NO03G04930, NO03G04930 (gene) Nannochloropsis oceanica

Overview
NameNO03G04930
Unique NameNO03G04930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1053
Alignment locationchr3:1403653..1404705 +

Link to JBrowse

Properties
Property NameValue
DescriptionRHD3c, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1403653..1404705 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO03G04930 vs. NCBI_GenBank
Match: CBN78159.1 (RHD3c, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic [Ectocarpus siliculosus])

HSP 1 Score: 73.6 bits (179), Expect = 1.400e-9
Identity = 74/287 (25.78%), Postives = 120/287 (41.81%), Query Frame = 0 
Query:   59 LFQPVPLSEFPAFAAELWASIIQESAGGMVGDSPASLPSPSKRGTDEKEIQAFIRRKVVESIVQEAEKRIERLGHKVEAA-ASEMPILEYGRDADSIITSSLKS-LSVRLPXXXXXXXXXXXXXXXXXXXXLTRRLAPSFRQHLDALNEYYFAKFQDRFTGLFLPVRALDKEATSITKDVSTAFQKXXXXXXXXXXXXXXXXXXXXXXXXXXXRLKDEMDLEVADRRMEVEVLFPGEEELEMGRSRFLRKSWWKKVVLKAAVLYVNYLQTVHAAQGMARAAKRRQEK 344
            L  PVPLS+       +W S    S+   + ++P       +RG  +    A     + ES + EA  R  RL   VEAA A EMP+L++G DA  I+  +++S L+                        + R L P+FR H   L  ++  +F++ F+ +       D+ +  ++K +   F +                           +L ++M+  V DR  E   + P +   +   +R  +  WWK +VL+AA +Y NYLQ   A Q + RA K   EK
Sbjct:  300 LHAPVPLSQLRQRLEGIWTS---ASSNNRLAEAP-------RRGEQQ---GAVALSALAESCLSEARPRCARLLTDVEAAVAGEMPLLQFGTDAQEIVDEAVQSFLAKSSRSQIDAPAAVLREKRGSLVSAVARELEPAFRAHARHLRGHFHEQFEEVFSCVLGGAADFDQSSRRMSKTIRQNFLE--ATKLAIPNTPGVADVWRLHWEAELVKLNEDMESRVQDRLSEGTWMLPSDPAEQAAAAR-KKTPWWKGLVLRAAAMYFNYLQ---ATQHLRRAKKGLGEK 567
The following BLAST results are available for this feature:
BLAST of NO03G04930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
CBN78159.11.400e-925.78RHD3c, RHD3/Sey1 family GTPase involved in the ER-... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04930.1NO03G04930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04930.1NO03G04930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04930 ID=NO03G04930|Name=NO03G04930|organism=Nannochloropsis oceanica|type=gene|length=1053bp
ATGCCTTCCAGAGAATTCCAGCCAAGTGCGTTCGAAGAGGCAGTGCAAGA
GCTTCGACGCACTCTCCTGCTCTTTGACCGAGAATCGTCAGCAAACGCAA
CAGGGATCGGAAGAGCTGAATTGTCAACAATCAAGACGAAGAAGCCGTCC
TCCTGGTCAGAAGCACCCACGCAGCTCTTCCAACCGGTACCTCTTTCCGA
ATTCCCCGCCTTCGCCGCTGAGCTCTGGGCCTCCATCATCCAGGAAAGTG
CCGGAGGGATGGTTGGAGACAGCCCTGCCTCCCTCCCGTCCCCCTCAAAG
CGAGGAACGGACGAAAAAGAGATCCAAGCCTTCATTCGTCGGAAGGTGGT
GGAAAGCATTGTCCAGGAGGCGGAGAAACGCATCGAGAGATTGGGGCATA
AGGTAGAGGCAGCTGCCAGTGAGATGCCCATTTTAGAATACGGCCGCGAC
GCCGACAGCATCATTACCTCCTCACTCAAATCGCTCTCGGTCCGCCTTCC
TCCCTCTGCTGCTGCTGCTGCTGCTGCTGCCACGACCGCGGAATCTGATG
TCATTGCCGCACTCACGCGCCGACTTGCTCCCTCCTTCCGCCAACACCTC
GACGCCCTGAACGAGTATTACTTTGCAAAATTCCAAGACCGTTTTACTGG
CCTCTTTCTCCCTGTACGTGCCTTGGACAAGGAGGCGACGTCCATAACAA
AAGACGTGAGCACCGCCTTCCAAAAAGCGGCCGAAGCAGCTGTTCCAGCT
TCCGTAGGGCGGAGGAAGGGAAGGAGGCAGGGGTGGGAGTGGGAATGGGC
GTTAGAACGGTTGAAGGATGAGATGGACTTGGAAGTGGCGGATCGGAGGA
TGGAGGTGGAGGTTCTTTTTCCAGGGGAGGAAGAGTTGGAGATGGGGAGG
AGCCGGTTCCTGAGGAAGTCATGGTGGAAGAAGGTGGTACTCAAGGCGGC
TGTGTTGTACGTAAACTACTTGCAGACAGTCCACGCTGCACAAGGCATGG
CCCGGGCGGCGAAAAGGAGACAGGAAAAATATCCTCCAATTCCCATGTTC
TAG
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protein sequence of NO03G04930.1

>NO03G04930.1-protein ID=NO03G04930.1-protein|Name=NO03G04930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MPSREFQPSAFEEAVQELRRTLLLFDRESSANATGIGRAELSTIKTKKPS
SWSEAPTQLFQPVPLSEFPAFAAELWASIIQESAGGMVGDSPASLPSPSK
RGTDEKEIQAFIRRKVVESIVQEAEKRIERLGHKVEAAASEMPILEYGRD
ADSIITSSLKSLSVRLPPSAAAAAAAATTAESDVIAALTRRLAPSFRQHL
DALNEYYFAKFQDRFTGLFLPVRALDKEATSITKDVSTAFQKAAEAAVPA
SVGRRKGRRQGWEWEWALERLKDEMDLEVADRRMEVEVLFPGEEELEMGR
SRFLRKSWWKKVVLKAAVLYVNYLQTVHAAQGMARAAKRRQEKYPPIPMF
*
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Synonyms
Publications