NO03G05010, NO03G05010 (gene) Nannochloropsis oceanica

Overview
NameNO03G05010
Unique NameNO03G05010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2226
Alignment locationchr3:1422068..1424293 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1422068..1424293 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO03G05010 vs. NCBI_GenBank
Match: ETP37099.1 (hypothetical protein F442_15095, partial [Phytophthora parasitica P10297])

HSP 1 Score: 83.6 bits (205), Expect = 2.500e-12
Identity = 58/139 (41.73%), Postives = 78/139 (56.12%), Query Frame = 0 
Query:  112 LALFVAFVGLVRSVLSSQAIFYLV-LWVASLTTMASMT-------YQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSD 243
            L +  A   L+   LS +A   LV L  ASL  + S +        + +R RGL+ +LP S QELLLQTSLL+WL DTS +D++ P+    + L   E+  L+  +PP  Q  +T PGLL  LP SVQ+ LLP    SD
Sbjct:  115 LTVTFALTVLLTEFLSRRATLALVALAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPKSLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNALLPAEDSSD 253
[Close]
BLAST of NO03G05010 vs. NCBI_GenBank
Match: XP_009516806.1 (hypothetical protein PHYSODRAFT_309854 [Phytophthora sojae] >EGZ29531.1 hypothetical protein PHYSODRAFT_309854 [Phytophthora sojae])

HSP 1 Score: 82.8 bits (203), Expect = 4.300e-12
Identity = 56/133 (42.11%), Postives = 76/133 (57.14%), Query Frame = 0 
Query:  112 LALFVAFVGLVRSVLSSQAIFYLV-LWVASLTTMASMT-------YQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLP 237
            L +  A   L+   LS +A+  LV L  ASL  + S +        +  R RGL+ +LP S QELLLQTSLL WL DTS +D++ P+    + L+  E+  L+  +PP  Q  LT PGLL  LP S+Q +LLP
Sbjct:  118 LTVSFALTVLLTEFLSRRAMLALVTLAYASLGLLYSWSVPIWKWYQEEARTRGLIGFLPQSAQELLLQTSLLKWLTDTSFSDKVAPFLPFLLPLSRAEQMRLMEQMPPESQMMLTKPGLLPLLPDSMQKVLLP 250
[Close]
BLAST of NO03G05010 vs. NCBI_GenBank
Match: XP_002907769.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY64333.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 81.6 bits (200), Expect = 9.500e-12
Identity = 55/136 (40.44%), Postives = 78/136 (57.35%), Query Frame = 0 
Query:  112 LALFVAFVGLVRSVLSSQAIFYLVLWV-ASLTTMASMT-------YQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGG 240
            L +  A   L+   LS +A+  LV  V ASL  + S +        + +  RGL+ +LP S QELLL+TSLL+WL DTS +D++ P+    + L   E+  L+  +PP  Q  +T PGLL  LP SVQ++LLP  G
Sbjct:  113 LTVTFALTVLLTEFLSRRAMLALVALVYASLGLLYSWSVPIWKWYQEEMHTRGLVGFLPDSMQELLLRTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLMEQMPPESQVMMTKPGLLPLLPDSVQNVLLPAAG 248
[Close]
BLAST of NO03G05010 vs. NCBI_GenBank
Match: XP_008609067.1 (hypothetical protein SDRG_05146 [Saprolegnia diclina VS20] >EQC37547.1 hypothetical protein SDRG_05146 [Saprolegnia diclina VS20])

HSP 1 Score: 77.8 bits (190), Expect = 1.400e-10
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 0 
Query:  152 VRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSDAGGMLM 249
            V E GL+ YLP S Q +LLQT+LL+WL DTS  D ++ Y    M L+  E+  ++ SLP  +Q  L  PGLL+ LP +VQ  LLP      +G +++
Sbjct:  160 VCEHGLMAYLPESLQTMLLQTTLLEWLTDTSFFDSMQKYLPFLMPLSLAEQQRVVRSLPADDQARLLKPGLLHLLPETVQETLLPETTSEHSGEIIV 256
[Close]
BLAST of NO03G05010 vs. NCBI_GenBank
Match: XP_012203058.1 (hypothetical protein SPRG_20597 [Saprolegnia parasitica CBS 223.65] >KDO26266.1 hypothetical protein SPRG_20597 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 77.4 bits (189), Expect = 1.800e-10
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 0 
Query:  152 VRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLP 237
            V E GL+ YLP S Q +LLQT+LL+WL DTS  D ++ Y    M L+  E+  ++ SLP  +Q  L  PGLL+ LP +VQ  LLP
Sbjct:  162 VCEHGLIAYLPESLQTMLLQTTLLEWLTDTSFFDSMQKYVPFLMPLSLAEQQRVVRSLPADDQARLLKPGLLHLLPDAVQETLLP 246
[Close]
BLAST of NO03G05010 vs. NCBI_GenBank
Match: GAX94555.1 (Hypothetical protein PINS_002471 [Pythium insidiosum])

