NO03G05370, NO03G05370 (gene) Nannochloropsis oceanica

Overview
NameNO03G05370
Unique NameNO03G05370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length516
Alignment locationchr3:1534241..1534756 -

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Properties
Property NameValue
Descriptioncell division cycle 48C
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1534241..1534756 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003959ATPase_AAA_core
Homology
BLAST of NO03G05370 vs. NCBI_GenBank
Match: XP_002181897.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC46437.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 166.4 bits (420), Expect = 7.800e-38
Identity = 85/142 (59.86%), Postives = 105/142 (73.94%), Query Frame = 0
Query:    1 MDGLEGRRHVFVIAATNRPELIDPAMLRPGRLDKLLYVPLPGPEDRASILQAVCRGVAIDRKEVDLDEVGRDGRAEGYSGADMAALVHEAGIEVLREGR---ENGRKEGRKLMVGRRHFEAAFGKVSPSVSARDQKRYLAMR 140
            MDGLE RR VFVIAATNRPELIDPAM+RPGRLDKLL+VPLPGPEDR  IL+A+C G+ +   +VD+D +GR  R +GYSGAD AAL+ EAG+ VL+E       G+ +  +L +  +HF+AAF  V PSVS  DQ RY  +R
Sbjct:  410 MDGLESRRSVFVIAATNRPELIDPAMMRPGRLDKLLFVPLPGPEDRVLILKALCTGINL-AADVDMDHIGRSPRTDGYSGADCAALLREAGLAVLKEDATAFAAGKPDSVELKITSKHFDAAFHSVMPSVSKNDQARYERIR 550          
BLAST of NO03G05370 vs. NCBI_GenBank
Match: BAT25230.1 (host cell division cycle protein [Nitzschia sp. IriIs04])

HSP 1 Score: 165.6 bits (418), Expect = 1.300e-37
Identity = 94/171 (54.97%), Postives = 110/171 (64.33%), Query Frame = 0
Query:    1 MDGLEGRRHVFVIAATNRPELIDPAMLRPGRLDKLLYVPLPGPEDRASILQAVCRGVAIDRKEVDLDEVGRDGRAEGYSGADMAALVHEAGIEVLRE---------GRENGRKEGRKLMVGRRHFEAAFGKVSPSVSARDQKRYLAMRHNLCRARGAAGGHANVAGEEEKE 163
            MDGLE RR VFVIAATNRPELIDPAM+RPGRLDKLLYVPLP P DR SIL+A+   V +   +VDLD +GR  RA+GYSGAD AAL+ EAG+ VL+E           E    E R + +  RHF+ AF  V PSVS +DQ RY  MR  +  AR         A E+ KE
Sbjct:  246 MDGLESRRSVFVIAATNRPELIDPAMMRPGRLDKLLYVPLPTPNDRVSILKAISGKVNLG-PDVDLDTIGRSARADGYSGADCAALLREAGLAVLKEEMSASANAMDTEEEEGEERNICITARHFDYAFDHVVPSVSRKDQARYNRMRDRMAHARSRGAVVEETALEDVKE 415          
BLAST of NO03G05370 vs. NCBI_GenBank
Match: GAX13461.1 (ribosome biogenesis ATPase [Fistulifera solaris])

HSP 1 Score: 165.2 bits (417), Expect = 1.700e-37
Identity = 85/148 (57.43%), Postives = 106/148 (71.62%), Query Frame = 0
Query:    1 MDGLEGRRHVFVIAATNRPELIDPAMLRPGRLDKLLYVPLPGPEDRASILQAVCRGVAIDRKEVDLDEVGRDGRAEGYSGADMAALVHEAGIEVLRE--GRENGRKEGRKLMVGRRHFEAAFGKVSPSVSARDQKRYLAMRHNLCRAR 147
            MDGL+GRR VF+IAATNRPELIDPAMLRPGRLDKLLYVPLP PEDR SIL+A+   +A+   +VD + +G   RA GYSGAD AAL+ EAG+ VL+E     +  +E R L +  RHF+ AF  V PSV+ R++ RY  +R  +  AR
Sbjct:  648 MDGLDGRRSVFIIAATNRPELIDPAMLRPGRLDKLLYVPLPTPEDRVSILKALSSNIAL-ADDVDFEVIGMSTRANGYSGADCAALLREAGLAVLKEDTALNDSLQENRSLQISARHFDIAFSSVMPSVTRREEARYQRIRDRMSNAR 794          
BLAST of NO03G05370 vs. NCBI_GenBank
Match: EWM30003.1 (aaa atpase [Nannochloropsis gaditana])

