
This gene is derived from or has results from the following analyses
Homology
BLAST of NO03G05540 vs. NCBI_GenBank
Match: EWM30024.1 (hypothetical protein Naga_100346g2 [Nannochloropsis gaditana]) HSP 1 Score: 182.2 bits (461), Expect = 4.500e-42 Identity = 114/234 (48.72%), Postives = 139/234 (59.40%), Query Frame = 0
Query: 53 QSRNESSLTAGRVLSASSFVMEKGRGDKNEAGVGGAGKARGGIPRLGQSPNAEDDAALVRLLAGLQREADYLTNRHSTSSSSSSSCGDSPFITPVGSHHFQGAHLEALEALLESNEGTDIELHPSFRPSSSSSXXXXXXXXXXXXXXXPPLTLHSKITRHGTRIFRPKTRVQVPWSYPVTHALATFLYTGRLVVSTAHLADTYRAAQEAGVRSLAYLLRTHPFYALRLTSAEKA 287
QS+ S + R+LSAS M G+ G + R +P LG N DDA LV +AGLQREAD L + + ++ SP S + HL ALE+LLES +G D+ELHP+ PS S PPL LH++I RH +RIFRP R+QVPWS PVTHALATF+YTGRL +STA LAD Y AA+EAG R L YLLRT+P+YALRLTS EKA
Sbjct: 58 QSQTPSEMAGERILSASGRWM--GKEKHPTWGENEIDRDREELPLLGMPTNETDDATLVAFMAGLQREADTLNDTRDPTLWKPAA-RSSP-----SSQRRRSYHLHALESLLESGQGADVELHPAVPPSFSPE-----AVSTSALAFPPPLALHARILRHASRIFRPHARLQVPWSAPVTHALATFMYTGRLTLSTALLADVYLAAREAGARPLLYLLRTYPYYALRLTSGEKA 278
BLAST of NO03G05540 vs. NCBI_GenBank
Match: EWM30029.1 (hypothetical protein Naga_100346g3 [Nannochloropsis gaditana]) HSP 1 Score: 149.8 bits (377), Expect = 2.500e-32 Identity = 92/186 (49.46%), Postives = 113/186 (60.75%), Query Frame = 0
Query: 287 SHVRRFAVVSGNERLSALCDAYTRRLASHKTTYTLVAPVPFAWLRARPLLIGDKSLLLAFSHRPSPVHETSSNIVLSIQDH----LPSSSPPSSLPLSLCHNTCLRLDKDPSTPWSPTWFAASSPLPPSPSPACMEGDKNGLVWLYVLCSQAHAPVVLKALLREL-SVSKALCDAEPQAGV--EGG 466
SH+ FA V+G+E L L Y R+A H + L+ VP AWL+AR L G K ++LAF HRPSP+HE+SSN+VLS DH LPSS PPS P L HN C RLD++ WS + ++S PP PS DK G VWLY + Q APV+LKALLREL S S+AL +AG EGG
Sbjct: 72 SHLLGFARVAGDEELEVLAQDYLHRMAGHHASSLLITYVPLAWLQARSLRTGAKGIVLAFRHRPSPIHESSSNLVLSAHDHLLSCLPSSLPPSHRPF-LRHNACYRLDQEFHPLWSSSSHSSSCTHPPLPSSL---ADKEGNVWLYAMTPQKDAPVLLKALLRELSSASRALLKPPSKAGSGREGG 253
BLAST of NO03G05540 vs. NCBI_GenBank
Match: XP_005853885.1 (hypothetical protein NGA_0429600 [Nannochloropsis gaditana CCMP526] >EKU22473.1 hypothetical protein NGA_0429600 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 108.6 bits (270), Expect = 6.300e-20 Identity = 69/131 (52.67%), Postives = 83/131 (63.36%), Query Frame = 0
