NO03G04950, NO03G04950 (gene) Nannochloropsis oceanica

Overview
NameNO03G04950
Unique NameNO03G04950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4819
Alignment locationchr3:1406578..1411396 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1406578..1411396 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008972Cupredoxin
Homology
The following BLAST results are available for this feature:
BLAST of NO03G04950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005387NSK005387Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04950.1NO03G04950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573138gene_1702Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04950.1NO03G04950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04950 ID=NO03G04950|Name=NO03G04950|organism=Nannochloropsis oceanica|type=gene|length=4819bp
ACAGATATAGGGCGAGCTTTCTCATCTGATTTTGAAAGCTCCTTTTCCCC
AGGGCTTTCACCTCCGGAAGACCAAAAATTGTCGAGGCTGCCAAAAAAGA
GCAGCAAGCCTCTTGCTCCCACATCTACATGGGGCGCAGGAGCGGGAATA
GCACTGTCCCACAGCAGCAACTTCCCCACCTACAGCAACAACAGCAGCAG
TCCAAAGTGGTGGTAGAAGTCAAGATCCAGGGACGTCAATTTGTGCCCAG
TTCCTTGATCCTGGTGCAAGGGCAGACGGTGGGATGGGTGAACGAAGAGT
ACGACACAAAGACCCCCCATGTCATTCACATCAAGCCCACCCCGGGGACA
ATCGCCAACAACAGCAATACCATGGTCATCGGAAGAAACAGAAGGAACAA
CACCGAAGCGGAGGCAGTAGCGGCGACGGCTGCTTTAGAGGCAATGGCCT
GGTCCTCGTCGAGTGCGTTGGAGCCAGGTGATGGCTTCGAGCACACTTTC
ACGCATCCTGGGATTTATATCTGCAAGAGTCCAAGCGTGCCGACGATGCG
GTGTCGTATTGAGGTGCTACCGCGGGAAGATATGGAGAATGACAAGATGG
ACACGAGGGAAGTAAGGCATCCGTCGTACAAGGAGAAATCTGCGCAGCAA
CATTGGCAACAGCATCAGCCGCAGCTTGAAAAGAGTGGGAAGGGAGAAGT
GGGGCTGATGGAGGAGGGAGAAGAGTCATGCATACTTTCGGGGACGATGA
CTGTGCCTAGCAGCAACTACAATCCCGTCAGAACCACCAGGCAAACTACT
CGTCTCCTCACGAGTACTACTTTCATCCATGAGGCGCCCTTTTATTGCCC
TTCCTCCCCTTCCCACTCAAGGGCAATGGAGAATGTGCCCGCGGACTGTG
TCGCCATCGACGTTCTTCCTGAAGAGCCTTGCTTCGCGCCTTCTGCTTTC
TCCCCCCCCTCCCGGACCCCGACCTCCTCCGCCTATCAGCCTCCGCCATC
GCCACTACCACCGTCATCACCGCGACGGAATGTATCCAAGGGGACATCTA
CCCTTATTCCTTCTTCCTCATGCCTCCATAGCGAAGGACCAATACGGGTC
CCTTCGCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCTTCCCTCTCTGCATCCGCTTCTCCACCTTCGCGCA
GCAGCAGCAGCGGTATGGAAAAGGAAGAGCAGCGACAAGCCGAGCCGCAA
CTACATGCACTGGTGAAAGAGGGCTGTACCAGCAACAGCACCAGCGCTAC
TGCTGCAGGCGGGAACCATTCAAGAGAAAAATGGAAGAAAAAGGCGGAGC
ATTCCATTCGTATCTCAAATTTTCAGTTCGTGCCGTCCTCTCTCACGGTT
GGCGTTGGCGACACCGTCACGTGGAAGGTCGATGACGATGCGATGGGCTG
TCAAGAACACGTCATCCAGGGCTTGGTGTCCCCCCCTCCCACCCCCTCTC
CTCCCTCAATTTCCTCCCAAGGAGCGGAACTCGGGGTTTATTGTTTATTG
TTTGAGTCTCCACCGTTACAGAGGGGCGAGACATGGATGTTAGAGCTGAC
