NO03G05140, NO03G05140 (gene) Nannochloropsis oceanica

Overview
NameNO03G05140
Unique NameNO03G05140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1913
Alignment locationchr3:1451595..1453507 -

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Properties
Property NameValue
DescriptionRieske (2fe-2s) domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1451595..1453507 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
GO:0016491oxidoreductase activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR036922Rieske_2Fe-2S_sf
IPR017941Rieske_2Fe-2S
Homology
BLAST of NO03G05140 vs. NCBI_GenBank
Match: EWM29953.1 (rieske (2fe-2s) domain protein [Nannochloropsis gaditana])

HSP 1 Score: 183.3 bits (464), Expect = 6.400e-43
Identity = 100/165 (60.61%), Postives = 114/165 (69.09%), Query Frame = 0
Query:   16 MQFVRTIAALLLAASVSQAFL---VPTPTSGRALTSRSATVVVGPATDIPRGERKIVDTDAGAVIVANVEGSFYAVLAKCPHLGLPMKTGNIAVEGGEPTITCKFHNSKFELATGKCTAWSESVFGIKGTEGIAGFVGGFGGAKDSPATVFPVLTSEEGLVSIEV 178
            M    T+ A++ A ++S+AFL    P     R L S +ATV VG  T++P GERK+VDT+AGAVIV NV GS YAVLAKCPHLGLPMKTG IA+EGGEPTITCKFHNSKF L  GKC AWSESVFGIK                 SPATVFP   SEEG+VSIE+
Sbjct:    1 MHLASTLLAIIAALTLSEAFLGLKSPGHLPFRRLPSLAATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKXXXXXXXXXXXXXXXXXSPATVFPTSMSEEGIVSIEM 165          
BLAST of NO03G05140 vs. NCBI_GenBank
Match: CAH25375.1 (putative ferredoxin component, partial [Guillardia theta])

HSP 1 Score: 131.7 bits (330), Expect = 2.200e-27
Identity = 67/128 (52.34%), Postives = 82/128 (64.06%), Query Frame = 0
Query:   49 RSATVVVGPATDIPRGERKIVDTDAGAVIVANVEGSFYAVLAKCPHLGLPMKTGNIAVEGGEPTITCKFHNSKFELATGKCTAWSESVFGIKGTEGIAGFVGGFGGAKDSPATVFPVLTSEEGLVSIE 177
            R A   VG   +IP GERKI       V+V N +G+ YA+  KCPHLGLPMKTG I+ +G  P I CKFH SKF+L  GKC  WS  V GI GT+ + GF+G  GGAK+SPATVF V    EG + ++
Sbjct:   31 RMAGEKVGNVNEIPPGERKITKVGDQDVMVVNHKGTVYALSPKCPHLGLPMKTGEISDDG--PCIKCKFHGSKFKLDDGKCVEWSTGVLGIPGTQALGGFIGNVGGAKNSPATVFAVEVDAEGGIIVD 156          
BLAST of NO03G05140 vs. NCBI_GenBank
Match: XP_005833850.1 (hypothetical protein GUITHDRAFT_86526 [Guillardia theta CCMP2712] >EKX46870.1 hypothetical protein GUITHDRAFT_86526 [Guillardia theta CCMP2712])

HSP 1 Score: 131.7 bits (330), Expect = 2.200e-27
Identity = 67/128 (52.34%), Postives = 82/128 (64.06%), Query Frame = 0
Query:   49 RSATVVVGPATDIPRGERKIVDTDAGAVIVANVEGSFYAVLAKCPHLGLPMKTGNIAVEGGEPTITCKFHNSKFELATGKCTAWSESVFGIKGTEGIAGFVGGFGGAKDSPATVFPVLTSEEGLVSIE 177
            R A   VG   +IP GERKI       V+V N +G+ YA+  KCPHLGLPMKTG I+ +G  P I CKFH SKF+L  GKC  WS  V GI GT+ + GF+G  GGAK+SPATVF V    EG + ++
Sbjct:   40 RMAGEKVGNVNEIPPGERKITKVGDQDVMVVNHKGTVYALSPKCPHLGLPMKTGEISDDG--PCIKCKFHGSKFKLDDGKCVEWSTGVLGIPGTQALGGFIGNVGGAKNSPATVFAVEVDAEGGIIVD 165          
BLAST of NO03G05140 vs. NCBI_GenBank
Match: XP_002287415.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94858.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 119.0 bits (297), Expect = 1.500e-23
Identity = 68/162 (41.98%), Postives = 94/162 (58.02%), Query Frame = 0
Query:   17 QFVRTIA-----ALLLAASVSQAFLVPTPTSGRALTSRSATVVVGPATDIPRGERKIVDTDAGAVIVANVEGSFYAVLAKCPHLGLPMKTGNIAVEGGEPTITCKFHNSKFELATGKCTAWSESVFGIKGTEGIAGFVGGFGGAKDSPATVFPVLTSEEGLV 174
            +F RT+A      L L A+ +  F+ P  T G  +T   AT +  P+ D   G+R+I+D D G ++V  V GS+YAV A CPHLGLPMK G ++ +GG PT+TC FHNS FEL TGKCT W     G++    I+G +G  GG +      F +  ++  LV
Sbjct:  302 KFYRTLAMNTFLLLALLANATHGFVAP-ETMGAHMTRLQATTLSCPSVD--EGQREILDGDNGPILVTKVAGSYYAVDATCPHLGLPMKKGKVSNDGGTPTLTCSFHNSCFELGTGKCTKWVSGALGVE-NGFISGIMGKVGGKQQDVKAYFVMEEADGSLV 459          
BLAST of NO03G05140 vs. NCBI_GenBank
Match: XP_005828605.1 (hypothetical protein GUITHDRAFT_153789 [Guillardia theta CCMP2712] >EKX41625.1 hypothetical protein GUITHDRAFT_153789 [Guillardia theta CCMP2712])