Query: 342 LLLAFSHRPSPVHETSSNIVLSIQDH----LPSSSPPSSLPLSLCHNTCLRLDKDPSTPWSPTWFAASSPLPPSPSPACMEGDKNGLVWLYVLCSQAHAPVVLKALLREL-SVSKALCDAEPQAGV--EGG 466
++LAF HRPSP+HE+SSN+VLS DH LPSS PPS P L HN C RLD++ WS + ++S PP PS DK G VWLY + SQ APV+LKALLREL S S+AL +AG EGG
Sbjct: 5 IVLAFRHRPSPIHESSSNLVLSAHDHLLSCLPSSLPPSHRPF-LRHNACYRLDQEFHPLWSSSSHSSSCTRPPLPSSL---ADKEGNVWLYAMTSQKDAPVLLKALLRELGSASRALLKPPSKAGSGREGG 131
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G05540 ID=NO03G05540|Name=NO03G05540|organism=Nannochloropsis oceanica|type=gene|length=7257bp
CTCATGAAAAGAAGCAGAGCAGAGCGGGGAATTTCAGTTCAACAAAAAGC
AAAAGCAAAAACCCCACCAGCAGTCGGCCTGCTTTGAGTTCGACTTGAAA
GATGCTCCGCAGTGCAGCATTGATGCTTAAGTGCGGTGATGCATGCCTTG
GTGACATGATTGTGGCTGTGGCCCGTCCAACATGTAATCATCTACAGCCG
CAAGCCTATCTCCTTTTCAATTCGCTCCAGTGGGCGCCTGCAAACCAGTT
TGTCAGGAAACCAATCAACAGCGGTATAGGACAGCAACACACACACACAT
AAACGTATATTTTATATTCACAGTGCCCGAGGGCAAGGGGATACATTTTT
CCTCAGGACCTAGCTGGCTGGGTGGTCGGCATTGGCTCTGGTTGAACACA
CACGCACGCATTATTCCATCTCTTTACTTTGATTCGTTCGTTCATCTTCC
CACCATTCCTGTCCAAAGTAGTCCATTAGGTACTAATTCCATGCACGCGG
GTCGCATCCTTTCCATCTCTGTGCCCAATGGTAGTAGCGTGCCGGACGTC
TCCTTTTCCTTCCATCATCAACGGCAGCAGCAGCAACAGCAACAGCAACA
ACAGGAAAGCCGGGCGGAGGAGCAGGAGGAGACAGTGCGATGCCACCAAA
GCCGAAATGAGTCCTCGTTGACGGCTGGGAGGGTATTGTCCGCTTCCTCT
TTCGTGATGGAAAAGGGGCGGGGTGACAAGAATGAAGCAGGAGTAGGTGG
GGCAGGGAAGGCAAGGGGAGGGATACCTCGCTTGGGACAGTCACCCAATG
CCGAAGATGATGCGGCACTTGTTCGTCTCCTCGCAGGGCTTCAAAGGGAG
GCTGATTACCTCACAAACAGGCACAGTACTAGCAGCAGTAGCAGCAGCAG
CTGTGGTGATAGCCCTTTCATCACACCAGTGGGATCCCACCACTTCCAAG
GCGCCCATCTGGAAGCCTTGGAAGCCCTCCTTGAGTCCAATGAAGGCACC
GACATCGAACTCCACCCCTCCTTCCGCCCTTCCTCGTCCTCTTCCTTCAC
TCCCTCCTCCTATCCCTCCTCCTCCACCACCGTCTTCCCCCCCCCATTGA
CCCTCCATTCCAAAATCACCCGTCACGGAACCCGCATCTTTCGACCCAAA
ACCCGAGTCCAGGTTCCCTGGTCCTACCCCGTCACACATGCCCTCGCCAC
CTTCCTCTATACGGGCCGCCTCGTCGTCTCCACTGCCCACCTGGCCGACA
CCTACCGCGCCGCGCAAGAGGCCGGGGTACGGTCTTTGGCCTACCTCCTA
CGCACGCATCCTTTCTACGCCTTGCGCTTGACGAGTGCCGAAAAAGCGAG
gtgaggatggagagggaaagaggcggaggggaaggaggagacatcggtcg
tgtgtattaaagtgtgtgtatgtgcttaagcatgcatcttggatttcttt
aatacgtcctctaactccctccccgtcccttccctcgatccctccctccc
tcgatccctccctcgatccctccccctctccctccagCCACGTTCGCCGC
TTCGCCGTAGTTTCCGGGAACGAAAGGCTCAGTGCCCTCTGCGATGCTTA
CACGCGCCGGCTGGCCTCCCATAAAACCACATACACGCTGGTGGCCCCTG
