NO03G05410, NO03G05410 (gene) Nannochloropsis oceanica

Overview
NameNO03G05410
Unique NameNO03G05410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length863
Alignment locationchr3:1542449..1543311 +

Link to JBrowse

Properties
Property NameValue
DescriptionMgmt family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1542449..1543311 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006281DNA repair
Vocabulary: INTERPRO
TermDefinition
IPR036217MethylDNA_cys_MeTrfase_DNAb
IPR014048MethylDNA_cys_MeTrfase_DNA-bd
Homology
[Close]
BLAST of NO03G05410 vs. NCBI_GenBank
Match: EWM30004.1 (mgmt family protein [Nannochloropsis gaditana])

HSP 1 Score: 183.0 bits (463), Expect = 1.100e-42
Identity = 96/175 (54.86%), Postives = 118/175 (67.43%), Query Frame = 0 
Query:   53 REVDMHDDHLSATHSTFDPALFEELVYACVNRVPRGRVTTYGHIARLCHHPKHARHVGKALQRLPSNTHVPWQRIINASYSISSRGDGGAGARLQAARLEEEGVALTQDSMGVWKVSAGAMWKTGQAQSLEDLLKEEGGGGEGEGGYVKKSKNGKERKRVNKQVVVDREGEGGEE 228
            ++   +D H     S FD ALF+ LV+ CV  VPRG+VTTYGHIARLCH PKHARHVG+AL+RLP NT VPWQR+INASY+IS RGDGG GA  QA RL EEGV ++QD+MGVW+V     W+TG AQSL +L+K      E +G   K+ K G+  K   K     +  EG +E
Sbjct:    4 KDAIFYDYHEEFAESKFDRALFDRLVHTCVTYVPRGKVTTYGHIARLCHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAMRLGEEGVTVSQDAMGVWRVPRSYAWETGSAQSLAELIKGRQAEEEEDGMTAKEVKEGESHKMKEKSRKRCKREEGTKE 178
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BLAST of NO03G05410 vs. NCBI_GenBank
Match: KZW01473.1 (MGMT family protein [Exidia glandulosa HHB12029])

HSP 1 Score: 105.9 bits (263), Expect = 1.700e-19
Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 0 
Query:   70 DPALFEELVYACVNRVPRGRVTTYGHIARLCHHPKHARHVGKALQRLPSNTHVPWQRIINASYSISSRGDGGAGARLQAARLEEEGVALTQDSMGVWKVS-AGAMWKTGQAQSLEDLLKEEGGGGEGEGGYV 201
            D A F   VY  V  +P GRVT+YGH+A+L   P+H+RHVG+AL+ LP NT+VPWQR+I++S +ISSRG G  GA  Q   LE EGV + +   G   VS A   W   + +  E+  +E+ GG + EG  +
Sbjct:    2 DSAEFHAHVYRVVREIPAGRVTSYGHVAKLMGMPRHSRHVGQALKFLPPNTNVPWQRVISSSGTISSRGPGTNGADRQRQALEAEGVEVREGRTGELLVSLADYGWFPARLEG-EEEAEEDSGGDDSEGAQI 132
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BLAST of NO03G05410 vs. NCBI_GenBank
Match: XP_017991951.1 (mgmt family protein [Malassezia pachydermatis] >KOS14319.1 mgmt family protein [Malassezia pachydermatis])

HSP 1 Score: 105.1 bits (261), Expect = 2.900e-19
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 0 
Query:   69 FDPALFEELVYACVNRVPRGRVTTYGHIARLCHHPKHARHVGKALQRLPSNTHVPWQRIINASYSISSRGDGGAGARLQAARLEEEGVA-----LTQDSMGVWKVSAGA 173
            F+   F  +VY C   +P GRVTTYGHIA+L  +P+H+R VG+AL+ L  ++ VPWQR++ +   IS RGDGGAGA  QA RL EEGV+     L  ++ G W+VS+ A
Sbjct:    8 FNAERFHSMVYECTRLIPYGRVTTYGHIAKLIGYPRHSRMVGQALKFLQDDS-VPWQRVVGSGGVISERGDGGAGAARQADRLREEGVSVVEARLRHNARGAWRVSSMA 115
[Close]
BLAST of NO03G05410 vs. NCBI_GenBank
Match: EJD40875.1 (MGMT family protein [Auricularia subglabra TFB-10046 SS5])

HSP 1 Score: 100.9 bits (250), Expect = 5.400e-18
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 0 
Query:   70 DPALFEELVYACVNRVPRGRVTTYGHIARLCHHPKHARHVGKALQRLPSNTHVPWQRIINASYSISSRGDGGAGARLQAARLEEEGVALTQDSMGVWKVS 170
            D A F  L Y  + +VP GRVT+YGHIA+L   P+H+RHVG+AL+ LP  T+VPWQR++++S +ISSRG G  GA+ Q   LE EGV +T    G   +S
Sbjct:    2 DSAEFHALAYNIIRQVPFGRVTSYGHIAKLMGMPRHSRHVGQALKFLPPGTNVPWQRVVSSSGAISSRGPGTDGAQRQREALEAEGVDVTVGRTGELLIS 101
[Close]
BLAST of NO03G05410 vs. NCBI_GenBank
Match: CCA77740.1 (related to methylated-dna--protein-cysteine methyltransferase [Serendipita indica DSM 11827])