HSP 1 Score: 114.4 bits (285), Expect = 3.700e-22
Identity = 54/102 (52.94%), Postives = 67/102 (65.69%), Query Frame = 0
Query:   76 VIVANVEGSFYAVLAKCPHLGLPMKTGNIAVEGGEPTITCKFHNSKFELATGKCTAWSESVFGIKGTEGIAGFVGGFGGAKDSPATVFPVLTSEEGLVSIEV 178
            V++ N E + YA+  KCPHLGL +K+G I  +G  P ITCKFH SKF L TG+C AWS+S  GI GT  I G VG  GG K SPATV+ V    EG V +++
Sbjct:    9 VLLVNHENTIYALNPKCPHLGLSLKSGKITDDGQGPVITCKFHQSKFNLKTGECAAWSQSFLGIPGTGIIGGVVGNMGGPKHSPATVYSVEVDGEGSVMVDI 110          
BLAST of NO03G05140 vs. NCBI_GenBank
Match: EJK77799.1 (hypothetical protein THAOC_00345 [Thalassiosira oceanica])

HSP 1 Score: 99.0 bits (245), Expect = 1.600e-17
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 0
Query:   42 SGRALTSRSATVVVGPATDIPRGERKIVDTDAGAVIVANVEGSFYAVLAKCPHLGLPMKTGNIAVEGGEPTITCKFHNSKFELATGKCTAW 133
            SG +L+SRSA         +  GER+IV    G ++V  V GS+YAV A CPHL LPMK G I V  G+P +TC FHNS FE+ TG+CT W
Sbjct:  729 SGASLSSRSAGSTSLSCQPMAEGEREIVKGPNGPILVTKVAGSYYAVDATCPHLNLPMKKGKITVNNGQPALTCNFHNSCFEMKTGRCTQW 819          
BLAST of NO03G05140 vs. NCBI_GenBank
Match: KOO22639.1 (ferrochelatase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 94.7 bits (234), Expect = 3.000e-16
Identity = 57/159 (35.85%), Postives = 84/159 (52.83%), Query Frame = 0
Query:   20 RTIAALLLAASVSQAFLVPTPTSGRALTSRSATVVVGPATDIP--RGERKIVDTDAGAVIVANVEGSFYAVLAKCPHLGLPMKTGNIAVEGGEPTITCKFHNSKFELATGKCTAWSESVFGIKGTEGIAGFVGGFGGAKDSPATVFPVLTSEEGLVSIE 177
            RT   +LL+A+         P  G A  +  ++V    A  +P    +R +VD   G ++V  V+GS+YAV A CPHLGLPMK G +A      T+TC FHNS + +  G C  W     GI+  E  AG +G  GG K S  + + V  +++G +++E
Sbjct:    6 RTATLILLSAAAGFRAGPRVPPFGHAAAAARSSVACSIAVPVPPADNDRTVVDGPNGPILVTKVKGSYYAVDATCPHLGLPMKRGKVADGADGVTLTCSFHNSCWAMKDGSCKKWVTGALGIE-NEAAAGVMGKLGGQKRSIKS-YKVAVNQDGSLTLE 162          
BLAST of NO03G05140 vs. NCBI_GenBank
Match: OLQ07073.1 (hypothetical protein AK812_SmicGene9552 [Symbiodinium microadriaticum])