TGCCTTTTGCCTGGCTTCGGGCCCGCCCGCTTTTGATAGGGGACAAGgtc
agggaaggagggagggagggagggagggagggagggagggagggagggag
ggtggttcttgttaccgtgctgtaaacaagcgcatcgttattgattcatc
ctcccctcccttccctccctcctaccgccagTCCCTCCTCCTCGCATTCA
GCCACCGCCCTTCCCCCGTCCACGAAACGTCCAGCAATATCGTCCTCTCC
ATACAAGATCACCTCCCCTCTTCCTCGCCCCCCTCCTCCCTCCCGCTTTC
TCTTTGTCACAACACCTGCCTCCGCCTCGACAAGGACCCTTCCACCCCCT
GGTCCCCGACCTGGTTCGCCGCCTCGTCTCCTCTCCCTCCCTCCCCCTCA
CCCGCCTGTATGGAGGGTGACAAAAACGGACTTGTGTGGCTTTACGTCTT
ATGCTCTCAGGCACATGCACCGGTCGTGCTCAAGGCGCTCCTCAGgtagg
ggaaaggaggggatgagggagggagggaggaaagagatagactgagggag
acttaattaatccatgagaggggagaagaaagcgaacagcctagctacat
gtctgtacgtatgtgtacttattcatgcatgtcttaacagGGAGCTTAGC
GTGTCCAAGGCACTGTGCGACGCCGAGCCCCAGGCAGGGGTTGAGGGAGG
GAGGGAGGAAGCGGTAGAGGGAGGAGGAGGGGAGCGATCAGATTCAGTCT
CGTCCACGGCATCGAGCGAGTCGTCTTTGGCTTCCTTCTCCTCCTACTCC
TCCTCCTCTTCCGTTAGCAGTGAGGAAGGGGGAGAAGAAGATGGGGGGGG
GAAGGGAACAATGATGAAGAGGGAATGGAGGCGGGGCAGGAGGAGGAAAA
AGACGGGATGCAGGCGGCGGGAAATGAGATCGAGATGGAGGAGGGAGGGA
GGAAGAGGGGGAAAGTGCGAGTGAAGAGTAGTCGAGGGATTATCTACAGC
ATTCGTTTTGAAGAGCACAAAGTGTCCTCCCTCCCTTCTTCCTCCTCGCC
GCATCACCGTCGTCATCACCACCACCACCACCACCACCACCACCACCACC
TCAACAACAATAACAACAATATCAACAAGAAGAAGAACAGTTTCAAGGTT
CTCTCGCTTTGGGCTTGGGGCGCTGCAACGAAGAAGGACGGAACGGATTA
TGAAGACGAGGAAGGGAAGGAGGACGGGGAGGAAGAAGTCTTTGCTACCT
TGGAAGCTTACATGCCGCAGATGCCAGTGGATACGTTTTCCTCCTCCTCT
ACCACCACCATCAAAGCCACCCTCCGCGTTGTGGATCCCCCTCTGCCCCT
CCTGGCCCACGTGCTGGCCGGGACAGATGCTGTGTCTGTCGACTGGGAGg
tgaggagggagggagggagggagggagggaggaaagggtgcagagtttat
cgatttgagcttattgacggggagatactgacatacaccaacatctacaa
ataaacacagGGAAATGCTCTCCTCCTCCCCCACCTGCCGCTGCCGACCC
TTGAGGTCCTCCTCGTCCGCTTTCTCCTGCTGTCCTATTCCTCCCCCTCC
TCTTCCTTATCCCTCTCTGTTTCCCTCCTCGAAAGGCATAAAAACAATTC
AATTTCCAACGAGGATGAAAAAGGAGGGCTGGAGCAAGGAAATACCGGTG
TGACCGGCCTTCTCCATCCCTCCCTCACCCTTGAACCGGAGGACGCCGAG
GGGGAAATGGCCTTCTCCTTCAACAGGAGCAAGACTTCGAGATCCCGCTT
GGAGAACAATCTAATTGAGGGAGGAAGAGAGGGCGGAGAGGAGGAGAGGA
ATAATTATTATAGTCGTCATTGGCACCATATTCCTGCGCGGGAGATGAAA
CGGTTGGTGCATGTGAAGGGGTGGGGAGGAGGGGGAGGGCGGGCTTAGGG
ATCGCCTAGGAAGGAGGGGATATGGATATTTTTACATCAGAAGTCTGAAA
TAGTGCGCGAAGAGTGGAGGAATCAAAAAGCGGGAAATGGCTGAAAAGCT
TCGTAGACTCGTGGAAAAGAAGGAAGGAGTTAAGGTGATGGATGATGCTT