HSP 1 Score: 75.1 bits (183), Expect = 8.900e-10
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 0 
Query:  155 RGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSDAGG 246
            +GL+T LP S Q LLL+T+LL+WL DT+  D+L+P+    + L++ E++ ++  LP   Q  LT PG++  LP  VQ +LLP     D  G
Sbjct:  405 KGLVTLLPESVQHLLLRTTLLEWLTDTTFMDKLRPFLPFLLPLSKAEQNRVLEQLPVETQLMLTRPGMVTLLPDGVQRVLLPASTTGDDDG 495
[Close]
BLAST of NO03G05010 vs. NCBI_GenBank
Match: OQS02842.1 (hypothetical protein THRCLA_12217 [Thraustotheca clavata])

HSP 1 Score: 74.3 bits (181), Expect = 1.500e-9
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 0 
Query:  156 GLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLP 237
            GL+ +LP S Q +LLQT+LL+WL DT+  D ++ Y    M L+  E+  ++ SLPP  Q  +  PGL++ LP+S Q  LLP
Sbjct:  172 GLIVHLPESLQTMLLQTTLLEWLTDTTFFDNMQKYMPFLMPLSPTEQQRVVRSLPPESQEMMLKPGLIHLLPSSFQDALLP 252
[Close]
BLAST of NO03G05010 vs. NCBI_GenBank
Match: XP_009831363.1 (hypothetical protein H257_07511 [Aphanomyces astaci] >ETV79522.1 hypothetical protein H257_07511 [Aphanomyces astaci])

HSP 1 Score: 73.9 bits (180), Expect = 2.000e-9
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 0 
Query:  152 VRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLP 237
            VR  GL+ +LP   Q+ LL+ +LL+WL DTS AD+L+ Y    + LN  E+  ++ SLP   Q  +  PGL++ LP+++Q +LLP
Sbjct:  202 VRRHGLVAFLPAGLQDTLLRMTLLEWLTDTSFADKLRDYFPFFLPLNNVEQQRVVHSLPCDTQTMMHTPGLVHLLPSALQDVLLP 286
[Close]
BLAST of NO03G05010 vs. NCBI_GenBank
Match: XP_009831364.1 (hypothetical protein, variant 1 [Aphanomyces astaci] >XP_009831365.1 hypothetical protein, variant 2 [Aphanomyces astaci] >ETV79523.1 hypothetical protein, variant 1 [Aphanomyces astaci] >ETV79524.1 hypothetical protein, variant 2 [Aphanomyces astaci])

HSP 1 Score: 73.9 bits (180), Expect = 2.000e-9
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 0 
Query:  152 VRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLP 237
            VR  GL+ +LP   Q+ LL+ +LL+WL DTS AD+L+ Y    + LN  E+  ++ SLP   Q  +  PGL++ LP+++Q +LLP
Sbjct:  202 VRRHGLVAFLPAGLQDTLLRMTLLEWLTDTSFADKLRDYFPFFLPLNNVEQQRVVHSLPCDTQTMMHTPGLVHLLPSALQDVLLP 286
[Close]
BLAST of NO03G05010 vs. NCBI_GenBank
Match: OQR86188.1 (hypothetical protein ACHHYP_10835 [Achlya hypogyna])