HSP 1 Score: 89.7 bits (221), Expect = 9.600e-15
Identity = 57/161 (35.40%), Postives = 84/161 (52.17%), Query Frame = 0
Query:   20 RTIAALLLAASVSQA-----FLVPTPTSGRALTSRSATVVVGPATDIPRGERKIVDTDAGAVIVANVEGSFYAVLAKCPHLGLPMKTGNIAVEGGEPTITCKFHNSKFELATGKCTAWSESVFGIKGTEGIAGFVGGFGGAKDSPATVFPVLTSEEGLVSI 176
            R   A +  A V+Q+     F  P  +   +L +  A V   PA     G+R +VD   G ++VA ++G +YAV AKCPHL LPMK G I      P +TC FHNS+F +  G CT W     G +  + IAG +   GG K +    + V+ +++G +S+
Sbjct:   47 RIALAAVTIALVTQSLDFAGFRSPARSPRTSLHAVCAQVKEPPA----EGDRVVVDGSDGPIVVAKIDGKYYAVDAKCPHLNLPMKKGKIENGPDGPRLTCNFHNSQFNMKDGLCTRWVTGALGFE-NDFIAGVMSNVGGEKKN-LQAYEVVEADDGSLSV 201          
BLAST of NO03G05140 vs. NCBI_GenBank
Match: EJK76789.1 (hypothetical protein THAOC_01432, partial [Thalassiosira oceanica])

HSP 1 Score: 87.4 bits (215), Expect = 4.800e-14
Identity = 41/83 (49.40%), Postives = 49/83 (59.04%), Query Frame = 0
Query:   74 GAVIVANVEGSFYAVLAKCPHLGLPMKTGNIAVEGGEPTITCKFHNSKFELATGKCTAWSESVFGIKGTEGIAGFVGGFGGAK 157
            G ++V  V GS+YAV A CPHL LPMK G I V  G+P +TC FHNS FE+ TG+CT W     G    E I G +   G  K
Sbjct:    3 GPILVTKVAGSYYAVDATCPHLNLPMKKGKITVNNGQPALTCNFHNSCFEMKTGRCTQWVTGALG-SDNELIGGIMSSVGSEK 84          
BLAST of NO03G05140 vs. NCBI_GenBank
Match: XP_005834396.1 (hypothetical protein GUITHDRAFT_162719, partial [Guillardia theta CCMP2712] >EKX47416.1 hypothetical protein GUITHDRAFT_162719, partial [Guillardia theta CCMP2712])