HSP 1 Score: 99.0 bits (245), Expect = 2.100e-17
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 0 
Query:   70 DPALFEELVYACVNRVPRGRVTTYGHIARLCHHPKHARHVGKALQRLPSNTHVPWQRIINASYSISSRGDGGAGARLQAARLEEEGVALTQDSMGVWKVS 170
            D A F E VY  V  VP+G+VT+YGHIA L   P+H+RHVG AL+ L  ++ VPWQRI++++  ISSRG G  GA+ QA  LE EGV +    MG +KVS
Sbjct:    2 DLAEFYEKVYDTVRLVPQGKVTSYGHIAALVGMPRHSRHVGAALKILHEDSDVPWQRIVSSTGVISSRGPGTTGAQRQAEALEAEGVHVETTRMGQFKVS 101
[Close]
BLAST of NO03G05410 vs. NCBI_GenBank
Match: KLO05814.1 (MGMT family protein [Schizopora paradoxa])

HSP 1 Score: 99.0 bits (245), Expect = 2.100e-17
Identity = 57/128 (44.53%), Postives = 78/128 (60.94%), Query Frame = 0 
Query:   70 DPALFEELVYACVNRVPRGRVTTYGHIARLCHHPKHARHVGKALQRLPSNTHVPWQRIINASYSISSRGDGGAGARLQAARLEEEGVALTQDSMGVWKVS-AGAMWKTGQAQSLEDLLKEEGGGGEGE 197
            D A F   VY  V ++P GRVT+YGHIA+L   P+H+RHVG+AL+ L  N+ +PWQR++++S  ISSRG G  GA+ Q   LE+EGV +       + V+ A   W         D ++ EGGGGE E
Sbjct:    2 DSAEFHANVYDAVRQIPHGRVTSYGHIAKLIGMPRHSRHVGQALKFLDVNSDIPWQRVVSSSGKISSRGPGTNGAQRQREALEDEGVEVRVTRENEFSVNFATYGW-------FPDSIELEGGGGEEE 122
[Close]
BLAST of NO03G05410 vs. NCBI_GenBank
Match: PAV14848.1 (MGMT family [Phellinus noxius])

HSP 1 Score: 97.8 bits (242), Expect = 4.600e-17
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 0 
Query:   70 DPALFEELVYACVNRVPRGRVTTYGHIARLCHHPKHARHVGKALQRLPSNTHVPWQRIINASYSISSRGDGGAGARLQAARLEEEGV 157
            D A F   VY+ V ++P GRVT+YGHIA+L   P+H+RHVG+AL+ LP +T+VPWQR+++AS  +SSRG G  GA  Q   L EEGV
Sbjct:    2 DSAEFHAAVYSVVRQIPFGRVTSYGHIAKLIGLPRHSRHVGQALKYLPPDTNVPWQRVVSASGKVSSRGPGTDGAARQREVLIEEGV 88
[Close]
BLAST of NO03G05410 vs. NCBI_GenBank
Match: KZT39050.1 (DNA binding methylated-DNA--cysteine S-methyltransferase [Sistotremastrum suecicum HHB10207 ss-3])

HSP 1 Score: 96.3 bits (238), Expect = 1.300e-16
Identity = 46/96 (47.92%), Postives = 66/96 (68.75%), Query Frame = 0 
Query:   70 DPALFEELVYACVNRVPRGRVTTYGHIARLCHHPKHARHVGKALQRLPSNTHVPWQRIINASYSISSRGDGGAGARLQAARLEEEGVALTQDSMGV 166
            D A F   VY  V ++P G+VT+YGHIA+L   P+H+RHVG+AL+ L   +++PW R+I++S  ISSRG G +GAR Q   LE EG+ +T   +G+
Sbjct:    2 DAAEFHAAVYRVVRQIPPGKVTSYGHIAKLVGMPRHSRHVGQALKYLDPQSNLPWYRVISSSGQISSRGPGTSGARRQRDELEAEGIEVTGGEVGL 97
[Close]
BLAST of NO03G05410 vs. NCBI_GenBank
Match: KIM30585.1 (hypothetical protein M408DRAFT_287780 [Serendipita vermifera MAFF 305830])

HSP 1 Score: 95.5 bits (236), Expect = 2.300e-16
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 0 
Query:   70 DPALFEELVYACVNRVPRGRVTTYGHIARLCHHPKHARHVGKALQRLPSNTHVPWQRIINASYSISSRGDGGAGARLQAARLEEEGVALTQDSMGVWKVS 170
            D A F E VY  +  +P G+VT+YGHIA L   P+H+RHVG AL+ L   + VPWQR+++++ +ISSRG G  GAR QA  LE EG+ + +   G ++V+
Sbjct:    2 DLAEFYEQVYDTIRLIPYGKVTSYGHIAALIGMPRHSRHVGGALKMLDPESDVPWQRVVSSTGAISSRGPGTTGARRQAEALEAEGLTVEETRAGQFRVN 101
[Close]
BLAST of NO03G05410 vs. NCBI_GenBank
Match: KZS89016.1 (MGMT family protein [Sistotremastrum niveocremeum HHB9708])

