NO03G05050, NO03G05050 (gene) Nannochloropsis oceanica

Overview
NameNO03G05050
Unique NameNO03G05050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length792
Alignment locationchr3:1431307..1432098 +

Link to JBrowse

Properties
Property NameValue
DescriptionPPPDE putative thiol peptidase family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1431307..1432098 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008580PPPDE_dom
Homology
BLAST of NO03G05050 vs. NCBI_GenBank
Match: EWM29939.1 (protein of unknown function DUF862, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 333.6 bits (854), Expect = 5.700e-88
Identity = 176/261 (67.43%), Postives = 196/261 (75.10%), Query Frame = 0
Query:    6 SSLLFFILLSPIAAFLPPSPGPLASSRPSLPVFSSXXXXXXXXXXXXXXXXXXXXXXXXXXXLRVYDIGGKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAMLTKTIANQVARVVMLAWGNANRSKEEIARREARRKTKKIE---VDEAQANGPGKEGGQQMA 264
            SS +  I+  PIAAFLPP P    ++ P+    S+                           LRVYDIGGKYTPMMSALLRKEMPAIWHVG+GV+GKEYWFSTRIESKDLGDTETAFGM PHATY+LG T VER+AFEA+LEEEL +RFNIDTYKVFTHNCNHFSRDALAFL+G  VEMP YILENSD+ALDALP+GQA+LTK+IANQVARVVMLAWG ANRSKE+IARREARRK    E   V+EA+    G E G Q A
Sbjct:   11 SSFVLLIINKPIAAFLPPIPFSATATSPT----SARVTLSSSSALQDDSFPEQGAFQHNKVELRVYDIGGKYTPMMSALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILENSDRALDALPKGQALLTKSIANQVARVVMLAWGTANRSKEDIARREARRKKAMAERDSVEEAEEGRRGVEEGSQPA 267          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: XP_005855163.1 (hypothetical protein NGA_2079000, partial [Nannochloropsis gaditana CCMP526] >EKU21197.1 hypothetical protein NGA_2079000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 330.1 bits (845), Expect = 6.300e-87
Identity = 169/245 (68.98%), Postives = 188/245 (76.73%), Query Frame = 0
Query:    6 SSLLFFILLSPIAAFLPPSPGPLASSRPSLPVFSSXXXXXXXXXXXXXXXXXXXXXXXXXXXLRVYDIGGKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAMLTKTIANQVARVVMLAWGNANRSKEEIARREARRKTKKIEVDEAQ 251
            SS +  I+  PIAAFLPP P    ++ P+    S+                           LRVYDIGGKYTPMMSALLRKEMPAIWHVG+GV+GKEYWFSTRIESKDLGDTETAFGM PHATY+LG T VER+AFEA+LEEEL +RFNIDTYKVFTHNCNHFSRDALAFL+G  VEMP YILENSD+ALDALP+GQA+LTK+IANQVARVVMLAWG ANRSKE+IARREARRK    E D  +
Sbjct:   15 SSFVLLIINKPIAAFLPPIPFSATATSPT----SARVTLSSSSALQDDSFPEQGAFQHNKVELRVYDIGGKYTPMMSALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILENSDRALDALPKGQALLTKSIANQVARVVMLAWGTANRSKEDIARREARRKKAMAERDSVE 255          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: CEL99225.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 162.5 bits (410), Expect = 1.700e-36
Identity = 77/154 (50.00%), Postives = 105/154 (68.18%), Query Frame = 0
Query:   84 LLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVE---MPSYILENSDKALDALPQGQAMLTKTIANQVARVVMLAWGNANRSKEEIAR 235
            L+RK +  IWH G+ VYG+EYWFST IESKD+  TE+AFGM P   +D+G T +++  FE YLE EL  RF++D Y+ FT+NCNH   +AL FL   + E   +P YILE S+  LD +   QA LT+ IA +V+R++M+ W  +NR+KEE  R
Sbjct:    2 LVRKNIETIWHAGLVVYGREYWFSTHIESKDIQHTESAFGMAPTHVHDMGATTIDQRVFEDYLERELAPRFSLDRYETFTNNCNHMIDEALTFLTAPSAEPQRLPYYILEQSETILDNVSDLQADLTRKIATRVSRLIMVGWAKSNRAKEERER 155          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: XP_005792379.1 (hypothetical protein EMIHUDRAFT_417423 [Emiliania huxleyi CCMP1516] >EOD39950.1 hypothetical protein EMIHUDRAFT_417423 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 104.0 bits (258), Expect = 7.300e-19
Identity = 57/139 (41.01%), Postives = 82/139 (58.99%), Query Frame = 0
Query:   68 LRVYDI-GGKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAM 206
            L VYD+ GG    M  ALL  ++  I H GVGV+G+EY+FS  ++ + LG      G+  H T +LG T + RE F+ Y +E   ARF+ D Y +  +NCNHFS +   FL+G  V +P +IL+   +A+ A P GQ +
Sbjct:  261 LYVYDLSGGAARGMAQALLGIDVEIIPHTGVGVFGREYYFSGGVQREPLGAFTAHSGLPVHQTLELGRTSLPREVFDEYCDEVGAARFSADAYSLLENNCNHFSNECAQFLLG--VGIPQHILD-LPRAVLASPMGQML 396          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: EJK67640.1 (hypothetical protein THAOC_11301 [Thalassiosira oceanica])