HSP 1 Score: 73.2 bits (178), Expect = 3.400e-9
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 0 
Query:  154 ERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLP 237
            ERGL+ +LP   Q LLL+T+LL+WL DTS  + ++ Y    M L+  E+  ++ SLP   Q  L  PGL+N LP  VQ  LLP
Sbjct:  169 ERGLIAHLPEGLQTLLLRTTLLEWLTDTSFFESMQKYLPFLMPLSAPEQQRVVRSLPSESQAMLVKPGLINLLPDVVQDALLP 251
The following BLAST results are available for this feature:
BLAST of NO03G05010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ETP37099.12.500e-1241.73hypothetical protein F442_15095, partial [Phytopht... [more]
XP_009516806.14.300e-1242.11hypothetical protein PHYSODRAFT_309854 [Phytophtho... [more]
XP_002907769.19.500e-1240.44conserved hypothetical protein [Phytophthora infes... [more]
XP_008609067.11.400e-1043.30hypothetical protein SDRG_05146 [Saprolegnia dicli... [more]
XP_012203058.11.800e-1048.24hypothetical protein SPRG_20597 [Saprolegnia paras... [more]
GAX94555.18.900e-1041.76Hypothetical protein PINS_002471 [Pythium insidios... [more]
OQS02842.11.500e-944.44hypothetical protein THRCLA_12217 [Thraustotheca c... [more]
XP_009831363.12.000e-942.35hypothetical protein H257_07511 [Aphanomyces astac... [more]
XP_009831364.12.000e-942.35hypothetical protein, variant 1 [Aphanomyces astac... [more]
OQR86188.13.400e-945.78hypothetical protein ACHHYP_10835 [Achlya hypogyna... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005381NSK005381Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05010.1NO03G05010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627006gene_1708Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100351g7gene705Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05010.1NO03G05010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05010 ID=NO03G05010|Name=NO03G05010|organism=Nannochloropsis oceanica|type=gene|length=2226bp
ATGTCACAATGCAAGCGGCTCCTAGACGATTCGGGAGACGGTGGGCCGCG
AGCTTCATCAACAGCAGCAGCAGAGGTCGGGGCAGCGGGGGGAGATGGGC
AGCAGCAGCAGCAACAGCAAAACGGAGGAGGCCAGATGTCCGACACAACA
ACTACAGTTAGAAGCAGCACCACCAACAACGGCAGAGGCCTTATGACACG
CCGACAGGGCGACGGGCAAGGCAGTGGAAACAATTGGGGTGGGAACGACG
AAGAGGAGGATGGGCAAGGGGAAGAGCGCCCGTGGGTGCCAGGGGAGGAA
CTAAGGTATTGGGCCGTGACTCGAACACTGCGTCTCGCACTCTTCGTGGC
GTTCGTGGGCTTGGTACGCTCTGTCTTATCGTCGCAGGCCATATTCTACC
TCGTCCTGTGGGTGGCGTCTCTGACGACCATGGCCTCGATGACTTACCAA
CGTGTGCGGGAACGAGGCCTGCTCACCTACCTGCCCCCCTCGACCCAAGA
ACTCCTCCTGCAGACCTCGCTGCTGGACTGGCTCCTCGACACATCCATGG
CTGATCGTCTGAAGCCATATGCCGTCATCGGGATGGGATTGAATGAGGAG
GAACGCTCCTTTCTCATCAGCAGTCTTCCTCCACCGGAGCAACGAGCTTT
GACGGCGCCTGGTTTATTGAACACCTTGCCGGCTTCCGTGCAAAGCATGC
TCCTGCCACGCGGTGGTTGCAGCGATGCCGGTGGCATGCTCATGTCAGGA
GGGAACGCATGTGTACCGGCAACACCAGCTGCGGCATGTATCGCGACTGC
TGCTTCTGCTGGAGGTGGAGGAGAGGGGAGGGAAGGATGGCGACATCGCA
TTGAGGAGATCAGTGAGATGCAAGCCGCGGAGATGACCCGTCGACGACTA
CAAGAAATGGACGAGCGACGACAGCGGGAGGAAGGGAGGGAGGGAGAGGA
GGAAGCGGAGGAAGTGATGACGGCATCTGAGACAGACGAAGAGGACGAGT
ACCTGGACGAGCAGGAGGACGGGGGGGAGAGCGGGCGGAGGAGTAGTAAT
CGGATGACGCATCAGTTGCCGCGACAGGTGGGCATGGCTATGGGCAGAAA
TCCGCAGCGGCGAACACCACAGCAAGGCAACGGCCTCCGGCCGGCTTTTC
CCCTCTCCTCTACCTCCTACCACCACCACCACCAGCAAAACAGCAGCAGC
AGGAACACCCGCACCCTCACCACCGACACTACCACCCAATCTCCTCCTCC
TCCTCCTCTTTCTCGGCCAGTGTCAGAAAGCTGGCCCGCTCCCGGGGAAG
TTGAAGATGTCGCTGCCTACGTTCTTCAACGGCGCCTCCGCCGCGCCTGG
GAGCAAGCGGTGCGAGGAAGCGCAGATGCGATCGTCAGTGGAGTAACAGC
CAGCTTGAGAAGGCAATTGAGGGATAGACGGCAGGGGTTAGTATACGGAG
GGGTGGCCTTGGCGGGGGGGGCGGTAGTGGCGCAGATTTGGCGAGGGAGG
GGAGGGGGGGCGGGAGGGGTAGTGCAGCGGTATGGGCGGATGGCAGTTTT
AGCAGGGACGGTGGTCTTGGCTTTGCATGATGCATATTTTGCCTCAAAGG
AGGAGGAGGAAGAGGGGGAGGAGGAGGAGGAGGAAAGTGCAGAGGGATTA
TGGGAGGAGGAGGAGGGCGAGGAGGGCTTGCTTGGCGCTGATTTTGCCGC
TGGTGTGAGCATGGGCCAACAACGACGAGGACGAGGACGAGGACAAGGAC
GACCTCGACAACAGCAGCCTCGGGTATGGATGCAGTGGGGGGCTTTCTTT
TTCCTCCTCCTCCTCATTCGCACCGGTCGCCTGGCGCCGATATTGCGGCG
TTTGCGGGCGGCCTTTCCGGCTTCCTTCCCCTCGTCCTCCTCGTCTTCCT
CCTCCTCCTCCTTGCTGTTGGGTGCGAGCGGACGGAGGTAGACATAGGGA
ATGATAAATATTGGATTCGTATGTATGTGTAGGTGGGAAGATGTGAATAA
TCAAAAGAAACGACACGACAGCTTTTGCCGTTACGCGCATTGAGGGTGCT
TCCCAACCATGCCGTCTGCAGTATGTGCCTGCCATGACCCAGCGAGTCAC
CCGAGCAATCAAAGTATTTTCAGGCGAGGGAGAAAGGAAAAGACGAGCTC
CACTTCGCACAGGCGTGGCCCTCGTTTGCGGGCAACAAAAGAAAGAAAGA
GGGAGACGCGCGTTCAGCGAGACAAA
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protein sequence of NO03G05010.1