AGAAATGAGAGAGGTGCCTTGGGAAGACACCTTATGAAAAAGCAAACTCA
CGTGAATGGCAAGAAAGATACATAGATAGACAACTGATATGATAAGAAAT
CGATTCTTCATCACTTAGATTTAAATCAGGCATCTAGAGGAAAGGGGGTA
GAGATAAACCATTCACTTTTCGTTTTGACGTGGGTTTTTGAGCGTTCTCC
GGGAAGAGTAGGGGAGTGAAGAGGAAGCCACTTGCACTTTCTGTACCACC
AACAGTGAAAACAAGTCAATAGGGACTGACGGGAATCGGGAGAATTTTGA
AATTTCTGACCATCCATATATTGACTGAGATCCCTTTTATATGAGGGGTG
AAAGAGAAAAGAGCGATTTTTGATTGGGCCTCAAACTATCTCAAACGCCC
CACTGCAAATAGGGACAAGGCCGTATCCGTTTGCGATGGTTTATGAGAGC
CGATTTTGAAGTGATCTAAATTAAGTGCTCCGTAGCGGGCTTTTTGACAT
TTCCAGTATCAACTTACCAAAAAAAGAAAATTAACAATTGATCGTTTACA
TATTCCCGTGGCTTTTCTTTTTTTTCCAGGTCTTGTCTTGACTCCTCAAT
TTGCAAATGTCCACTTGCTTGGCATCTTGCAAGCCAACTGAGTTTCTGAC
CAGACATGCTCATATATTGTCTCTCCGAAAACTCATAAGCACAACATCAA
TGAACACACAACTGAACCTTTCCCGTGTTGACTTTACCTGCTCAACAGAA
TACCCCCGCTGATATCGTCCTGAGGAAGTGTGTCACTTCTTCTTATGTCG
CCTACTGTTGGATTAGCGAAACATGAATTCCATATTACTTTCTCACAACA
CGTCTTTCTCATTATTGCGTCCACAGGTCTAATATCTCAGCTACTCTGAT
GCTTTTTGTGTATCAACTGCGGTGTTTTCCGTGTAAGCCTATATGCGGCT
TTTATTGAATCTCTGGTGTTGTGTACGTACTTTCCTGGTTAATTTCTTTT
GTATCACATGCTTCATAACTTACTTCTCCCACTGAGTCGTGGCCCAGATT
CGAGACAAGGCTGGCGCATAGTTTACCCCATCCTTCAATAGCACTACCTT
GACAAAAATCTAATGGTATTCAACGTCTTACTACCTTTCCGGATCTAGTA
CATTGTTAACCAATGTTATCATTACGTGTCGACCATTGTTGGTCATGGCA
AGAAAGCCTTACTAATTTAAAATCCTGAAATCAATTACTGTTAATTATGG
CTCCCTTCGTCTTCCTCTATTTTCTTTTCCTCCTCCGTATTGAGCGCTTG
TCGTTGCAACAATTCCCGCACCGTCCATGGTCCATTCTCTTCCTTTCGCA
GCATTGTGCTCTTCCCAGCTCCCTCACCCTTGCCCAGCAACGCCGCCACA
TGTCCCGCCGTCTCAACCAAAGGCAAAGCTACCCGGACACTAAATTTCTC
CCATAGACCAAGGGCACACAGCGTCTTTTGGTCCAGCGATGTGGTAGCCA
GCACTACCCCCACTCGGGACATTTTTGCAGGGGTACGACCGAGGACTGCA
AGGAGGCTATGAAGACGTGGCAAAGAAACTCGACCGCCTTGTAGCGGCAC
GTACTGCGAAAGGCCCTCCAAGTCGTCCAGCATCAGCAGGGAATGTGGGC
ATTGGTGCGCATCCTGTACAGCTTGGGCTAGTGTGTCGCATGCGGCTTCT
TCTCCCAAGCTCGCAAGTTCTTGCCCCGTGAGATGTCGACGAAAGGTAAA
CCCGCCGGCCAAGGAGCCAAGGTGAGCAAGCACAGCCGACTTCCCTGCGC
CGGGAGGGCCTTGAAGAAGAATCGTCACAAGGGGCAGCTGGCCACCGTTA
CGAGCTTGATCGAGGGTAGTTAGTAGGCCCTGGACGAGGGTCGGTACCTC
GGGGCGGAAGGCCACAAACCCCATGCGTTGGTGCGTGGCCCACTGCTGGC
TCGCAGCGCCAAAGTGGGGCTTTGCTTCGCGGAGCGCCCGCAGCAAGTCA
AGCATACACAAGTTCAATTTCGACGATGATAAGTCGCTTTTAATTACATC
AGCATCCAGCACATCATGCTTACGACTGACCTGTCGCTGTAAGGCAAAAG
ACAAGCCTCCCTTGACGACGCCCTCGATCTCCGCGCCAGTAAAATTAGGC
