NO03G04970, NO03G04970 (gene) Nannochloropsis oceanica

Overview
NameNO03G04970
Unique NameNO03G04970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1193
Alignment locationchr3:1413915..1415107 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1413915..1415107 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO03G04970 vs. NCBI_GenBank
Match: EWM29933.1 (hypothetical protein Naga_100351g3 [Nannochloropsis gaditana])

HSP 1 Score: 126.7 bits (317), Expect = 9.600e-26
Identity = 94/233 (40.34%), Postives = 122/233 (52.36%), Query Frame = 0 
Query:   17 SGVGKAPLKMGMTGVAATIGSLDAYVVPMTRYVAPPXXXXXXXXXXXXXXXXXXXXPTYRSTNTAKALPRSSGSQKSKPAAVAAAV------ITEAPTP----SAPTSATEA--LSTDWLVERLHGGHGRVDAQASWDARRTEKLTVTDVALFNKRRILGQQAKARQPGWRVQGNKRVFVAYTGAGMQVAEGAEAFKLSVAFGKKKTKR--------VGAGDGEAGKPCVSKG 230
            SG  KA L+    GVA+  G++DA++VP  R                                         GS+ S+P++    V      I  +  P    S   S+T A  +S DWLV RL+ G G+ DAQASWDAR  E+LT TDV L NKRR +G Q+K ++ GWRVQG+ +VFVAYTGAG+QVAEGAEAF+LS+A+GKK+ KR          A DG  G     +G
Sbjct:   21 SGPTKAKLRK-QDGVASNKGAIDAFLVPRPR----------------------------------------DGSKTSRPSSPVQCVSPTLSPIDGSTVPDNLNSIDNSSTRASQVSPDWLVRRLNDGQGQADAQASWDARSKERLTATDVTLINKRRAMGCQSK-KKSGWRVQGDTKVFVAYTGAGVQVAEGAEAFRLSMAYGKKRGKRKKDGKDVNEKAADGSRGHKASQRG 211
The following BLAST results are available for this feature:
BLAST of NO03G04970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29933.19.600e-2640.34hypothetical protein Naga_100351g3 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005385NSK005385Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04970.1NO03G04970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562441gene_1704Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100351g3gene709Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04970.1NO03G04970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04970 ID=NO03G04970|Name=NO03G04970|organism=Nannochloropsis oceanica|type=gene|length=1193bp
CCCCACAGCGCCGTCCCGGAGGCTCGAGCACCCCCTATCGACATGCACGT
TGCCTCTCTGTATCATACTCTGCAGACATCCTATGAGGCGCACACGTTAT
TGAGGTCTAGATCGCCTATAGAAACGTGTAATATTCTAAGTCGCACTGCT
TGCAGCACACAGCAGCCTGCTGGCCGCTGGCATCATCATCGCCGTGATGA
TCCTATCCCTTGATCCTTTTTATTTTTGAACACCCTCTACCCTGACCTGA
CACGTAGACACATACTATCATCCACCCACGCACAACCTCACACGCACACA
CACAGGCAGCTTTCCCGTCCTGTCCAACCTGGAGTGTCCCGACGTTATCG
AATCGCCGACAATCGCGCCATGGTGAGGCACGCCATCCGTCGGGAGAAAA
ACCCCGTGCCCCGCCCCAGCGGCGTTGGCAAAGCCCCACTAAAGATGGGA
ATGACTGGGGTTGCCGCTACAATAGGTTCTCTTGATGCTTATGTTGTGCC
GATGACGCGATATGTCGCCCCGCCTCCGCTGCCGCCGGAGCCCCAAAAGC
CCAAGCCTAAGGCATCAGTCGCAGCCGCAAGCAAACCAACGTACCGCAGC
ACCAACACCGCTAAAGCCTTGCCGCGTTCCTCCGGGTCGCAAAAGTCGAA
GCCAGCAGCAGTTGCAGCCGCAGTAATCACCGAGGCTCCCACACCCTCGG
CTCCCACCTCTGCTACCGAAGCCTTGTCCACAGACTGGCTCGTGGAACGA
CTACACGGTGGGCATGGTCGAGTGGATGCTCAGGCATCGTGGGATGCACG
TCGCACAGAAAAACTGACAGTGACGGACGTGGCGTTGTTCAACAAGCGGC
GCATTCTGGGACAGCAGGCCAAAGCGCGTCAGCCCGGGTGGCGTGTACAG
GGGAATAAGCGAGTGTTTGTGGCGTATACGGGGGCGGGCATGCAGGTGGC
GGAGGGGGCAGAGGCATTTAAATTGAGTGTGGCCTTTGGGAAGAAAAAGA
CGAAACGAGTGGGTGCTGGAGATGGAGAAGCGGGGAAGCCATGTGTGAGC
AAGGGGAAGAAGAAGGGTAAAAGCGACACGTACAGCTAGAGTCAGCAGGT
AATGCAAGTGTATGCATGGACGTGAGCATAGATAATTATTTGTACATTTA
TACAGCGACAACGTGAAGAAACAATGTATGCCCCGAGACTGAT
back to top

protein sequence of NO03G04970.1

>NO03G04970.1-protein ID=NO03G04970.1-protein|Name=NO03G04970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MVRHAIRREKNPVPRPSGVGKAPLKMGMTGVAATIGSLDAYVVPMTRYVA
PPPLPPEPQKPKPKASVAAASKPTYRSTNTAKALPRSSGSQKSKPAAVAA
AVITEAPTPSAPTSATEALSTDWLVERLHGGHGRVDAQASWDARRTEKLT
VTDVALFNKRRILGQQAKARQPGWRVQGNKRVFVAYTGAGMQVAEGAEAF
KLSVAFGKKKTKRVGAGDGEAGKPCVSKGKKKGKSDTYS*
back to top
Synonyms
Publications