HSP 1 Score: 103.2 bits (256), Expect = 1.200e-18
Identity = 60/192 (31.25%), Postives = 99/192 (51.56%), Query Frame = 0
Query:   70 VYDIGGKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMP--SYILENSDKALDALPQGQAMLTKTIANQVARVVMLAWGNANRSKEEIARREARRKTKKIEVDEAQANGPGKEGG 260
            +Y+IGG  T ++S ++ K+M  + HVGV VYG E+++S RIE + +   +     +P  T+DLG   + +E  E ++E   D  +  +TY VF  NCN+F     + +  G +  P     +E   K LD LP  +  +      ++ R+++ +WG A R K+EI  R          +D A+A+   K GG
Sbjct:   99 IYEIGGPVTEVLSFMVNKKMALVPHVGVRVYGMEWFYSNRIEHEPVEVMDKMLEGMPSVTFDLGRATLSKEEVEEWIESVND-EWVAETYDVFNRNCNNFGILMASEISEGGIPEPYGQATIETMTKLLDNLPNWRKEMGLHFMTKITRLIVSSWGRATRDKKEITAR---------NLDLAKADADTKTGG 280          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: XP_005761597.1 (hypothetical protein EMIHUDRAFT_471030 [Emiliania huxleyi CCMP1516] >XP_005763995.1 hypothetical protein EMIHUDRAFT_465005 [Emiliania huxleyi CCMP1516] >EOD09168.1 hypothetical protein EMIHUDRAFT_471030 [Emiliania huxleyi CCMP1516] >EOD11566.1 hypothetical protein EMIHUDRAFT_465005 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 102.4 bits (254), Expect = 2.100e-18
Identity = 56/163 (34.36%), Postives = 94/163 (57.67%), Query Frame = 0
Query:   71 YDIGGKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMP--SYILENSDKALDALPQGQAMLTKTIANQVARVVMLAWGNANRSKEE 232
            Y+IGG  T ++S  + K++P I HVG+ V+G EY++S  IE + +             T DLG +L+ ++  E  L   L+A ++ D Y VF  NC HFS    A +  G +  P    +L+ S++ LD+LP+ +  L + + N+V R+V+++WG A++ K+E
Sbjct:  121 YEIGGPLTSVLSTSVAKQLPMIPHVGIRVHGVEYFYSDHIECRTV-------------TIDLGPSLLGKDEVEG-LVGSLEATWDADAYHVFDKNCVHFSDALAARVSEGGLPQPLVQGVLDVSERMLDSLPEWRRALGRRVMNEVTRLVVVSWGKASKEKKE 269          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: ONK79587.1 (uncharacterized protein A4U43_C01F7890 [Asparagus officinalis])