HSP 1 Score: 161.8 bits (408), Expect = 1.900e-36
Identity = 81/99 (81.82%), Postives = 88/99 (88.89%), Query Frame = 0
Query:    1 MDGLEGRRHVFVIAATNRPELIDPAMLRPGRLDKLLYVPLPGPEDRASILQAVCRGVAIDRKEVDLDEVGRDGRAEGYSGADMAALVHEAGIEVLREGR 100
            MDGLEGRRHVFVIAATNRPELIDPAMLRPGRLDKLLYVPLPGPEDRA+IL+AV R +A+D  EVDL+ +GRD RAEGYSGADMAALV EAG+   RE R
Sbjct:  558 MDGLEGRRHVFVIAATNRPELIDPAMLRPGRLDKLLYVPLPGPEDRAAILKAVSRDMAVDAAEVDLEALGRDHRAEGYSGADMAALVREAGVN--RESR 654          
BLAST of NO03G05370 vs. NCBI_GenBank
Match: GAX29521.1 (ribosome biogenesis ATPase [Fistulifera solaris])

HSP 1 Score: 159.5 bits (402), Expect = 9.600e-36
Identity = 82/148 (55.41%), Postives = 106/148 (71.62%), Query Frame = 0
Query:    1 MDGLEGRRHVFVIAATNRPELIDPAMLRPGRLDKLLYVPLPGPEDRASILQAVCRGVAIDRKEVDLDEVGRDGRAEGYSGADMAALVHEAGIEVLRE--GRENGRKEGRKLMVGRRHFEAAFGKVSPSVSARDQKRYLAMRHNLCRAR 147
            MDGL+ RR VF+IAATNRPELIDPAMLRPGRLDKLLYVPLP PEDR SIL+A+   +A+   +VD + +G   RA GYSGAD AAL+ EAG+ VL+E    ++  ++ R L +  RHF+ AF  V PSV+ +++ RY  +R  +  AR
Sbjct:  620 MDGLDARRSVFIIAATNRPELIDPAMLRPGRLDKLLYVPLPTPEDRVSILKALSSNIAL-ADDVDFEVIGMSTRANGYSGADCAALLREAGLAVLKEDTALDDSLQDERSLQICARHFDIAFNSVMPSVTKKEEARYQRIRDRMSNAR 766          
BLAST of NO03G05370 vs. NCBI_GenBank
Match: OEU22417.1 (AAA-domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 151.8 bits (382), Expect = 2.000e-33
Identity = 84/159 (52.83%), Postives = 101/159 (63.52%), Query Frame = 0
Query:    1 MDGLEGRRHVFVIAATNRPELIDPAMLRPGRLDKLLYVPLPGPEDRASILQAVCRGVAIDRKEVDLDEVGRDGRAEGYSGADMAALVHEAGIEVLREGRENGRKEGR--------------------KLMVGRRHFEAAFGKVSPSVSARDQKRYLAMR 140
            MDGLE RR VFVI ATNRPELIDPAM+RPGRLDKLLYVPLP P DR SIL+A+   +++   EVDL ++G   +AEGYSGAD AAL+ EAG+ V++E  +N +   R                     L +  RHF  AF  V PSVS +D  RYL MR
