NO03G04900, NO03G04900 (gene) Nannochloropsis oceanica

Overview
NameNO03G04900
Unique NameNO03G04900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1532
Alignment locationchr3:1398008..1399539 -

Link to JBrowse

Properties
Property NameValue
DescriptionProtein BROTHER of FT and TFL 1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1398008..1399539 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036610PEBP-like_sf
IPR035810PEBP_euk
IPR008914PtdEtn-bd_prot_PEBP
Homology
BLAST of NO03G04900 vs. NCBI_GenBank
Match: XP_009621088.1 (PREDICTED: protein MOTHER of FT and TFL1 [Nicotiana tomentosiformis] >XP_016458183.1 PREDICTED: protein MOTHER of FT and TFL1-like [Nicotiana tabacum])

HSP 1 Score: 141.4 bits (355), Expect = 3.400e-30
Identity = 71/156 (45.51%), Postives = 94/156 (60.26%), Query Frame = 0
Query:   56 VIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGSYPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEVVGATFFYAAHQ 212
            VI DV+D F P + + V + N  VT G  + P  A   P +T+ G +   LYTLVM+DPDAPSP  P  REW+HWIVTDIP G  ++A G +V  YM P PP G HRY+  +  Q G    +L+PP+ R  F TRAF  +  + V  AT ++ AH+
Sbjct:   13 VIGDVVDMFVPSVTMSVHFGNKHVTNGCDIKPSIAADPPKITV-GGHAADLYTLVMTDPDAPSPSEPNMREWVHWIVTDIP-GCTNVARGKEVLGYMGPRPPVGIHRYIVVLFRQKGPMPGILQPPLARSHFCTRAFAHQLDLGVPVATVYFNAHK 166          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: XP_015065328.1 (PREDICTED: protein MOTHER of FT and TF 1-like [Solanum pennellii])

HSP 1 Score: 141.4 bits (355), Expect = 3.400e-30
Identity = 70/160 (43.75%), Postives = 94/160 (58.75%), Query Frame = 0
Query:   56 VIPDVLDCFSPGIQIRVAY-DNHLVTPGATLLPVQAVHMPTVTLEGS-YPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEVVGATFFYAAHQNN 214
            VI DVLD F P +   V Y    +   G  + P +A   P V ++GS +   LYTLVM+DPDAPSP  PT REWLHWIVTDIP G  D ++G ++  YM P PP G HRYVFT+  Q   E    +PP  R  F+TR F  + G+++  A  ++ + + +
Sbjct:   19 VIGDVLDMFVPVVDFTVEYASKQISNNGVEIKPAEAAQKPRVHIKGSLHSNNLYTLVMADPDAPSPSEPTFREWLHWIVTDIPQGG-DASQGREMVEYMGPKPPAGIHRYVFTLFRQKEAEQVPHKPPQGRSNFKTRQFASDNGLDLPVAALYFNSQKEH 177          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: XP_019229349.1 (PREDICTED: protein MOTHER of FT and TFL1-like [Nicotiana attenuata] >OIT30150.1 protein mother of ft and tfl1 [Nicotiana attenuata])

HSP 1 Score: 141.4 bits (355), Expect = 3.400e-30
Identity = 73/177 (41.24%), Postives = 100/177 (56.50%), Query Frame = 0
Query:   38 MASTLKQSAAPSSLQDAGVIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGSY-PGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEVVGATFFYAAHQNN 214
            MA+ +    +   L    VI DV+D F P ++  V Y +  ++ G  + P  A   P V ++GS     LYTLVM+DPDAPSP  PT REWLHWIVTDI  G  D +EG ++  YM P PP G HRYVFT+  Q   E    +PP +R  F+TR F  E G+ +  A  ++ + + +
Sbjct:    1 MANMVNPPRSVDPLVVGKVIGDVVDMFVPVVEFSVEYGSKQISNGVEIKPAAAAQKPRVHIQGSRGSNNLYTLVMADPDAPSPSEPTFREWLHWIVTDIAEGG-DASEGRELMEYMGPQPPTGIHRYVFTLFRQTEAEQVPHKPPERRANFKTRQFASENGLGLPVAALYFNSQKGH 176          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: XP_012848445.1 (PREDICTED: protein MOTHER of FT and TF 1-like [Erythranthe guttata] >EYU27885.1 hypothetical protein MIMGU_mgv1a022275mg [Erythranthe guttata])

HSP 1 Score: 141.0 bits (354), Expect = 4.400e-30
Identity = 72/166 (43.37%), Postives = 94/166 (56.63%), Query Frame = 0
Query:   46 AAPSSLQDAGVIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGSYPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEVVGATFFYAAHQ 212
            AA   L    VI DVLD F P  ++ V Y    +  G+ + P  A   P V ++G+     YTLVM DPDAPSP  PT REWLHW+V DIP G+ D  EG ++  YM P PP G HRYVF V +Q G    V R P++R  F TR F +E  + +  A  ++ +H+
Sbjct:    4 AALDPLVVGKVIGDVLDMFVPAAELAVHYGGEEIGNGSEVKPSSAAQRPKVQIKGAISPSYYTLVMVDPDAPSPGEPTLREWLHWLVIDIPEGS-DATEGKEIMEYMGPKPPAGVHRYVFAVFQQHGLMETVKRKPVERQLFDTRQFARENDLGLPAAALYFKSHK 168          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: ANS56349.1 (MFT-like protein [Sciadopitys verticillata])