HSP 1 Score: 95.5 bits (236), Expect = 2.300e-16
Identity = 46/96 (47.92%), Postives = 66/96 (68.75%), Query Frame = 0 
Query:   70 DPALFEELVYACVNRVPRGRVTTYGHIARLCHHPKHARHVGKALQRLPSNTHVPWQRIINASYSISSRGDGGAGARLQAARLEEEGVALTQDSMGV 166
            D A F   VY  V ++P G+VT+YGHIA+L   P+H+RHVG+AL+ L   +++PW R+I++S  ISSRG G +GAR Q   LE EG+ +T   +G+
Sbjct:    2 DAAEFHAAVYRVVRQIPPGKVTSYGHIAKLVGMPRHSRHVGQALKYLDPQSNLPWFRVISSSGQISSRGPGTSGARRQRDELEAEGIEVTGGEVGL 97
The following BLAST results are available for this feature:
BLAST of NO03G05410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30004.11.100e-4254.86mgmt family protein [Nannochloropsis gaditana][more]
KZW01473.11.700e-1945.45MGMT family protein [Exidia glandulosa HHB12029][more]
XP_017991951.12.900e-1949.54mgmt family protein [Malassezia pachydermatis] >KO... [more]
EJD40875.15.400e-1851.00MGMT family protein [Auricularia subglabra TFB-100... [more]
CCA77740.12.100e-1753.00related to methylated-dna--protein-cysteine methyl... [more]
KLO05814.12.100e-1744.53MGMT family protein [Schizopora paradoxa][more]
PAV14848.14.600e-1755.17MGMT family [Phellinus noxius][more]
KZT39050.11.300e-1647.92DNA binding methylated-DNA--cysteine S-methyltrans... [more]
KIM30585.12.300e-1647.00hypothetical protein M408DRAFT_287780 [Serendipita... [more]
KZS89016.12.300e-1647.92MGMT family protein [Sistotremastrum niveocremeum ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005331NSK005331Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05410.1NO03G05410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573329gene_1756Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100425g3gene644Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05410.1NO03G05410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05410 ID=NO03G05410|Name=NO03G05410|organism=Nannochloropsis oceanica|type=gene|length=863bp
CGAAAGAGCGAGTCGTTGGAGTGTTTGCGAGAAGACGGATGTCATGATCA
TGTGCCAAGCACTCACATGTCGAAAAATGCACAAATGCCTAGACTAAGTA
TGAGACGGACAAGGCGTCGGGCAATGTATATTTATGCCGAGGAAGAGCTC
ACTCTCAAATTGAACACCTCTTCCGACATACACTTCCACCACCCCCACTC
ACCTCCTTTGGCAGCAGATCCACGGGAAGTTGACATGCACGACGACCACC
TCTCTGCCACCCACAGCACCTTTGACCCGGCATTGTTTGAAGAACTGGTG
TATGCATGCGTTAATCGCGTCCCCCGGGGCCGCGTCACTACCTACGgtaa
gtcgacagcaaaccagattctctgctttttttgcttagctgtctttcctt
actatcctcttttactacaccgactcccaacgcagGACACATTGCGCGCC
TTTGTCACCATCCAAAGCATGCGCGGCATGTCGGAAAAGCCCTGCAGCGC
CTGCCTTCAAATACTCATGTTCCGTGGCAGCGAATTATCAATGCGTCCTA
TTCCATTTCCTCGCGGGGGGACGGAGGCGCAGGCGCCCGTCTGCAAGCTG
CTAGGTTGGAGGAAGAAGGAGTGGCCCTGACTCAGGATTCCATGGGCGTG
TGGAAAGTTTCAGCGGGTGCTATGTGGAAGACAGGCCAGGCACAGTCACT
AGAGGACCTCTTAAAGGAAGAAGGTGGAGGGGGCGAGGGAGAAGGAGGGT
ACGTGAAGAAGAGTAAGAACGGCAAGGAGCGAAAAAGGGTGAATAAGCAA
GTTGTTGTGGATAGAGAGGGAGAAGGAGGGGAAGAGGGGGCACAATGACT
CTCTGACTGTATA
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protein sequence of NO03G05410.1

>NO03G05410.1-protein ID=NO03G05410.1-protein|Name=NO03G05410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MSKNAQMPRLSMRRTRRRAMYIYAEEELTLKLNTSSDIHFHHPHSPPLAA
DPREVDMHDDHLSATHSTFDPALFEELVYACVNRVPRGRVTTYGHIARLC
HHPKHARHVGKALQRLPSNTHVPWQRIINASYSISSRGDGGAGARLQAAR
LEEEGVALTQDSMGVWKVSAGAMWKTGQAQSLEDLLKEEGGGGEGEGGYV
KKSKNGKERKRVNKQVVVDREGEGGEEGAQ*
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Synonyms
Publications