CGAGACCACCACCGGCTTTACAAGGACCATGATCGAAGGAGGAGGTAAGG
TGCTTCTCCGCTGTCAAAACTACCCGGAAGACCTGAGGGGGGTTCTGGAG
GTGCGGCCTTCTCTCCCGCCCTCGTCCTTGCTGAAGGAGGAGGGAGGGAA
GGAGGGAGGTGGTTTGGTGGATGATATGGCTGTAGGAAATGGAGAAGGAG
GACAAGGAGGAAGGAAGAGGAAAAAGAGAAAGAAGCGGAGGAAGGGTGGG
AAGCATGAAGAGGACGAATGGGATGGAGTGAAGCTGGAAGGGAAGGAGGG
AGAGACGAGTGGTACAGCTGCTGCTGCTTTCAGCACTGTGACGAAGCAGG
AGGAGGAGAATCTGTTTATGCCCTGTAGCATCACCAGCGTCAACAACAAC
CACAGCAGCGGCAACGGCAGCAGCAGCTCCATGGGGCCTTTTGATCCAGG
AGAAACGGGGAGCATAACGACTACAGATGTCGGCTTCCCTCCTCTCCGCA
CCTGCACCAGCGCCAAGCCCAGGAAACCTTTCTTCTCCAGCATTAATAAC
AGCAATAAGACAATCAACAATTACGACATCACCACCTCTCCTACTACCAC
CACCACTGGCCCCTATTCCACCTCCGCCTTCACCCCCCTCCCTTCCTCCT
CCCTCTCCCTCCTCGCCCTGACCAAGATGGCGAAAGACGGTCTCCATCCC
CTTTGGGCCCCTGAGGGATTAACCCTTCCCCGCGTCCAGCTAACGCATGA
GACGTTACTGGGGACCGAGGTCGTTACAGTGCCCGTTGGAACAACGGTCG
AATGGGTCCTCCACCTCCCCACCAAGCGAGTCCTCCCTTCCTGCTCCTCC
TCCTTCAACTCCTCGCAACAGCAGCAGAAGCAGCAGCAGTTGCATCGTCT
GATCGTGGGGTTGAATAAATTCCACGATGGTCAAGGAAAAGGAGGTGCCG
CCCCTGTCCGTCTAGCCTCCTGCCCTCGTCCCGGAGATGTCTTTTCTTTT
CTGCCTGGGAGGGAGGGAGGGAGGGAGGGGGGGAGGGAAAGGCAACTGGA
ACTATTTTGCCATACGTTTAAGGAAGAGGGGATGCATATTGTGGCATGCG
AAGTGGTCGGCGCGCTTATGTGCGGTATCAAGGTAGTGCATCCGCTCCCT
TCCTCGCTGTCCTCCTCGTCTTTTTCCTCCGTCCTCCTCCCACACGCCAA
CAAGCTGTATACCCTTAAGGATGCCCTCCCTCCCTCCCTCGCTATGGCCC
CTGCGATTACCTTTTATGGAAATCAGAGGCAGAAGGTAGTGCTGGGGAAT
GCAGAGGGGTACTTCCAGGCTTCGGATGACGATGAGGAGGAGGAGGAGGA
CGGGAGGGAGGAAGGGGAGGAGGACATGGTGGATTTGGAGGCGGCGATGG
GGGGATTGAAAGTTCGACAGCTGCCGGTGCAGGTATTGGAAGGGGGGAAG
GAAGAAGAGGGGGGAAGAGAGCGGGACAGAAAGATAGAGGAGCAGGATTG
CAAAGGGGGTGGGGAGGGAGAGAAGGAGGAGGTTTCATCGGTGACGACGG
GAGCAGCAACAGCAGCTGTCGTTGGTAGGAGGAGGAAGGGAGGGAGGAAG
GGGCTCAAAGGGGAGGGAAAAGAAGGGAAGGAGGGAGAGAAGGAGGAAGA
GAGATGGGAGGAGGAAATCCCGTTTGAGCCCAATGAGGCGTGGATTGAGG
AGATGGATCAGATCGTGGTGGTCAGAGGAGAGGCAGCCGCGGCAGCAGCA
GCAGCAGCAGGAGCAGGAGCAAGGAAGGGCAAGGCAACTGGGAAGGGGAA
AAATAAAGGGAGGAAGGGGGGGAGGAAGGGGGGGAGGAAGGGAGGGAAAA
CGGGTGGAGGGAGTGGGGGAGGAACGCAGAAACGATCATCTTCCCCCCTT
GAGATACTGGGGAATATGATGAAGCAGCAGCAGCAGCAGCAGCAGCATGA
GGAGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAGGAGGA
GGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGGAAGGGAAG
ACGTCTTGCTTGCGCCTCATGATGAGGGTGTGGTGCCGGTCGAGGAGGAT
AGGCAAGAGGGAGAGGACGGTAAAGAAGgtagggaggatgagggggagat
gattggggggggcagggggaggaggagggagagacagcggctaaggaaat
tgctttggcttctttgtcagCTGATGCGGTGGGGGTGGCGGTGGTGGTGG
TGGAGGAGGAGGAGGGTAAGGAAGAAGGGGCAAGGGGGGAAGAAGGGAGG
GGTAGGGGAGATGTTAAGGAGGAGACAGTTCTTGAGATAGGGTATTTAAA
GCTGCAGATCGGCACGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAAGA
GGAAGAGGAGATAGAGCGGGAGGTAGTGATGGCTGATGAAGTAGCTGCGG
AGAAGGACGAGGAAGAGAGGGGGGAGGAGGAGCAGGAGGGGGAGGAGGAG
ATGGAGGAGGCAGGGATGGGGGAAGGGTCCAAGGCCATATCCATCATCCA
CTCGAACTCGGCTGTCGGAGCCGAAGCTGTCGAAGCAGAGGAGGAACGGA
GGGAGAGAGTGGAAGGGTCATTTCCCTCGCATAGGACATGCAGTACCACC
ACCACCACAACCCACACGTTCTGTGGAATGATATCTGTGCCTGTGTATTG
GACAGCTGCTAATGGATATATGATGTATCCCTCTCCTGAAACGGGCCTTC
CCCCCCTCCCTGTCCCTCCCCCCGACATCTTCACCCGCCTGCAGCAGCAG
CTGCAGCAGGACCACCATTACCAGGTGCAGTACCAGCCGCTGCAGCAGCA
GCAGAGCCAAGGAGTAAATGATGACGCGGAGACTGTGGGTTGGGAGGAGG
AGGAGGAGGGGGAGGGGGAGGAGGAAGGGAGGGGGGAGGTGTGGGTGGGT
ATTATGATCAGTCAGGGACATATTATCCTGTATATCATACGCCTGTATAT
CAGCATGAGGGTGTCATGA
back to top

protein sequence of NO03G04950.1

>NO03G04950.1-protein ID=NO03G04950.1-protein|Name=NO03G04950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1533bp
MGRRSGNSTVPQQQLPHLQQQQQQSKVVVEVKIQGRQFVPSSLILVQGQT
VGWVNEEYDTKTPHVIHIKPTPGTIANNSNTMVIGRNRRNNTEAEAVAAT
AALEAMAWSSSSALEPGDGFEHTFTHPGIYICKSPSVPTMRCRIEVLPRE
DMENDKMDTREVRHPSYKEKSAQQHWQQHQPQLEKSGKGEVGLMEEGEES
CILSGTMTVPSSNYNPVRTTRQTTRLLTSTTFIHEAPFYCPSSPSHSRAM
ENVPADCVAIDVLPEEPCFAPSAFSPPSRTPTSSAYQPPPSPLPPSSPRR
NVSKGTSTLIPSSSCLHSEGPIRVPSPSSSSSSSSSSSSSSSSSSSSLSA
SASPPSRSSSSGMEKEEQRQAEPQLHALVKEGCTSNSTSATAAGGNHSRE
KWKKKAEHSIRISNFQFVPSSLTVGVGDTVTWKVDDDAMGCQEHVIQGLV
SPPPTPSPPSISSQGAELGVYCLLFESPPLQRGETWMLELTETTTGFTRT
MIEGGGKVLLRCQNYPEDLRGVLEVRPSLPPSSLLKEEGGKEGGGLVDDM
AVGNGEGGQGGRKRKKRKKRRKGGKHEEDEWDGVKLEGKEGETSGTAAAA
FSTVTKQEEENLFMPCSITSVNNNHSSGNGSSSSMGPFDPGETGSITTTD
VGFPPLRTCTSAKPRKPFFSSINNSNKTINNYDITTSPTTTTTGPYSTSA
FTPLPSSSLSLLALTKMAKDGLHPLWAPEGLTLPRVQLTHETLLGTEVVT
VPVGTTVEWVLHLPTKRVLPSCSSSFNSSQQQQKQQQLHRLIVGLNKFHD
GQGKGGAAPVRLASCPRPGDVFSFLPGREGGREGGRERQLELFCHTFKEE
GMHIVACEVVGALMCGIKVVHPLPSSLSSSSFSSVLLPHANKLYTLKDAL
PPSLAMAPAITFYGNQRQKVVLGNAEGYFQASDDDEEEEEDGREEGEEDM
VDLEAAMGGLKVRQLPVQVLEGGKEEEGGRERDRKIEEQDCKGGGEGEKE
EVSSVTTGAATAAVVGRRRKGGRKGLKGEGKEGKEGEKEEERWEEEIPFE
PNEAWIEEMDQIVVVRGEAAAAAAAAAGAGARKGKATGKGKNKGRKGGRK
GGRKGGKTGGGSGGGTQKRSSSPLEILGNMMKQQQQQQQHEEEEEEEEEQ
QQQQQQQQQQQHEEEEEEEEEEEEEQQQQQQQQQQEQQQEEEEQQQQQQQ
QEEEGREDVLLAPHDEGVVPVEEDRQEGEDGKEADAVGVAVVVVEEEEGK
EEGARGEEGRGRGDVKEETVLEIGYLKLQIGTEEEEEEEEEEEEEEEEEE
EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEIEREVVMADEVAAEKDEEER
GEEEQEGEEEMEEAGMGEGSKAISIIHSNSAVGAEAVEAEEERRERVEGS
FPSHRTCSTTTTTTHTFCGMISVPVYWTAANGYMMYPSPETGLPPLPVPP
PDIFTRLQQQLQQDHHYQVQYQPLQQQQSQGVNDDAETVGWEEEEEGEGE
EEGRGEVWVGIMISQGHIILYIIRLYISMRVS*
back to top
Synonyms
Publications