HSP 1 Score: 141.0 bits (354), Expect = 4.400e-30
Identity = 73/157 (46.50%), Postives = 94/157 (59.87%), Query Frame = 0
Query:   56 VIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGS-YPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEVVGATFFYAAHQ 212
            V+ DV+D F P + + V Y    VT G  + P   V+ P V + G  Y   LYTLVM+DPDAPSP  P  REW+HW+VTDIP GA D ++G +V  YM P PP G HRYVF + +Q G    V+ PP QR  F TRAF    G+ +  AT ++ A +
Sbjct:   13 VVGDVIDLFVPSVDMAVYYGAKQVTNGCEIKPSTTVNRPNVQIAGRYYEDSLYTLVMTDPDAPSPSEPNLREWIHWLVTDIP-GATDPSQGREVLPYMGPRPPIGIHRYVFVLFKQAGPMVMVV-PPQQRNNFSTRAFAAHYGLGLPVATVYFNAQK 167          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: XP_008441938.1 (PREDICTED: protein MOTHER of FT and TFL1-like [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 5.700e-30
Identity = 75/163 (46.01%), Postives = 91/163 (55.83%), Query Frame = 0
Query:   50 SLQDAGVIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGSYPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEV-VGATFFYAAHQ 212
            SL    VI DVLD F+P   + V+Y +  V  G  + P  A   PTV ++     +LYTLVM DPDAPSP  PT REWLHWIV DIP GA D  +G +V  YM P PP G HRYVF   +Q       LRPP  R  F TR F  +  + + V A +F +  Q
Sbjct:    7 SLVVGRVIGDVLDMFTPAADVSVSYGSKQVANGCEIKPFVAADRPTVHIQAPISNQLYTLVMVDPDAPSPSEPTFREWLHWIVVDIPEGA-DANKGKEVVQYMGPQPPTGIHRYVFAFFKQNTHLGGRLRPPTTRSNFSTRQFASQHALGLPVAAVYFNSQKQ 168          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: XP_019171877.1 (PREDICTED: protein MOTHER of FT and TFL1-like [Ipomoea nil])

HSP 1 Score: 140.6 bits (353), Expect = 5.700e-30
Identity = 72/159 (45.28%), Postives = 94/159 (59.12%), Query Frame = 0
Query:   56 VIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGSYPG-RLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEV-VGATFFYAAHQN 213
            VI DVLD F P ++  V Y +  +  G  + P  A   P+V + GS     LYTL+M DPDAPSP  PT REWLHW+VTDIP G+ D ++G +VA Y+ P+PP G HRYVF +  Q        +PP  RG FRTR F    G+ + V A +F +  Q+
Sbjct:   17 VIGDVLDMFVPVVEFTVDYGSKKIANGVEITPSSAAQKPSVHINGSPASPNLYTLIMVDPDAPSPSEPTFREWLHWVVTDIPEGS-DASKGREVAEYIGPSPPTGIHRYVFALFRQREAMQVAQKPPESRGNFRTRQFAAANGLGLPVAALYFNSQKQS 174          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: ANS56326.1 (MFT-like protein [Amentotaxus argotaenia])

HSP 1 Score: 140.2 bits (352), Expect = 7.500e-30
Identity = 75/155 (48.39%), Postives = 93/155 (60.00%), Query Frame = 0
Query:   56 VIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGS-YPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEV-VGATFFYA 209
            VI DV+D F P + + V Y    VT G  + P   V+ P V + G  Y   LYTLVM+DPDAPSP  P  REW+HW+VTDIP  A D ++G +V AYM P PP G HRYVF + +Q G    V+ PP QR  F TRAF    G+ + V A +F A
Sbjct:   13 VIGDVIDLFVPSVDMAVHYGTKQVTNGCEIKPSVTVNHPNVQIAGRFYDNSLYTLVMTDPDAPSPSEPNLREWIHWLVTDIP-AATDPSQGREVLAYMGPRPPIGIHRYVFALFKQQGPMVMVM-PPQQRNNFSTRAFAAHYGLGIPVAAVYFNA 165          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: XP_009589130.1 (PREDICTED: protein MOTHER of FT and TFL1-like [Nicotiana tomentosiformis])