HSP 1 Score: 85.1 bits (209), Expect = 2.400e-13
Identity = 51/131 (38.93%), Postives = 67/131 (51.15%), Query Frame = 0
Query:   60 DIPRGERKIVDTDAGAVIVANVEGSFYAVLAKCPHLGLPMKTGNIAVEGGEP--TITCKFHNSKFEL-ATGKCTAWSESVFGIKGTEGIAGFVGGF----------GGAKDSPATVFPVLTSEEGLVSIEV 178
            D+  G+ K+V      ++V   EG  +A   KCPHLGL +K G I          + C FH SKF L   GKC  WSESVFGIKGTE I   +G F           G K +PA V+ V   E+G + +++
Sbjct:   64 DVAEGQSKVVTARNIKLVVTKKEGKLFAFNNKCPHLGLSLKRGQITGSDDRHGICVVCPFHKSKFSLEEEGKCKVWSESVFGIKGTESIGNKIGQFVAPMAKSVNPTGEKAAPAAVYGVKV-EDGEILVDL 193          
The following BLAST results are available for this feature:
BLAST of NO03G05140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29953.16.400e-4360.61rieske (2fe-2s) domain protein [Nannochloropsis ga... [more]
CAH25375.12.200e-2752.34putative ferredoxin component, partial [Guillardia... [more]
XP_005833850.12.200e-2752.34hypothetical protein GUITHDRAFT_86526 [Guillardia ... [more]
XP_002287415.11.500e-2341.98predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_005828605.13.700e-2252.94hypothetical protein GUITHDRAFT_153789 [Guillardia... [more]
EJK77799.11.600e-1751.65hypothetical protein THAOC_00345 [Thalassiosira oc... [more]
KOO22639.13.000e-1635.85ferrochelatase [Chrysochromulina sp. CCMP291][more]
OLQ07073.19.600e-1535.40hypothetical protein AK812_SmicGene9552 [Symbiodin... [more]
EJK76789.14.800e-1449.40hypothetical protein THAOC_01432, partial [Thalass... [more]
XP_005834396.12.400e-1338.93hypothetical protein GUITHDRAFT_162719, partial [G... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005365NSK005365Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05140.1NO03G05140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573220gene_1721Nannochloropsis oceanica (N. oceanica CCMP1779)gene
fdcgene691Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05140.1NO03G05140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05140 ID=NO03G05140|Name=NO03G05140|organism=Nannochloropsis oceanica|type=gene|length=1913bp
GCGCTGATGTTTGTGTTGTATGTGGGGAGGCGGGTAAACGAAGGCGTGAG
GATGCAGATATGGGCACACAGAATGAGCGATCAGAGGCTGGCGACGCTGG
CCTAGCCAAAACCACCAACTGTGGACGTGCTTCTTATCATGGAAATGATT
CGTTACGTGTCCAGTGTGTGTTGGCGGCTGCTTAGTGTCGTTGAGGTGTG
GTGCGGCAAGAAGGAGGATGTCCCTCACGACTGATTTGATGCACAACTGA
AGCCATCAGTGACGTTGATGAGGTTGCCCCCAACGCTCAACAAAGCCCCT
TATAACCAAGCATTTGATCGCCTTACGCGCAACCAATTCATCTCAACACC
ACAGACACATTTGATCGAGGTATATTCCCCTCATGTGCATGTCGAACGGC
CCAGTTTTGTACCAAGCGGTCTTCTATATCGCGACCGCGACCTCGCCCAA
GCAAGGAGGGAGGAGGCGAGTCGCAGCCGAGCTGTCAAGCGACAAGCAAG
CATTTTTACCGCCTGAGACAAACGACCAACGCACAATAAACTGACATTTA
CCCGCATGAATAGACAGGAGCCACTCCTCTCTCCATCCGTACAGACAATC
ATGCAGTTCGTCCGCACCATCGCCGCCTTGCTCCTTGCTGCCTCTGTCTC
CCAGgtaaggccccttacgctcccttgctcaccgctgtgtccatctatca
atccattcatacatctttactacctacccttcccttgctcagGCTTTCCT
CGTTCCCACTCCGACCTCGGGTCGTGCCCTGACCAGCCGCTCGGCCACCG
TAGTCGTCGGGCCGGCGACAGACATCCCTCGAGgtacgccggatgagaag
cagagagaccatgcatagtattcacgggtgtataggtagtggtctctgat
caatgtacattcccgtcttacatatttgtgtgctgtttccgtctttttta
tggcatgtctgcactccttacttccatcgaccatactacatcactttcca
taagcctttctcaacccttcttctccccgttttttcccttcttcccgttg
ttttcctcacagGCGAGCGCAAAATCGTCGATACGGACGCTGGGGCTGTG
ATTGTGGCGAACGTGGAAGGGAGCTTTTATGCTGTGTTGGCCAAATGCCC
TCACCTGGGCTTGCCTATGAAAACGGgtaagtaggcaggaagatagcaga
aagtcacattgaattgtgcgaggctggttgtgtgtgcatgcatcgttgat
cattctgtatctttcttcaatgttttgttcaatgttatctcaagatggca
taatacgcccctctttctgcttccccccccaacattcaaagatcacaaca
tacatatttccttcccttcctaaccctccattcatctcatcttctgtttt
aactaccttgagGAAATATCGCGGTTGAGGGTGGAGAGCCGACGATCACC
TGTAAATTTCACAACTCGAAATTTGAGCTCGCGACCGGGAAGTGCACGGC
CTGGTCTGAGAGCGTGTTTGGCATTAAGGGAACCGAAGGCATTGCTGGTT
TCGTGGGTGGCTTTGGTGGTGCAAAGGATTCGCCGGCGACTGTCTTTCCC
GTCTTAACCAGCGAGGAGGGGTTGGTGAGTATCGAGGTGTGAAGGGGTGA
AGAAGGATACGGGATGGGAGAAGGACATGATTAATTTTGACTACTTGTTT
GGGCTCGAGGACGACTGAGAGGGAGCAAAACAGACTGATGCATGACACGA
CGGAAAATTCAAAGCTTTCCTTTTTTCGACCATTGATTGATTCATTGAAT
GACTGAGACATTGAATGAAAACGCACCCATAATGAAAAAGAAAAGAAAAT
ACATCGAGTTGAACCAACCTCCCCCTTTTGCATGTGTGCCTTTCCGAGCT
TTTGGTTAGACAA
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protein sequence of NO03G05140.1

>NO03G05140.1-protein ID=NO03G05140.1-protein|Name=NO03G05140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MNRQEPLLSPSVQTIMQFVRTIAALLLAASVSQAFLVPTPTSGRALTSRS
ATVVVGPATDIPRGERKIVDTDAGAVIVANVEGSFYAVLAKCPHLGLPMK
TGNIAVEGGEPTITCKFHNSKFELATGKCTAWSESVFGIKGTEGIAGFVG
GFGGAKDSPATVFPVLTSEEGLVSIEV*
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Synonyms
Publications