NO03G05520, NO03G05520 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G05520 vs. NCBI_GenBank
Match: EWM30021.1 (hypothetical protein Naga_100391g1 [Nannochloropsis gaditana]) HSP 1 Score: 122.5 bits (306), Expect = 2.400e-24 Identity = 87/214 (40.65%), Postives = 103/214 (48.13%), Query Frame = 0 Query: 1 MPSIPLPTLSKK--DGREYAAFDGGETNPHPPTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIESADLSTCPADTHGRHALSIGGGE----------NPFWRIGGA--------DEGLDRGRDGGR-GRGCCWRMTRLQVFFVAVFGTCNLFLIADALGERRVLAWLEGMLINAHPHTTSVTTGLLLCLGFVLVFLGFPTTLLAVLAG 194 MPS+PLP LS K REY AFDGGE N P T +A ST HG A + G GE P W GA +EGLDR R G + GRGCC RMT Q+ ++ V + I+DALG RRVL WLEG+L++ HP T +TT LLL LG V+V LGFPTT LA+L G Sbjct: 1 MPSLPLPALSIKGAKAREYKAFDGGEHNSLPSTFSD---------------------------------PTASASTHANVGHGDPASTGGVGEAYPTACASAHRPSWGPQGARHSSFGIGNEGLDRSRRGDQEGRGCCRRMTSFQISYLVVMLASMFYFISDALGSRRVLLWLEGILVSTHPQTAGMTTALLLSLGSVMVALGFPTTFLALLGG 181
BLAST of NO03G05520 vs. NCBI_GenBank
Match: EWM30022.1 (SNARE associated Golgi protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 94.0 bits (232), Expect = 9.200e-16 Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 0 Query: 244 ALDAVLAQNGLRFNLLLRLCPFLPFSLLNVGLGLTAIRTDDFALGTVVGMLPSVILLAYLGGAEGG 310 ALDAVL + GLR NLLLRLCP +P+S LN +GLTA R++DF LG +VGMLP+VILLAY+G AEGG Sbjct: 35 ALDAVLGEQGLRLNLLLRLCPVVPYSFLNFAMGLTAARSEDFLLGCLVGMLPAVILLAYVGVAEGG 100
BLAST of NO03G05520 vs. NCBI_GenBank
Match: OLE39612.1 (hypothetical protein AUI36_25700, partial [Cyanobacteria bacterium 13_1_40CM_2_61_4]) HSP 1 Score: 79.3 bits (194), Expect = 2.300e-11 Identity = 53/136 (38.97%), Postives = 80/136 (58.82%), Query Frame = 0 Query: 170 LLLCLGFVLVFLGF-PTTLLAVLAGTLLSGPLPLLVASLVVTLTSSLGCCLAFLVTRAILRDVASEVLYSHPRLAALDAVLAQNGLRFNLLLRLCPFLPFSLLNVGLGLTAIRTDDFALGTVVGMLPSVILLAYLG 305 L L +VL + F P ++L + AG + + S +V + +++G LAFL+ R + R+ + + +PR AA+D +AQ GLR LL RL P PF++LN GLT +R D+ LG++VGMLP I+ YLG Sbjct: 22 LAFALAYVLATVLFLPGSILTLGAGFVYG----VAAGSALVWVAANVGAALAFLLGRTLAREWIAARVARNPRFAAIDRAVAQQGLRIVLLTRLSPVFPFNVLNYAFGLTRVRLRDYVLGSLVGMLPGTIMYVYLG 153
BLAST of NO03G05520 vs. NCBI_GenBank
Match: WP_008668711.1 (TVP38/TMEM64 family protein [Rhodopirellula europaea] >EMI25633.1 membrane protein containing SNARE domain protein [Rhodopirellula europaea SH398]) HSP 1 Score: 77.8 bits (190), Expect = 6.800e-11 Identity = 56/153 (36.60%), Postives = 84/153 (54.90%), Query Frame = 0 Query: 170 LLLCLGFVLVFLGFPTTLLAVLAGTLLSGPLPLLVASLVVTLTSSLGCCLAFLVTRAILRDVASEVLYSHPRLAALDAVLAQNGLRFNLLLRLCPFLPFSLLNVGLGLTAIRTDDFALGTVVGMLPSVILLAYL----GGAEGGEREGWKGQW 319 +L+ L V L P T+L + AG + L+V ++VV++ S++G LAFL++R + RD +E+ + R AA+D + + G + LLRL P LPF+L N GLT IR + L + + MLP L YL G A G +RE +W Sbjct: 56 VLVLLYIVATVLFVPGTILTLAAGAIFG----LVVGTMVVSIGSTVGAALAFLISRYVARDKVAELAKDNRRFAAIDRAIEEGGWKIVGLLRLSPALPFNLQNYLYGLTPIRFWPYVLTSWLAMLPGTFLYVYLGHLTGAAVGADRERTTAEW 204
