NO03G04920, NO03G04920 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G04920 vs. NCBI_GenBank
Match: XP_005854576.1 (gtp-binding protein, partial [Nannochloropsis gaditana CCMP526] >EKU21784.1 gtp-binding protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 159.8 bits (403), Expect = 1.800e-35 Identity = 89/147 (60.54%), Postives = 105/147 (71.43%), Query Frame = 0 Query: 161 EEEELYTALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGRRTTRGVWVDLGSEKGS----SCNSASSSSSPTATLSSA--CQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGE 302 +E Y LQY VVAIVGPQASGKSTLLNAL+GTRFPVL V + G GRRTT+GVWVD+G G+ S N + + A + + P+VV+DTEGLESV+RG GS LFDRQLS LAVT ADVI+LN WARD+RGGR G + Sbjct: 2 KENGRYRNLQYTVVAIVGPQASGKSTLLNALYGTRFPVLEVGNVGVGRRTTQGVWVDMGVSDGARGMDSRNRTGAEEEEEGGVGRARVGRGRIPVVVMDTEGLESVSRGPGSHLFDRQLSTLAVTTADVILLNAWARDMRGGRWGSD 148
BLAST of NO03G04920 vs. NCBI_GenBank
Match: XP_005537286.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM81250.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 93.6 bits (231), Expect = 1.600e-15 Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 0 Query: 159 FAEEEELY-TALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGR-RTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313 F E L+ LQY VA++G Q+SGKSTLLN LFGT FP + DA GR + TRG+W+ + + G ++VLD EG +S RGEG+ F+R+ + A+ A V+I+NVWA+DI GR + +LL+T+ E Sbjct: 30 FLHEHRLHERGLQYHTVAVLGCQSSGKSTLLNCLFGTNFPTM---DASIGRYQVTRGIWLGVDARSGE------------------------ILVLDLEGTDSRERGEGAASFERKAALFALALAQVLIINVWAQDI--GRYNA-ANLALLRTVFE 155
BLAST of NO03G04920 vs. NCBI_GenBank
Match: XP_005650010.1 (root hair defective 3 GTP-binding protein [Coccomyxa subellipsoidea C-169] >EIE25466.1 root hair defective 3 GTP-binding protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 92.8 bits (229), Expect = 2.600e-15 Identity = 63/161 (39.13%), Postives = 88/161 (54.66%), Query Frame = 0 Query: 154 QGIQSFAEEEELY-TALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGRR-TTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313 QG+ F E + + Y VVAI GPQ+SGKSTL+NALFGT F + DA +GRR TT+G+W+ KG S+ +VLD EG + RGE + F+RQ S A+ ADV+++N+WA+D+ GR G LL+T+ + Sbjct: 19 QGVNDFVERHNIRDVGVGYQVVAITGPQSSGKSTLMNALFGTTFEEM---DAMSGRRQTTKGIWL----AKGQKIEEPST------------------LVLDLEGSDGRERGEDDNSFERQSSLFALAVADVLLVNMWAKDV--GREAG-AGKPLLKTIFQ 151
BLAST of NO03G04920 vs. NCBI_GenBank
Match: PNH08156.1 (Protein ROOT HAIR DEFECTIVE 3 [Tetrabaena socialis]) HSP 1 Score: 92.4 bits (228), Expect = 3.500e-15 Identity = 60/161 (37.27%), Postives = 91/161 (56.52%), Query Frame = 0 Query: 154 QGIQSFAEEEELYTA-LQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGR-RTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313 Q +Q+F ++ EL + Y VVAI+GPQ+SGKSTLLN +FGT F ++ DA AGR +TT+G+W+ S SP T + ++V+D EG + RGE F+RQ + A+ ADV+++N+W DI + G+ LL+T+ + Sbjct: 17 QSLQTFVDDNELASCKTNYQVVAIMGPQSSGKSTLLNHVFGTSFRMM---DAMAGRGQTTKGIWL---------------SKSPKVT-------ETAVLVMDLEGSDGRERGEDDTNFERQSALFALAVADVLLVNIWCHDIGREQGAGK---PLLRTIFQ 149
BLAST of NO03G04920 vs. NCBI_GenBank
Match: XP_001690372.1 (predicted protein [Chlamydomonas reinhardtii]) HSP 1 Score: 90.1 bits (222), Expect = 1.700e-14 Identity = 61/164 (37.20%), Postives = 90/164 (54.88%), Query Frame = 0 Query: 151 WRTQGIQSFAEEEEL-YTALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGR-RTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313 + + G+QSF ++ EL Y VVAI+GPQ+SGKSTLLN +FGT F ++ DA GR +TT+G+W+ S SP + ++V+D EG + RGE F+RQ + A+ ADV+++N+W DI GR G LL+T+ + Sbjct: 14 FESAGVQSFVDKNELAQCRTNYAVVAIMGPQSSGKSTLLNYVFGTDFKMM---DAMEGRGQTTKGIWM---------------SKSPKV-------ADTTVLVMDLEGSDGRERGEDDTNFERQSALFALAVADVLLVNIWCHDI--GREHGS-GKPLLKTIFQ 149
BLAST of NO03G04920 vs. NCBI_GenBank
