NO03G05050, NO03G05050 (gene) Nannochloropsis oceanica

Overview
NameNO03G05050
Unique NameNO03G05050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length792
Alignment locationchr3:1431307..1432098 +

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Properties
Property NameValue
DescriptionPPPDE putative thiol peptidase family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1431307..1432098 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008580PPPDE_dom
Homology
BLAST of NO03G05050 vs. NCBI_GenBank
Match: KZV46591.1 (desumoylating isopeptidase 1, partial [Dorcoceras hygrometricum])

HSP 1 Score: 97.8 bits (242), Expect = 5.200e-17
Identity = 55/140 (39.29%), Postives = 78/140 (55.71%), Query Frame = 0
Query:   68 LRVYDIG-GKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAML 207
            L VYD+  G    + +  L K +  IWH G+ VYG EY+F   I+    G   T +G  P    DLG T V +E FE YL  E+D R+  +TY++ THNCN+FS +   FL+G ++  P YIL   ++ + + P G  ML
Sbjct:   10 LHVYDLSQGLARQLSTTFLGKVIEGIWHTGIVVYGNEYYFGGGIQHAPAG--TTPYG-TPLKVVDLGVTHVPKEVFETYL-REIDNRYTAETYRLLTHNCNNFSNEVAQFLVGASI--PEYILNLPNEVMSS-PMGALML 142          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: XP_016696308.1 (PREDICTED: deSI-like protein At4g17486 [Gossypium hirsutum])

HSP 1 Score: 97.8 bits (242), Expect = 5.200e-17
Identity = 58/146 (39.73%), Postives = 81/146 (55.48%), Query Frame = 0
Query:   68 LRVYDIG-GKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAMLTKTIAN 213
            L VYD+  G    +   LL K +  IWH GV VYG EY+F   I+    G   T +G  P    DLG T V ++ FE YL +E+  R+  +TY + THNCN+FS +   FL+G N+  P YIL+  ++ + + P G A+L   I N
Sbjct:   10 LNVYDLSQGLARQLSMTLLGKPIEGIWHTGVVVYGNEYYFGGGIQHSPAG--TTPYG-TPIRVIDLGVTHVPKDVFEMYL-QEISPRYTAETYSLLTHNCNNFSNEVAQFLVGSNI--PDYILQLPNEVMSS-PMG-ALLMPMIQN 147          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: XP_016710535.1 (PREDICTED: deSI-like protein At4g17486 [Gossypium hirsutum] >XP_016710536.1 PREDICTED: deSI-like protein At4g17486 [Gossypium hirsutum])

HSP 1 Score: 97.8 bits (242), Expect = 5.200e-17
Identity = 58/146 (39.73%), Postives = 81/146 (55.48%), Query Frame = 0
Query:   68 LRVYDIG-GKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAMLTKTIAN 213
            L VYD+  G    +   LL K +  IWH GV VYG EY+F   I+    G   T +G  P    DLG T V ++ FE YL +E+  R+  +TY + THNCN+FS +   FL+G N+  P YIL+  ++ + + P G A+L   I N
Sbjct:   10 LNVYDLSQGLARQLSMTLLGKPIEGIWHTGVVVYGNEYYFGGGIQHSPAG--TTPYG-TPIRVIDLGVTHVPKDVFEMYL-QEISPRYTAETYSLLTHNCNNFSNEVAQFLVGSNI--PDYILQLPNEVMSS-PMG-ALLMPMIQN 147          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: OAY64608.1 (Desumoylating isopeptidase 1 [Ananas comosus])

HSP 1 Score: 97.8 bits (242), Expect = 5.200e-17
Identity = 56/140 (40.00%), Postives = 79/140 (56.43%), Query Frame = 0
Query:   68 LRVYDIG-GKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAML 207
            L VYD+  G    + +  L K + AIWH GV VYG EY+F   I+    G   T +G  P    DLG T V +E FE YL +E+  R+  +TY + +HNCN+FS +   FL+G ++  PSYILE     +++ P G  +L
Sbjct:   16 LNVYDLSQGLARQLSTTFLGKAIEAIWHTGVVVYGTEYYFGAGIQQDPAG--RTPYG-TPVRVVDLGVTHVPKEVFEDYL-QEISGRYTPETYNLLSHNCNNFSNEVAQFLVGASI--PSYILELPSDVMNS-PMGALIL 148          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: XP_020094687.1 (desumoylating isopeptidase 1-like [Ananas comosus])