Sbjct:  413 MDGLESRRSVFVIGATNRPELIDPAMMRPGRLDKLLYVPLPEPNDRVSILKALSCSMSLS-PEVDLHKIGTSLQAEGYSGADCAALLREAGLAVMKEFHDNSKSTARPNKDDLXXXXXXXXXXASSFPLCISPRHFNYAFDHVVPSVSRKDHARYLRMR 570          
BLAST of NO03G05370 vs. NCBI_GenBank
Match: PNW78410.1 (hypothetical protein CHLRE_09g398550v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 151.4 bits (381), Expect = 2.600e-33
Identity = 86/171 (50.29%), Postives = 110/171 (64.33%), Query Frame = 0
Query:    1 MDGLEGRRHVFVIAATNRPELIDPAMLRPGRLDKLLYVPLPGPEDRASILQAVCRGVAIDRKEVDLDEVGRDGRAEGYSGADMAALVHEAGIEVLREGRENGRKEGRKLMVGRRHFEAAFGKVSPSVSARDQKRYLAMRHNLCRAR---------------GAAGGHANVA 157
            MDG++ R+ +F++AATNRP++IDPA+LRPGRL+K+LYVPLP P+DRA+IL+A  R   ++  +VDL  V  DGR EGYSGAD AALV EA +  L+E    G   G    VG RHFEAA G+V PSVS +D+  Y A+R  L  +R               GAAGG    A
Sbjct:  924 MDGVDSRQGLFIVAATNRPDMIDPALLRPGRLEKVLYVPLPPPQDRAAILKAQVRKTPLE-PDVDLAAVAIDGRCEGYSGADCAALVREAAVLALKEAMRAGPDCGSP-RVGARHFEAALGRVQPSVSRKDRASYEALRVRLRGSRSVIQPAAAVVEMPPSGAAGGTGEAA 1092          
BLAST of NO03G05370 vs. NCBI_GenBank
Match: XP_001694521.1 (predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 151.0 bits (380), Expect = 3.400e-33
Identity = 79/142 (55.63%), Postives = 102/142 (71.83%), Query Frame = 0
Query:    1 MDGLEGRRHVFVIAATNRPELIDPAMLRPGRLDKLLYVPLPGPEDRASILQAVCRGVAIDRKEVDLDEVGRDGRAEGYSGADMAALVHEAGIEVLREGRENGRKEGRKLMVGRRHFEAAFGKVSPSVSARDQKRYLAMRHNL 143
            MDG++ R+ +F++AATNRP++IDPA+LRPGRL+K+LYVPLP P+DRA+IL+A  R   ++  +VDL  V  DGR EGYSGAD AALV EA +  L+E    G   G    VG RHFEAA G+V PSVS +D+  Y A+R  L
Sbjct:  441 MDGVDSRQGLFIVAATNRPDMIDPALLRPGRLEKVLYVPLPPPQDRAAILKAQVRKTPLE-PDVDLAAVAIDGRCEGYSGADCAALVREAAVLALKEAMRAGPDCGSP-RVGARHFEAALGRVQPSVSRKDRASYEALRVRL 580          
BLAST of NO03G05370 vs. NCBI_GenBank
Match: GAX99541.1 (Hypothetical protein PINS_007377 [Pythium insidiosum])