BLAST of NO03G05520 vs. NCBI_GenBank
Match: WP_090015439.1 (DedA family protein [Lentzea violacea] >SDN25911.1 Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain [Lentzea violacea]) HSP 1 Score: 77.8 bits (190), Expect = 6.800e-11 Identity = 62/169 (36.69%), Postives = 89/169 (52.66%), Query Frame = 0 Query: 138 LIADALGERRVLAWLEGMLINAHPHTTSVTTGLLLCLGFVLVFLGFPTTLLAVLAGTLLSGPLPLLVASLVVTLTSSLGCCLAFLVTRAILRDVASEVLYSHPRLAALDAVLAQNGLRFNLLLRLCPFLPFSLLNVGLGLTAIRTDDFALGTVVGMLPSVILLAYLGGA 307 L+ D GE V +W G + LLC G VF FP +LA +G LL G LP + + + + G ++F + R + R+ + L S RL LD V A+NGL L+LRL P +PF+ N G G+TA+R FALGT +G++P+ ++ A LG A Sbjct: 21 LVVDLPGEHEVRSWTRG------AGAWAPAAFALLCAGGTAVF--FPKPVLATASG-LLFGVLP---GAALAIIGFTAGALISFGIGRLLGREAVARWLGS-SRLRTLDEVFAKNGLAATLVLRLLPVIPFAASNYGAGVTAVRPVLFALGTALGLVPTTLVAALLGDA 176
BLAST of NO03G05520 vs. NCBI_GenBank
Match: WP_007329708.1 (DUF547 domain-containing protein [Rhodopirellula baltica] >EGF24246.1 membrane protein containing SNARE domain [Rhodopirellula baltica WH47]) HSP 1 Score: 77.4 bits (189), Expect = 8.900e-11 Identity = 56/153 (36.60%), Postives = 85/153 (55.56%), Query Frame = 0 Query: 170 LLLCLGFVLVFLGFPTTLLAVLAGTLLSGPLPLLVASLVVTLTSSLGCCLAFLVTRAILRDVASEVLYSHPRLAALDAVLAQNGLRFNLLLRLCPFLPFSLLNVGLGLTAIRTDDFALGTVVGMLPSVILLAYL----GGAEGGEREGWKGQW 319 +L+ L V L P T+L + AG + LLV + VV++ S++G LAFL++R + R+ +++ + R AA+D + + G + LLRL P LPF+L N GLT IR +AL + + MLP+ L YL G A G +RE +W Sbjct: 56 VLVLLYIVATVLFVPGTILTLAAGAIFG----LLVGTXVVSIGSTIGAALAFLISRYVARERVAKLAKDNRRFAAIDRAIEEGGWKIVGLLRLSPALPFNLQNYLYGLTPIRFWPYALTSWIAMLPATFLYVYLGHVTGAAVGADRERTTAEW 204
BLAST of NO03G05520 vs. NCBI_GenBank
Match: WP_007330309.1 (DUF547 domain-containing protein [Rhodopirellula baltica] >EKK04407.1 membrane protein containing SNARE domain protein [Rhodopirellula baltica SH28]) HSP 1 Score: 77.4 bits (189), Expect = 8.900e-11 Identity = 56/153 (36.60%), Postives = 84/153 (54.90%), Query Frame = 0 Query: 170 LLLCLGFVLVFLGFPTTLLAVLAGTLLSGPLPLLVASLVVTLTSSLGCCLAFLVTRAILRDVASEVLYSHPRLAALDAVLAQNGLRFNLLLRLCPFLPFSLLNVGLGLTAIRTDDFALGTVVGMLPSVILLAYL----GGAEGGEREGWKGQW 319 +L+ L V L P T+L + AG + LLV ++VV++ S++G LAFL++R + R +E+ + R AA+D + + G + LLRL P LPF+L N GLT IR + L + + MLP+ L YL G A G +RE +W Sbjct: 56 VLVLLYIVATVLFVPGTILTLAAGAIFG----LLVGTIVVSIGSTIGAALAFLISRYVARGRVAELAKDNRRFAAIDRAIEEGGWKIVGLLRLSPALPFNLQNYLYGLTPIRFWPYVLTSWIAMLPATFLYVYLGHVTGAAVGADRERTTAEW 204
BLAST of NO03G05520 vs. NCBI_GenBank