HSP 1 Score: 97.8 bits (242), Expect = 5.200e-17
Identity = 56/140 (40.00%), Postives = 79/140 (56.43%), Query Frame = 0
Query:   68 LRVYDIG-GKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAML 207
            L VYD+  G    + +  L K + AIWH GV VYG EY+F   I+    G   T +G  P    DLG T V +E FE YL +E+  R+  +TY + +HNCN+FS +   FL+G ++  PSYILE     +++ P G  +L
Sbjct:   10 LNVYDLSQGLARQLSTTFLGKAIEAIWHTGVVVYGTEYYFGAGIQQDPAG--RTPYG-TPVRVVDLGVTHVPKEVFEDYL-QEISGRYTPETYNLLSHNCNNFSNEVAQFLVGASI--PSYILELPSDVMNS-PMGALIL 142          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: PPD70316.1 (hypothetical protein GOBAR_DD32809 [Gossypium barbadense] >PPR80571.1 hypothetical protein GOBAR_AA40141 [Gossypium barbadense])

HSP 1 Score: 97.8 bits (242), Expect = 5.200e-17
Identity = 58/146 (39.73%), Postives = 81/146 (55.48%), Query Frame = 0
Query:   68 LRVYDIG-GKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAMLTKTIAN 213
            L VYD+  G    +   LL K +  IWH GV VYG EY+F   I+    G   T +G  P    DLG T V ++ FE YL +E+  R+  +TY + THNCN+FS +   FL+G N+  P YIL+  ++ + + P G A+L   I N
Sbjct:   10 LNVYDLSQGLARQLSMTLLGKPIEGIWHTGVVVYGNEYYFGGGIQHSPAG--TTPYG-TPIRVIDLGVTHVPKDVFEMYL-QEISPRYTAETYSLLTHNCNNFSNEVAQFLVGSNI--PDYILQLPNEVMSS-PMG-ALLMPMIQN 147          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: XP_002454765.1 (desumoylating isopeptidase 1 [Sorghum bicolor] >EES07741.1 hypothetical protein SORBI_3004G341800 [Sorghum bicolor])

HSP 1 Score: 97.4 bits (241), Expect = 6.900e-17
Identity = 52/123 (42.28%), Postives = 72/123 (58.54%), Query Frame = 0
Query:   68 LRVYDI-GGKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYIL 190
            L VYD+  G    + ++ L K + AIWH GV VYG EY+F   I+S   G   T +G  P  T +LG T + RE FE YL  ++  R+  +TY++ THNCN+FS +   FL+G    +P YIL
Sbjct:   10 LNVYDLSNGLARQLSTSFLGKPIEAIWHTGVVVYGNEYYFGGGIQSSPAG--TTPYGR-PLRTVELGVTHIPREVFEDYL-RDIAPRYTAETYRLLTHNCNNFSHEVAQFLVGTGAGVPDYIL 128          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: XP_020699113.1 (desumoylating isopeptidase 1 [Dendrobium catenatum] >PKU72242.1 DeSI-like protein [Dendrobium catenatum])

HSP 1 Score: 97.4 bits (241), Expect = 6.900e-17
Identity = 62/184 (33.70%), Postives = 94/184 (51.09%), Query Frame = 0
Query:   68 LRVYDIG-GKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILE------NSDKALDALPQGQAMLTKTIANQVARVVMLAWGNANRSKEEIARREARRKTKKI 245
            L +YD+  G    +  A L K + AIWH G+ VYG EY+F   I+   +G   T +G VP  + +LG T V +E FE YL +E+ +R+  +TY++ +HNCN+FS +   FL+G ++  P YIL+      NS  A   LP  Q + T   +  V +       N    +  + R  A    K +
Sbjct:   10 LNIYDLSQGLARQLSVAFLGKSIEAIWHTGIVVYGNEYYFGAGIQHDPVG--RTPYG-VPLRSVELGVTHVPKEIFEDYL-KEISSRYTAETYRLLSHNCNNFSNEVAQFLVGTSI--PDYILQLPNDVMNSPMAPLILPMIQQLETTMRSGAVPQAPQFVSPNLKAQQSPVVRATASNPVKPV 187          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: XP_021763447.1 (desumoylating isopeptidase 1-like [Chenopodium quinoa])

HSP 1 Score: 97.4 bits (241), Expect = 6.900e-17
Identity = 54/140 (38.57%), Postives = 82/140 (58.57%), Query Frame = 0
Query:   68 LRVYDIG-GKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAML 207
            L VYD+  G    + +  L K + AIWH G+ VYGKEY+F   I+    G T+  +G  P    DLG T + ++ FE+YLEE  D R+  +TY + +HNCN+FS +   FL+G ++  P YIL+  ++ + + P G  +L
Sbjct:   10 LHVYDLSQGLARQLSTTFLGKAIEAIWHTGIVVYGKEYFFGGGIQHAPAGSTQ--YG-TPMKVVDLGITYLPQDVFESYLEEISD-RYTAETYSLLSHNCNNFSNEVAQFLVGTSI--PDYILQLPNEVMSS-PMGAMIL 142          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: PPR91758.1 (hypothetical protein GOBAR_AA28917 [Gossypium barbadense])