HSP 1 Score: 99.4 bits (246), Expect = 1.800e-17
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 0
Query:   68 LRVYDIG-GKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAML 207
            L +YD+  G      ++LL K + AIWH GV VYG EY+F   I+    G   T +G  P    DLG T V +E FE YL +E+ +R+  +TYK+ +HNCN+FS +   FL+G ++  P YIL+  ++ L++ P G  +L
Sbjct:  138 LNMYDLSQGLARQFSTSLLGKAIEAIWHTGVVVYGNEYYFGGGIQHNPAG--RTPYG-TPMRVIDLGVTHVPKEVFEEYL-QEISSRYTAETYKLLSHNCNNFSNEVAHFLVGTSI--PEYILQLPNEVLNS-PMGALIL 270          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: XP_020276939.1 (desumoylating isopeptidase 1 [Asparagus officinalis])

HSP 1 Score: 99.4 bits (246), Expect = 1.800e-17
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 0
Query:   68 LRVYDIG-GKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAML 207
            L +YD+  G      ++LL K + AIWH GV VYG EY+F   I+    G   T +G  P    DLG T V +E FE YL +E+ +R+  +TYK+ +HNCN+FS +   FL+G ++  P YIL+  ++ L++ P G  +L
Sbjct:   16 LNMYDLSQGLARQFSTSLLGKAIEAIWHTGVVVYGNEYYFGGGIQHNPAG--RTPYG-TPMRVIDLGVTHVPKEVFEEYL-QEISSRYTAETYKLLSHNCNNFSNEVAHFLVGTSI--PEYILQLPNEVLNS-PMGALIL 148          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: XP_012830256.1 (PREDICTED: desumoylating isopeptidase 1 [Erythranthe guttata] >EYU46335.1 hypothetical protein MIMGU_mgv1a012018mg [Erythranthe guttata] >EYU46336.1 hypothetical protein MIMGU_mgv1a012018mg [Erythranthe guttata])

HSP 1 Score: 99.0 bits (245), Expect = 2.400e-17
Identity = 56/140 (40.00%), Postives = 81/140 (57.86%), Query Frame = 0
Query:   68 LRVYDIG-GKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAML 207
            L VYD+  G    + +  L K + AIWH GV VYG EY+F   I+S  +G   T +G  P    DLG T V ++ FE YL +E+  R+  +TY + THNCN+FS +   FL+G ++  P YIL   ++ +++ P G  ML
Sbjct:   10 LNVYDLSQGLARQLSTTFLGKAIEAIWHTGVVVYGHEYYFGGGIQSAPVG--TTPYG-TPLRVVDLGLTHVPKDVFEMYL-QEIGPRYTAETYSLMTHNCNNFSNEVAQFLVGASI--PDYILNLPNEVMNS-PMGPLML 142          
BLAST of NO03G05050 vs. NCBI_GenBank
Match: XP_011083128.1 (desumoylating isopeptidase 1 [Sesamum indicum])

