NO03G05070, NO03G05070 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G05070 vs. NCBI_GenBank
Match: EWM29947.1 (60s acidic ribosomal protein [Nannochloropsis gaditana]) HSP 1 Score: 130.2 bits (326), Expect = 4.300e-27 Identity = 107/119 (89.92%), Postives = 111/119 (93.28%), Query Frame = 0 Query: 1 MSNLTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLAGKMEDLITSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGMDMFGGGGDGY 120 MSNLTK+QKDELVTSYAALALYDGDSE+SSEQL+AFI ATGNEVEPYWPM+FSKFL GKMEDLITSV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G MDMF GGGDGY Sbjct: 1 MSNLTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLGGKMEDLITSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLGGAMDMF-GGGDGY 118
BLAST of NO03G05070 vs. NCBI_GenBank
Match: CBN75193.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 83.6 bits (205), Expect = 4.700e-13 Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 0 Query: 3 NLTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA 58 +++K+ DEL TSYAALALYDGD+EI+S+QL+A ITATGNEVE YWP LFS FLA Sbjct: 2 SISKELHDELCTSYAALALYDGDAEITSDQLSALITATGNEVEGYWPTLFSGFLA 56
BLAST of NO03G05070 vs. NCBI_GenBank
Match: CCA22595.1 (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 80.1 bits (196), Expect = 5.100e-12 Identity = 39/65 (60.00%), Postives = 53/65 (81.54%), Query Frame = 0 Query: 4 LTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA--GKMEDLITS 67 L+K+Q DEL SYA+L L+DG++EI+S+ L + ITA+GNEVEPYWP LF+ FL+ G++ DLITS Sbjct: 3 LSKEQHDELCVSYASLILFDGEAEITSDALMSVITASGNEVEPYWPTLFAGFLSKEGRIMDLITS 67
BLAST of NO03G05070 vs. NCBI_GenBank
Match: CCI42422.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 80.1 bits (196), Expect = 5.100e-12 Identity = 39/65 (60.00%), Postives = 53/65 (81.54%), Query Frame = 0 Query: 4 LTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA--GKMEDLITS 67 L+K+Q DEL SYA+L L+DG++EI+S+ L + ITA+GNEVEPYWP LF+ FL+ G++ DLITS Sbjct: 3 LSKEQHDELCVSYASLILFDGEAEITSDALMSVITASGNEVEPYWPTLFAGFLSKEGRIMDLITS 67
BLAST of NO03G05070 vs. NCBI_GenBank
Match: XP_009835866.1 (hypothetical protein H257_10853, partial [Aphanomyces astaci] >ETV74779.1 hypothetical protein H257_10853, partial [Aphanomyces astaci]) HSP 1 Score: 79.3 bits (194), Expect = 8.800e-12 Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 0 Query: 4 LTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA--GKMEDLI 65 +TK+Q DEL SYAAL L+DGD+EI+SE L+ ITA+GNEVEPYWP LF+ L+ GK+ +LI Sbjct: 27 ITKEQHDELAVSYAALVLFDGDAEITSEALSNVITASGNEVEPYWPTLFAGLLSKEGKLLELI 89
BLAST of NO03G05070 vs. NCBI_GenBank
Match: XP_012193943.1 (hypothetical protein SPRG_00459 [Saprolegnia parasitica CBS 223.65] >KDO35615.1 hypothetical protein SPRG_00459 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 79.0 bits (193), Expect = 1.100e-11 Identity = 38/64 (59.38%), Postives = 51/64 (79.69%), Query Frame = 0 Query: 4 LTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA--GKMEDLIT 66 LTK+Q DEL +YA++ L+DG++EI+SE L+ I A+GNEVEPYWPMLF+ L+ GKM +LIT Sbjct: 3 LTKEQHDELCVAYASMILFDGEAEITSEALSNVIVASGNEVEPYWPMLFANLLSQDGKMLELIT 66
BLAST of NO03G05070 vs. NCBI_GenBank
Match: XP_008607293.1 (hypothetical protein SDRG_03437 [Saprolegnia diclina VS20] >EQC39232.1 hypothetical protein SDRG_03437 [Saprolegnia diclina VS20]) HSP 1 Score: 77.8 bits (190), Expect = 2.600e-11 Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 0 Query: 4 LTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA--GKMEDLIT 66 LTK+Q DEL +YA++ L+DG++EI+SE L I A+GNEVEPYWPMLF+ L+ GKM +LIT Sbjct: 30 LTKEQHDELCVAYASMILFDGEAEITSEALANVIVASGNEVEPYWPMLFANLLSQDGKMLELIT 93
BLAST of NO03G05070 vs. NCBI_GenBank
Match: XP_008868587.1 (hypothetical protein H310_05609 [Aphanomyces invadans] >ETW03203.1 hypothetical protein H310_05609 [Aphanomyces invadans]) HSP 1 Score: 77.8 bits (190), Expect = 2.600e-11 Identity = 85/116 (73.28%), Postives = 96/116 (82.76%), Query Frame = 0 Query: 4 LTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA--GKMEDLITSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGMDMFGGGGD 118 +TK+Q DEL SYAAL L+DG++EI+SE L+ I A+GNEVEPYWP LF+ L+ GKM +LIT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MDMFGGG D Sbjct: 3 ITKEQHDELAVSYAALILFDGEAEITSEALSTVIAASGNEVEPYWPTLFAGLLSKDGKMLELITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDMFGGGSD 118
BLAST of NO03G05070 vs. NCBI_GenBank
Match: OQR98783.1 (hypothetical protein ACHHYP_07873 [Achlya hypogyna]) HSP 1 Score: 77.4 bits (189), Expect = 3.300e-11 Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 0 Query: 4 LTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGNEVEPYWPMLFSKFLA--GKMEDLI 65 LTK+Q DEL +YA++ L+DG++EI+SE L+ I A+GNEVEPYWPMLF+ L+ GKM +LI Sbjct: 3 LTKEQHDELCVAYASMILFDGEAEITSESLSNVIAASGNEVEPYWPMLFANLLSKDGKMLELI 65
BLAST of NO03G05070 vs. NCBI_GenBank
Match: EJK66365.1 (hypothetical protein THAOC_12722 [Thalassiosira oceanica]) HSP 1 Score: 76.3 bits (186), Expect = 7.400e-11 Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 0 Query: 1 MSNLTKDQKDELVTSYAALALYDGDSEISSEQLNAFITATGN-EVEPYWPMLFSKFL-AGKMEDLITS 67 M LTKDQKDE TS+AA+ALYDG ++ISSEQ+N + ATGN EV ++P++FS FL A K+ ++I S Sbjct: 1 MDKLTKDQKDEYATSFAAIALYDGGADISSEQINTLLEATGNTEVAAFYPIIFSNFLSAEKISEMIVS 68 The following BLAST results are available for this feature:
BLAST of NO03G05070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G05070 ID=NO03G05070|Name=NO03G05070|organism=Nannochloropsis oceanica|type=gene|length=657bpback to top protein sequence of NO03G05070.1 >NO03G05070.1-protein ID=NO03G05070.1-protein|Name=NO03G05070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=120bpback to top Synonyms
Publications
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