HSP 1 Score: 97.4 bits (241), Expect = 6.900e-17
Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 0
Query:   68 LRVYDIG-GKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAMLTK 209
            L VYD+  G    +   LL K +  IWH GV VYG EY+F   I+    G   T +G  P    DLG T V ++ FE YL +E+  R+  +TY + THNCN+FS +   FL+G N+  P YIL+  ++ + + P G A+L K
Sbjct:   10 LNVYDLSQGLARQLSMTLLGKPIEGIWHTGVVVYGNEYYFGGGIQHSPAG--TTPYG-TPIRVIDLGVTHVPKDVFEMYL-QEISPRYTAETYSLLTHNCNNFSNEVAQFLVGSNI--PDYILQLPNEVMSS-PMG-ALLVK 143          
The following BLAST results are available for this feature:
BLAST of NO03G05050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KZV46591.15.200e-1739.29desumoylating isopeptidase 1, partial [Dorcoceras ... [more]
XP_016696308.15.200e-1739.73PREDICTED: deSI-like protein At4g17486 [Gossypium ... [more]
XP_016710535.15.200e-1739.73PREDICTED: deSI-like protein At4g17486 [Gossypium ... [more]
OAY64608.15.200e-1740.00Desumoylating isopeptidase 1 [Ananas comosus][more]
XP_020094687.15.200e-1740.00desumoylating isopeptidase 1-like [Ananas comosus][more]
PPD70316.15.200e-1739.73hypothetical protein GOBAR_DD32809 [Gossypium barb... [more]
XP_002454765.16.900e-1742.28desumoylating isopeptidase 1 [Sorghum bicolor] >EE... [more]
XP_020699113.16.900e-1733.70desumoylating isopeptidase 1 [Dendrobium catenatum... [more]
XP_021763447.16.900e-1738.57desumoylating isopeptidase 1-like [Chenopodium qui... [more]
PPR91758.16.900e-1740.14hypothetical protein GOBAR_AA28917 [Gossypium barb... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005376NSK005376Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05050.1NO03G05050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573188gene_1712Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100510g2gene701Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05050.1NO03G05050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05050 ID=NO03G05050|Name=NO03G05050|organism=Nannochloropsis oceanica|type=gene|length=792bp
ATGCCAAGGCTGTCGTCCTCTCTCCTGTTTTTTATCCTGCTTAGTCCCAT
TGCAGCCTTTCTTCCCCCATCACCCGGACCCCTAGCATCATCACGCCCAT
CCCTTCCTGTCTTCTCCTCCTCTTCTGCCTCTGCATCGCCCGAGGGAGAC
TCCCGGCACCAGCAGCACCAGCACCAGCAGCAGCAACACAACCACGTCGA
GTTGCGGGTCTACGACATCGGTGGAAAGTACACGCCAATGATGTCTGCGC
TACTCCGAAAGGAAATGCCTGCAATTTGGCACGTGGGCGTGGGTGTGTAC
GGGAAGGAGTATTGGTTCTCCACACGCATTGAGAGCAAAGACTTGGGAGA
CACAGAGACGGCGTTCGGAATGGTCCCACACGCGACGTATGATCTTGGGC
ACACATTGGTGGAGCGCGAGGCGTTCGAAGCCTATTTAGAGGAGGAGTTG
GATGCTCGATTTAACATTGACACATACAAGGTTTTCACGCATAATTGTAA
TCATTTCAGCCGGGATGCGTTGGCGTTTTTGATGGGGGGGAATGTGGAGA
TGCCCTCCTACATACTCGAAAATTCAGACAAGGCTTTGGATGCCTTGCCG
CAGGGGCAGGCGATGTTGACCAAGACGATTGCTAATCAGGTTGCTAGGGT
GGTAATGCTGGCATGGGGTAACGCCAATAGGAGCAAAGAGGAGATAGCGA
GGCGAGAAGCAAGGAGAAAGACGAAGAAGATCGAGGTGGACGAAGCACAA
GCCAATGGACCAGGAAAGGAAGGGGGGCAGCAGATGGCGTGA
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protein sequence of NO03G05050.1

>NO03G05050.1-protein ID=NO03G05050.1-protein|Name=NO03G05050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MPRLSSSLLFFILLSPIAAFLPPSPGPLASSRPSLPVFSSSSASASPEGD
SRHQQHQHQQQQHNHVELRVYDIGGKYTPMMSALLRKEMPAIWHVGVGVY
GKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEEL
DARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALP
QGQAMLTKTIANQVARVVMLAWGNANRSKEEIARREARRKTKKIEVDEAQ
ANGPGKEGGQQMA*
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Synonyms
Publications