NO03G05080, NO03G05080 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G05080 vs. NCBI_GenBank
Match: XP_005853672.1 (selenoprotein t [Nannochloropsis gaditana CCMP526] >EKU22686.1 selenoprotein t [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 95.9 bits (237), Expect = 2.500e-16 Identity = 53/117 (45.30%), Postives = 69/117 (58.97%), Query Frame = 0 Query: 220 VQVAVFMLMVTGRVVFRLLGAEP-PAWFENMMNNKIQTFAIILLGNTAAASLAATGAFEITYFGPP---------VGGR-XXXXXXXXXXHLVFSKLATGGMPNGHEILRRLRELGV 326 + + +LM+ GR +FR G P PAW E +++NK+QT A++LLGNT SL+ATGAFE+TY+ P GGR HL+FSKLA G MP G EIL L E G+ Sbjct: 1 MDLTAVLLMIAGRPLFRAAGVTPTPAWLEALLSNKLQTLAVVLLGNTLVTSLSATGAFEVTYYEPSPLPPEEEGREGGREEGEEDEAWIPHLIFSKLAMGRMPTGDEILTGLAERGL 117
BLAST of NO03G05080 vs. NCBI_GenBank
Match: XP_009041350.1 (hypothetical protein AURANDRAFT_77992, partial [Aureococcus anophagefferens] >EGB03925.1 hypothetical protein AURANDRAFT_77992, partial [Aureococcus anophagefferens]) HSP 1 Score: 82.8 bits (203), Expect = 2.200e-12 Identity = 43/126 (34.13%), Postives = 62/126 (49.21%), Query Frame = 0 Query: 199 IHGENYPPPPYAIFLATIMSYVQVAVFMLMVTGRVVFRLLGAEPPAWFENMMNNKIQTFAIILLGNTAAASLAATGAFEITYFGPPVGGRXXXXXXXXXXHLVFSKLATGGMPNGHEILRRLRELG 325 + E YPPP +F A QVA L++ G VF+L GA P W+ ++ NK+ F + + N AA + ATGAFEI G L FSKL TG +P+ +++R ++ G Sbjct: 55 VAAEQYPPPAVGVFAAQAAGMAQVACVALLLGGEKVFQLFGAATPGWYHSVAENKMMAFGAVWMANNVAAQMVATGAFEIHVNG----------------ELAFSKLETGRLPSAADVVRGMKRAG 164
BLAST of NO03G05080 vs. NCBI_GenBank
Match: CBJ25760.1 (selenoprotein T [Ectocarpus siliculosus]) HSP 1 Score: 74.3 bits (181), Expect = 7.700e-10 Identity = 58/189 (30.69%), Postives = 80/189 (42.33%), Query Frame = 0 Query: 142 PHILVQYC----YRGSFVQLSKFLRHHLPSXXXXXXXXXXXXXXXXXXXXXXXXDPEQTFVIHGENYPPPPYAIFLATIMSYVQVAVFMLMVTGRVVFRLLGAEPPAWFENMMNNKIQTFAIILLGNTAAASLAATGAFEITYFGPPVGGRXXXXXXXXXXHLVFSKLA-TGGMPNGHEILRRLRELGV 326 P +LVQ+C R +F +L FL H P+ + I GE YPPPP A LAT+ SY QV ++ G ++F LG P + M N + T + + N+ SL ATGAFE++ G LVFS+LA G P G +LR + G+ Sbjct: 154 PQVLVQFCVSXGMRRNFEELRSFLHAHYPAL-------------------------AKAQSIRGELYPPPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDG----------------ELVFSRLAGEGQFPTGALLLREFEKRGL 301
BLAST of NO03G05080 vs. NCBI_GenBank
Match: XP_004995650.1 (hypothetical protein PTSG_03057 [Salpingoeca rosetta] >EGD82414.1 hypothetical protein PTSG_03057 [Salpingoeca rosetta]) HSP 1 Score: 66.2 bits (160), Expect = 2.100e-7 Identity = 46/127 (36.22%), Postives = 62/127 (48.82%), Query Frame = 0 Query: 198 VIHGENYPPPPYAIFLATIMSYVQVAVFMLMVTGRVVFRLLGAEPPAWF----ENMMNNKIQTFAIILLGNTAAASLAATGAFEITYFGPPVGGRXXXXXXXXXXHLVFSKLATGGMPNGHEILRRL 321 VI GENY P P + +A+I+ + + +LM+ G +F LG PP + EN M + TF L NT +L +TGAFEI G L+FSKL TG MP E++R L Sbjct: 30 VIKGENYIPNPNVLTIASIIDLISWTIILLMLFGDYIFNALGIAPPNLYLQAKENSMLVIVMTF---FLSNTIKQNLLSTGAFEIALDG----------------DLLFSKLETGRMPAWPELMRTL 137
BLAST of NO03G05080 vs. NCBI_GenBank
Match: XP_008553953.1 (PREDICTED: selT-like protein [Microplitis demolitor]) HSP 1 Score: 65.5 bits (158), Expect = 3.600e-7 Identity = 36/121 (29.75%), Postives = 62/121 (51.24%), Query Frame = 0 Query: 199 IHGENYPPPPYAIFLATIMSYVQVAVFMLMVTGRVVFRLLGAEPPAWFENMMNNKIQT-FAIILLGNTAAASLAATGAFEITYFGPPVGGRXXXXXXXXXXHLVFSKLATGGMPNGHEILR 319 IHG+NY PP Y +F+A + + ++ + +L+++G + + LG P W++ +NNK+ I + N L ++GAFEI + P V+SKL TG +P E+ + Sbjct: 72 IHGQNYDPPGYNMFMAKFLGFAKILIILLIISGINIAQWLGQPPLFWWDWCLNNKLYACIMIFFICNAIEGQLISSGAFEIHFNDVP----------------VWSKLETGRVPQPPELFQ 176 The following BLAST results are available for this feature:
BLAST of NO03G05080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G05080 ID=NO03G05080|Name=NO03G05080|organism=Nannochloropsis oceanica|type=gene|length=1283bpback to top protein sequence of NO03G05080.1 >NO03G05080.1-protein ID=NO03G05080.1-protein|Name=NO03G05080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bpback to top Synonyms
Publications
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