Match: WP_084609798.1 (TVP38/TMEM64 family protein [Archangium violaceum]) HSP 1 Score: 77.4 bits (189), Expect = 8.900e-11 Identity = 69/200 (34.50%), Postives = 99/200 (49.50%), Query Frame = 0 Query: 122 RLQVFFVAVFGTCNLFLIADALGERRVLAWLEGML--INAHPHTTSVTTGLLLCLGFVLVFLGFPTTLLAVLAGTLLSGPLPLLVASLVVTLTSSLGCCLAFLVTRAILRDVASEVLYSHPRLAALDAVLAQNGLRFNLLLRLCPFLPFSLLNVGLGLTAIRTDDFALGTVVGMLPSVILLAYLGGAEGGEREGWKGQWP 320 R+ + VAV G L L L V WL G++ I T +V L + + V L P T L + AG + GP + +L+V + S+L +FL+ R +LR+ + L PR A+D +A G R LLLRL P PFS LN L LT +R D+A T +G+LP+ +L YLG + +G+ P Sbjct: 4 RIGRWAVAVSGVLALVLAITLL---PVDTWLLGLVERIRGMGLTGAV---LYVAVYAVATMLMVPATALNLGAG-FVYGP---VYGTLLVVVASNLSSLASFLLGRTVLRERVARRLAGQPRFTAVDTAVAARGFRVVLLLRLSPIFPFSFLNYSLSLTRVRLRDYAPATTLGLLPATMLYVYLGSLVTSAAQLSQGERP 193
BLAST of NO03G05520 vs. NCBI_GenBank
Match: WP_015176428.1 (TVP38/TMEM64 family protein [Oscillatoria nigro-viridis] >AFZ07141.1 SNARE associated Golgi family protein [Oscillatoria nigro-viridis PCC 7112]) HSP 1 Score: 77.0 bits (188), Expect = 1.200e-10 Identity = 42/103 (40.78%), Postives = 58/103 (56.31%), Query Frame = 0 Query: 206 SLVVTLTSSLGCCLAFLVTRAILRDVASEVLYSHPRLAALDAVLAQNGLRFNLLLRLCPFLPFSLLNVGLGLTAIRTDDFALGTVVGMLPSVILLAYLGGAEG 309 S+ V S LG AF + R + RD + + SHP+ ALD ++Q GL+ L RLCP PF+LLN LG+T + D+ LG+ GM+P I+ Y G G Sbjct: 92 SVYVFAASILGAVFAFAIGRYLCRDRVVKYMESHPKFKALDRAVSQQGLKIVFLTRLCPLFPFNLLNYALGITQVSLKDYVLGS-FGMIPGTIMYVYSGSLVG 193
BLAST of NO03G05520 vs. NCBI_GenBank
Match: WP_011123135.1 (DUF547 domain-containing protein [Rhodopirellula baltica] >NP_869843.1 hypothetical protein RB11207 [Rhodopirellula baltica SH 1] >CAD78986.1 conserved hypothetical protein [Rhodopirellula baltica SH 1]) HSP 1 Score: 77.0 bits (188), Expect = 1.200e-10 Identity = 55/153 (35.95%), Postives = 85/153 (55.56%), Query Frame = 0 Query: 170 LLLCLGFVLVFLGFPTTLLAVLAGTLLSGPLPLLVASLVVTLTSSLGCCLAFLVTRAILRDVASEVLYSHPRLAALDAVLAQNGLRFNLLLRLCPFLPFSLLNVGLGLTAIRTDDFALGTVVGMLPSVILLAYL----GGAEGGEREGWKGQW 319 +L+ L V L P T+L + AG + LLV ++VV++ S++G LAFL++R + R+ +++ + R AA+D + + G + LLRL P LPF+L N GLT IR + L + + MLP+ L YL G A G +RE +W Sbjct: 56 VLVLLYIVATVLFVPGTILTLAAGAIFG----LLVGTIVVSIGSTIGAALAFLISRYVARERVAKLAKDNRRFAAIDRAIEEGGWKIVGLLRLSPALPFNLQNYLYGLTPIRFWPYVLTSWIAMLPATFLYVYLGHVTGAAVGADRERTTAEW 204 The following BLAST results are available for this feature:
BLAST of NO03G05520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G05520 ID=NO03G05520|Name=NO03G05520|organism=Nannochloropsis oceanica|type=gene|length=2442bpback to top protein sequence of NO03G05520.1 >NO03G05520.1-protein ID=NO03G05520.1-protein|Name=NO03G05520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=321bpback to top protein sequence of NO03G05520.2 >NO03G05520.2-protein ID=NO03G05520.2-protein|Name=NO03G05520.2|organism=Nannochloropsis oceanica|type=polypeptide|length=325bpback to top Synonyms
Publications
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