>NO03G05010.1-protein ID=NO03G05010.1-protein|Name=NO03G05010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=647bp
MSQCKRLLDDSGDGGPRASSTAAAEVGAAGGDGQQQQQQQNGGGQMSDTT
TTVRSSTTNNGRGLMTRRQGDGQGSGNNWGGNDEEEDGQGEERPWVPGEE
LRYWAVTRTLRLALFVAFVGLVRSVLSSQAIFYLVLWVASLTTMASMTYQ
RVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEE
ERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSDAGGMLMSG
GNACVPATPAAACIATAASAGGGGEGREGWRHRIEEISEMQAAEMTRRRL
QEMDERRQREEGREGEEEAEEVMTASETDEEDEYLDEQEDGGESGRRSSN
RMTHQLPRQVGMAMGRNPQRRTPQQGNGLRPAFPLSSTSYHHHHQQNSSS
RNTRTLTTDTTTQSPPPPPLSRPVSESWPAPGEVEDVAAYVLQRRLRRAW
EQAVRGSADAIVSGVTASLRRQLRDRRQGLVYGGVALAGGAVVAQIWRGR
GGGAGGVVQRYGRMAVLAGTVVLALHDAYFASKEEEEEGEEEEEESAEGL
WEEEEGEEGLLGADFAAGVSMGQQRRGRGRGQGRPRQQQPRVWMQWGAFF
FLLLLIRTGRLAPILRRLRAAFPASFPSSSSSSSSSSLLLGASGRR*
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Synonyms
Publications