Match: XP_002946414.1 (hypothetical protein VOLCADRAFT_79128 [Volvox carteri f. nagariensis] >EFJ52341.1 hypothetical protein VOLCADRAFT_79128 [Volvox carteri f. nagariensis]) HSP 1 Score: 90.1 bits (222), Expect = 1.700e-14 Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 0 Query: 156 IQSFAEEEELYTA-LQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGR-RTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313 +Q F E +L Y VVAI+GPQ+SGKSTLLN +FGT F ++ DA AGR +TT+G+W+ S SP T + ++V+D EG + RGE F+RQ + A++ ADV+++N+W DI GR G LL+T+ + Sbjct: 19 VQQFVEANDLAACKTNYQVVAIMGPQSSGKSTLLNYVFGTNFTMM---DAMAGRGQTTKGIWM---------------SKSPKVT-------ETTVLVMDLEGSDGRERGEDDTNFERQSALFALSVADVLLVNIWCHDI--GREHGS-GKPLLKTIFQ 149
BLAST of NO03G04920 vs. NCBI_GenBank
Match: XP_011399355.1 (Protein ROOT HAIR DEFECTIVE 3, partial [Auxenochlorella protothecoides] >KFM26423.1 Protein ROOT HAIR DEFECTIVE 3, partial [Auxenochlorella protothecoides]) HSP 1 Score: 90.1 bits (222), Expect = 1.700e-14 Identity = 61/148 (41.22%), Postives = 84/148 (56.76%), Query Frame = 0 Query: 167 TALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGR-RTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPL-VVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313 T + Y VVAI+GPQ+SGKSTLLNALFGT F + DA +GR +TTRGVW L+ A + PL +V+D EG + RGE F+RQ + A+ ADV+++N+WA+D+ GR G LL+T+ + Sbjct: 29 TGIDYTVVAIMGPQSSGKSTLLNALFGTSFTEM---DALSGRSQTTRGVW-----------------------LAPAPRISEPLTLVMDLEGSDGRERGEDDTSFERQSALFALAVADVVVVNMWAKDV--GRESG-AGKPLLKTIFQ 147
BLAST of NO03G04920 vs. NCBI_GenBank
Match: PNW77507.1 (hypothetical protein CHLRE_10g439600v5 [Chlamydomonas reinhardtii]) HSP 1 Score: 90.1 bits (222), Expect = 1.700e-14 Identity = 61/164 (37.20%), Postives = 90/164 (54.88%), Query Frame = 0 Query: 151 WRTQGIQSFAEEEEL-YTALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGR-RTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313 + + G+QSF ++ EL Y VVAI+GPQ+SGKSTLLN +FGT F ++ DA GR +TT+G+W+ S SP + ++V+D EG + RGE F+RQ + A+ ADV+++N+W DI GR G LL+T+ + Sbjct: 14 FESAGVQSFVDKNELAQCRTNYAVVAIMGPQSSGKSTLLNYVFGTDFKMM---DAMEGRGQTTKGIWM---------------SKSPKV-------ADTTVLVMDLEGSDGRERGEDDTNFERQSALFALAVADVLLVNIWCHDI--GREHGS-GKPLLKTIFQ 149
BLAST of NO03G04920 vs. NCBI_GenBank
Match: XP_641502.1 (hypothetical protein DDB_G0279823 [Dictyostelium discoideum AX4] >Q54W90.1 RecName: Full=Protein SEY1 homolog >EAL67525.1 hypothetical protein DDB_G0279823 [Dictyostelium discoideum AX4]) HSP 1 Score: 89.7 bits (221), Expect = 2.200e-14 Identity = 59/163 (36.20%), Postives = 91/163 (55.83%), Query Frame = 0 Query: 152 RTQGIQSFAEEEELYT-ALQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGRR-TTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313 RT + + + ++ T Y V++I+GPQ+SGKSTLLN LF TRF V+ DA GR+ TT+GVW+ + AS++++ T ++LD EG + RGE F+R+ S ++ + V+I+N+WA DI GR + SLL+T+ E Sbjct: 121 RTTFLSTLSNRDDFLTKGFDYSVISILGPQSSGKSTLLNLLFNTRFAVM---DASTGRKQTTQGVWMGV----------ASTTNNKNET----------FLILDVEGTDGRERGEDEKAFERKTSLFSLALSSVLIINMWAHDI--GRYNA-ANISLLKTVFE 257
BLAST of NO03G04920 vs. NCBI_GenBank
Match: PSC68109.1 (ROOT HAIR DEFECTIVE 3 [Micractinium conductrix]) HSP 1 Score: 89.7 bits (221), Expect = 2.200e-14 Identity = 62/160 (38.75%), Postives = 89/160 (55.62%), Query Frame = 0 Query: 155 GIQSFAEEEELYTA-LQYGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGR-RTTRGVWVDLGSEKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFDRQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIE 313 G++ F + + +A L Y VVAI+GPQ+SGKSTLLN LFGT F + DA GR +TTRG+W+ + +P T P +VLD EG + RGE F+RQ + A+ ADV+++N+WA+D+ GR G LL+T+ + Sbjct: 25 GVEQFVKSAGVESAGLGYTVVAIMGPQSSGKSTLLNHLFGTSFEEM---DALTGRSQTTRGIWL---------------ARAPKVTAP-------PTLVLDLEGSDGRERGEDDTSFERQSALFALAVADVVLVNMWAKDV--GRESG-AGKPLLKTIFQ 156 The following BLAST results are available for this feature:
BLAST of NO03G04920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G04920 ID=NO03G04920|Name=NO03G04920|organism=Nannochloropsis oceanica|type=gene|length=1242bpback to top protein sequence of NO03G04920.1 >NO03G04920.1-protein ID=NO03G04920.1-protein|Name=NO03G04920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bpback to top Synonyms
Publications
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