HSP 1 Score: 150.6 bits (379), Expect = 4.400e-33
Identity = 82/146 (56.16%), Postives = 100/146 (68.49%), Query Frame = 0
Query:    1 MDGLEGRRHVFVIAATNRPELIDPAMLRPGRLDKLLYVPLPGPEDRASILQAVCRGVAIDRKEVDLDEVGRDGRAEGYSGADMAALVHEAGIEVLREGRENGRKEGRKLMVGRRHFEAAFGKVSPSVSARDQKRYLAMRHNLCRAR 147
            MDGL+ R++VFVIAATNRP++IDPAMLRPGRLDKLLYVPLP PEDR  IL+ V +   +   +VDL  +  D R EG+SGAD++AL  EAGI  LRE  +        L +  RHFE AF  V PSVS  DQ+ +  M+ NL RAR
Sbjct:  626 MDGLDARKNVFVIAATNRPDIIDPAMLRPGRLDKLLYVPLPTPEDRVQILRTVTKASRL-HADVDLAAIASDPRCEGFSGADLSALSREAGIAALRE-IDLATASADALAIQHRHFEQAFETVFPSVSRADQRLFDKMKKNLRRAR 769          
BLAST of NO03G05370 vs. NCBI_GenBank
Match: CBJ26144.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 149.4 bits (376), Expect = 9.900e-33
Identity = 84/170 (49.41%), Postives = 114/170 (67.06%), Query Frame = 0
Query:    1 MDGLEGRRHVFVIAATNRPELIDPAMLRPGRLDKLLYVPLPGPEDRASILQAVCRGVAIDRKEVDLDEVGRDGRAEGYSGADMAALVHEAGIEVLRE--------GRENGRKEGRKLMVGRRHFEAAFGKVSPSVSARDQKRYLAMRHNLCRARGAAGGHANVAGEEEKE 163
            MDGLE R++VFV+AATNRPELID AMLRPGRLD+LLYVPLP   DR SIL+A+   V++   +VDL  VG + +AEG+SGAD+AAL+ EAG++VLR+        G+    ++G   +V   +F+ AF +  PSVSA D+  Y++M+  LC+AR         AG  + E
Sbjct:  789 MDGLEARKNVFVVAATNRPELIDQAMLRPGRLDRLLYVPLPSASDRVSILKALSATVSLG-PDVDLHAVGHNPKAEGFSGADLAALLREAGLDVLRQLKSRELIVGKGAYTEKGAGTVVMATNFDNAFLRTQPSVSATDRAFYVSMKDRLCKARAHPSEALPPAGGGDNE 957          
The following BLAST results are available for this feature:
BLAST of NO03G05370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002181897.17.800e-3859.86predicted protein, partial [Phaeodactylum tricornu... [more]
BAT25230.11.300e-3754.97host cell division cycle protein [Nitzschia sp. Ir... [more]
GAX13461.11.700e-3757.43ribosome biogenesis ATPase [Fistulifera solaris][more]
EWM30003.11.900e-3681.82aaa atpase [Nannochloropsis gaditana][more]
GAX29521.19.600e-3655.41ribosome biogenesis ATPase [Fistulifera solaris][more]
OEU22417.12.000e-3352.83AAA-domain-containing protein, partial [Fragilario... [more]
PNW78410.12.600e-3350.29hypothetical protein CHLRE_09g398550v5 [Chlamydomo... [more]
XP_001694521.13.400e-3355.63predicted protein, partial [Chlamydomonas reinhard... [more]
GAX99541.14.400e-3356.16Hypothetical protein PINS_007377 [Pythium insidios... [more]
CBJ26144.19.900e-3349.41conserved unknown protein [Ectocarpus siliculosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005333NSK005333Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05370.1NO03G05370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667618gene_1753Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100425g1gene646Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05370.1NO03G05370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05370 ID=NO03G05370|Name=NO03G05370|organism=Nannochloropsis oceanica|type=gene|length=516bp
ATGGACGGCTTGGAGGGACGGAGGCATGTGTTTGTGATTGCGGCGACGAA
TCGACCGGAGCTCATTGACCCGGCCATGCTGAGACCAGGGAGGTTGGATA
AATTGTTGTATGTGCCGTTACCGGGTCCGGAAGATAGGGCGTCGATCCTG
CAAGCTGTTTGCAGGGGTGTGGCTATTGATAGGAAGGAGGTGGACTTGGA
CGAGGTGGGGAGAGACGGAAGGGCGGAGGGGTACAGTGGGGCAGACATGG
CCGCGTTGGTGCATGAGGCGGGGATCGAAGTGCTGAGAGAGGGGAGGGAG
AACGGAAGGAAGGAGGGGAGGAAATTGATGGTTGGACGGAGGCATTTTGA
GGCGGCGTTTGGAAAGGTGTCTCCTTCGGTGTCGGCCCGCGATCAGAAGA
GATACCTAGCCATGCGTCATAACCTGTGCAGGGCGCGGGGGGCAGCGGGG
GGGCATGCGAATGTGGCGGGAGAGGAGGAGAAAGAAATGGAGAGAAGTAT
GGAAACGAGAGAGTAA
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protein sequence of NO03G05370.1

>NO03G05370.1-protein ID=NO03G05370.1-protein|Name=NO03G05370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MDGLEGRRHVFVIAATNRPELIDPAMLRPGRLDKLLYVPLPGPEDRASIL
QAVCRGVAIDRKEVDLDEVGRDGRAEGYSGADMAALVHEAGIEVLREGRE
NGRKEGRKLMVGRRHFEAAFGKVSPSVSARDQKRYLAMRHNLCRARGAAG
GHANVAGEEEKEMERSMETRE*
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Synonyms
Publications