HSP 1 Score: 99.0 bits (245), Expect = 2.400e-17
Identity = 57/140 (40.71%), Postives = 79/140 (56.43%), Query Frame = 0
Query:   68 LRVYDIG-GKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAML 207
            L VYD+  G    + +  L K +  IWH G+ VYG EY+F   I+S  +G   T +G  P    DLG T V ++ FE YL +E+  RF  +TY + THNCN+FS +   FL+G  V +P YIL   ++ L + P G  ML
Sbjct:   10 LNVYDLSQGLARQLSTTFLGKAIEGIWHTGIVVYGNEYYFGGGIQSAPVG--TTPYG-TPIRVVDLGVTHVPKDVFEMYL-QEIGPRFTAETYSLLTHNCNNFSNEVAQFLVGAPV-VPEYILNLPNEVLSS-PMGALML 143          
The following BLAST results are available for this feature:
BLAST of NO03G05050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29939.15.700e-8867.43protein of unknown function DUF862, eukaryotic [Na... [more]
XP_005855163.16.300e-8768.98hypothetical protein NGA_2079000, partial [Nannoch... [more]
CEL99225.11.700e-3650.00unnamed protein product [Vitrella brassicaformis C... [more]
XP_005792379.17.300e-1941.01hypothetical protein EMIHUDRAFT_417423 [Emiliania ... [more]
EJK67640.11.200e-1831.25hypothetical protein THAOC_11301 [Thalassiosira oc... [more]
XP_005761597.12.100e-1834.36hypothetical protein EMIHUDRAFT_471030 [Emiliania ... [more]
ONK79587.11.800e-1740.00uncharacterized protein A4U43_C01F7890 [Asparagus ... [more]
XP_020276939.11.800e-1740.00desumoylating isopeptidase 1 [Asparagus officinali... [more]
XP_012830256.12.400e-1740.00PREDICTED: desumoylating isopeptidase 1 [Erythrant... [more]
XP_011083128.12.400e-1740.71desumoylating isopeptidase 1 [Sesamum indicum][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005376NSK005376Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05050.1NO03G05050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573188gene_1712Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100510g2gene701Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05050.1NO03G05050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05050 ID=NO03G05050|Name=NO03G05050|organism=Nannochloropsis oceanica|type=gene|length=792bp
ATGCCAAGGCTGTCGTCCTCTCTCCTGTTTTTTATCCTGCTTAGTCCCAT
TGCAGCCTTTCTTCCCCCATCACCCGGACCCCTAGCATCATCACGCCCAT
CCCTTCCTGTCTTCTCCTCCTCTTCTGCCTCTGCATCGCCCGAGGGAGAC
TCCCGGCACCAGCAGCACCAGCACCAGCAGCAGCAACACAACCACGTCGA
GTTGCGGGTCTACGACATCGGTGGAAAGTACACGCCAATGATGTCTGCGC
TACTCCGAAAGGAAATGCCTGCAATTTGGCACGTGGGCGTGGGTGTGTAC
GGGAAGGAGTATTGGTTCTCCACACGCATTGAGAGCAAAGACTTGGGAGA
CACAGAGACGGCGTTCGGAATGGTCCCACACGCGACGTATGATCTTGGGC
ACACATTGGTGGAGCGCGAGGCGTTCGAAGCCTATTTAGAGGAGGAGTTG
GATGCTCGATTTAACATTGACACATACAAGGTTTTCACGCATAATTGTAA
TCATTTCAGCCGGGATGCGTTGGCGTTTTTGATGGGGGGGAATGTGGAGA
TGCCCTCCTACATACTCGAAAATTCAGACAAGGCTTTGGATGCCTTGCCG
CAGGGGCAGGCGATGTTGACCAAGACGATTGCTAATCAGGTTGCTAGGGT
GGTAATGCTGGCATGGGGTAACGCCAATAGGAGCAAAGAGGAGATAGCGA
GGCGAGAAGCAAGGAGAAAGACGAAGAAGATCGAGGTGGACGAAGCACAA
GCCAATGGACCAGGAAAGGAAGGGGGGCAGCAGATGGCGTGA
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protein sequence of NO03G05050.1

>NO03G05050.1-protein ID=NO03G05050.1-protein|Name=NO03G05050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MPRLSSSLLFFILLSPIAAFLPPSPGPLASSRPSLPVFSSSSASASPEGD
SRHQQHQHQQQQHNHVELRVYDIGGKYTPMMSALLRKEMPAIWHVGVGVY
GKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEEL
DARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALP
QGQAMLTKTIANQVARVVMLAWGNANRSKEEIARREARRKTKKIEVDEAQ
ANGPGKEGGQQMA*
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Synonyms
Publications