GTCAATCGTGCGAGCTGGTGGAAGTCTACGTCGGCGGACAAGCAACCCTC
GTTGGCAAAACCCCGGGTATGAATATGAAATATCTGTGCCCGGCCTGCTT
CGTCGGGTAGACCAACCTCCACATGGACCTCAAGACGGCCTGGGCGTAAG
AGTGCGTCATCCAGGAGGTCTTTCCGGTTGGTGGTGCCGATGCACAATAT
GTTGTCAAAGGCCGCCAACCCGTCGATCTTGGAAAGAAGCTGGTTAACGC
AGCTGTCCAGAACTCCCGACGAATCCCGCAGCGTCCCCCGCTTTCGCGTC
AAGGCGTCTATCTCGTCAAATATGATTACGTGCAAGGCCGAGGCGCTGCC
TTTCTCCTTGAATTCTTGTTCAGCGTCCTGGAAAATGGCCCGGATATTCT
CTTCGCTCTTACCCACCCACATGGACAGAAGCTCTGGCCCAGAAATGAGT
TTAGGTTTAGCAGCATGCAGTAATGCGGCGAGTTGACGTGCCACGAGCGT
CTTACCCGTGCCTGGTGGCCCGTGTAACAAAATGCCCCGGACGTGCTTGA
CGCCAAGTCGCTTGGCCATGTCCGGAGACAGGAGGCGCGATGCCAAGGCC
CGGCGCAGCAAGGTTATAACGGGGCCATCCAGGCCACCAATGTCCAGCTG
ATGTAGGAGTGCAGATGTGTTCTTGGAGGCAGAGTTGGTAGTGATTGCGG
CTTCGGTATCCTCACCTTCATTCATGAGAAGCTCGCGCAGGAGGGCCAGG
GATGTGTTCGGTGTCGGAGAAGTGGGAGTTTGGGGAGCTTGGGGTGTACG
AGCCATGGCATGTTTGCCGCGTGCCATGATTATTCGATAGAGAAAGTTTG
CTGTGCTGGTATCAGTGTGTGGGGGAAGAGGGTAAGGGCGTCGTCGAATA
AGGAGGAGGTTGTGGGAGTGATGAAAGCGCTTCGTGCAGAAGATCGAGAA
CAATGCAAGATGGAAAGTGCAAGAGAGAAGTATCTTGTGTGTTGTTGACA
ATGCCTGCATTAAATACATGCACGAGGCTTCTTAGATGGAGGAAAGTGGG
GCGCGTACATCGTCGCCGGAAAAGTGAGGTTGAGACAGAGGCGTTTGGTA
CGAGGGAGGAGAAAGGGGTGATGATGGTTGGATTATCGTGCTGCAATATT
ATTTCTTAATAGGTTTAACACCAACCAGGACATTGAATTAAAATGCAGGA
GACTTGACGCTAAGGGAGCCAAGAAACTCGCACCGAACAAAACGCCGCCG
GACAAGAGGCAAACGTAAAGCGTATGCTCTTCTGCTGCTGCTAAATTGCA
TGGATGATTCAGTGAAAGAGCGTGGACAGAGGGTTGAAAATGCTGTCAAG
GCCCAAG back to topprotein sequence of NO03G05540.1 >NO03G05540.1-protein ID=NO03G05540.1-protein|Name=NO03G05540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MHAGRILSISVPNGSSVPDVSFSFHHQRQQQQQQQQQQESRAEEQEETVR
CHQSRNESSLTAGRVLSASSFVMEKGRGDKNEAGVGGAGKARGGIPRLGQ
SPNAEDDAALVRLLAGLQREADYLTNRHSTSSSSSSSCGDSPFITPVGSH
HFQGAHLEALEALLESNEGTDIELHPSFRPSSSSSFTPSSYPSSSTTVFP
PPLTLHSKITRHGTRIFRPKTRVQVPWSYPVTHALATFLYTGRLVVSTAH
LADTYRAAQEAGVRSLAYLLRTHPFYALRLTSAEKASHVRRFAVVSGNER
LSALCDAYTRRLASHKTTYTLVAPVPFAWLRARPLLIGDKSLLLAFSHRP
SPVHETSSNIVLSIQDHLPSSSPPSSLPLSLCHNTCLRLDKDPSTPWSPT
WFAASSPLPPSPSPACMEGDKNGLVWLYVLCSQAHAPVVLKALLRELSVS
KALCDAEPQAGVEGGREEAVEGGGGERSDSVSSTASSESSLASFSSYSSS
SSVSSEEGGEEDGGGKGTMMKREWRRGRRRKKTGCRRREMRSRWRREGGR
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