HSP 1 Score: 139.8 bits (351), Expect = 9.800e-30
Identity = 76/178 (42.70%), Postives = 98/178 (55.06%), Query Frame = 0
Query:   38 MASTLKQSAAPSSLQDAGVIPDVLDCFSPGIQIRVAY-DNHLVTPGATLLPVQAVHMPTVTLEGSY-PGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEVVGATFFYAAHQNN 214
            MA+ +    +   L    VI DVLD F P I+  V Y     ++ G  + P  A   P V ++GS     LYTLVM+DPDAPSP  PT REWLHWIVTDIP G  D +EG +V  YM   PP G HRYVFT+  Q   E    +PP +R  F TR F  + G+    A  ++ +H+ +
Sbjct:    1 MANMVNPPRSVDPLVVGKVIGDVLDMFVPVIEFTVEYGSKKQISNGVEIKPAAAAQRPRVHIQGSRDSNNLYTLVMADPDAPSPSEPTFREWLHWIVTDIPEGG-DASEGREVMEYMGAQPPTGIHRYVFTLFRQTEAEQVPHKPPERRANFNTRKFASDNGLGFPVAALYFNSHKEH 177          
BLAST of NO03G04900 vs. NCBI_GenBank
Match: ANS56328.1 (MFT-like protein [Cephalotaxus sinensis])

HSP 1 Score: 139.8 bits (351), Expect = 9.800e-30
Identity = 74/155 (47.74%), Postives = 94/155 (60.65%), Query Frame = 0
Query:   56 VIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEGS-YPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAAYMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEV-VGATFFYA 209
            VI DV+D F P + + V Y    VT G  + P   V+ P V + G  Y   LYTLVM+DPDAPSP  P  REW+HW+VTDIP GA D ++G ++ AYM P PP G HRYV+ + +Q G    V+ PP QR  F TRAF    G+ + V A +F A
Sbjct:   13 VIGDVIDLFVPSVDMAVYYGTKQVTNGCEIKPSLTVNRPNVQIAGRFYDNSLYTLVMTDPDAPSPSEPNLREWIHWLVTDIP-GATDPSQGRELLAYMGPRPPIGIHRYVYALFKQQGPMVMVM-PPQQRNNFSTRAFAAHYGLGLPVAAVYFNA 165          
The following BLAST results are available for this feature:
BLAST of NO03G04900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009621088.13.400e-3045.51PREDICTED: protein MOTHER of FT and TFL1 [Nicotian... [more]
XP_015065328.13.400e-3043.75PREDICTED: protein MOTHER of FT and TF 1-like [Sol... [more]
XP_019229349.13.400e-3041.24PREDICTED: protein MOTHER of FT and TFL1-like [Nic... [more]
XP_012848445.14.400e-3043.37PREDICTED: protein MOTHER of FT and TF 1-like [Ery... [more]
ANS56349.14.400e-3046.50MFT-like protein [Sciadopitys verticillata][more]
XP_008441938.15.700e-3046.01PREDICTED: protein MOTHER of FT and TFL1-like [Cuc... [more]
XP_019171877.15.700e-3045.28PREDICTED: protein MOTHER of FT and TFL1-like [Ipo... [more]
ANS56326.17.500e-3048.39MFT-like protein [Amentotaxus argotaenia][more]
XP_009589130.19.800e-3042.70PREDICTED: protein MOTHER of FT and TFL1-like [Nic... [more]
ANS56328.19.800e-3047.74MFT-like protein [Cephalotaxus sinensis][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005393NSK005393Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04900.1NO03G04900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|535984gene_1698Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100035g2gene715Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04900.1NO03G04900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04900 ID=NO03G04900|Name=NO03G04900|organism=Nannochloropsis oceanica|type=gene|length=1532bp
CGGGGGGGTGTTGGCGAATAATCCAGGCTTCATCCAACCTCCTACCATTC
TCCTTTCTTCGATGGGGGACAATAGAAGAGCTGTAGCTCTCTTACGGATG
GTGATGGAATAGTGATCGTATTCTTTGGATAATCACAGATTCATAAGTAT
CCTATGTACGATAGTCTGGCCCAGTATAATAAGCGTCTAAACCCTTAAAG
GACTGATAAACAATGTAGTCCATGAAGCCCTACCACTATACCCCGTCTCT
TGTTCTGTTCTGTGCATCGTTCTTGTGCAGTGTGTGTGTGCTCTCTAAAT
TTTGGCTGACAGAATATTTGGGTGTATCGTAGTTAGGAAAGCTGCCGTGT
TTGTTGTCCCATCCTGCCCTACAATTAAAGCTCGCCTTTCTCATCATCTT
TTCCTCCTCCCCCACTCATCAGCCCCCCCTCTCGTCTCCACCGCCGCCCG
TGCCATCCTTTACATGGCCTCTCTTCGCCAGGGAGCTCCACGCTATTTGA
TATCGCTCGCACTTTTCTTCTCTTCGTCGTTACCCTTCCAGCTTACGCAG
CACTTCGTCCTCGCGCACGCTCAGATGGCCTCTACACTCAAGCAGTCCGC
GGCCCCCAGCTCTTTGCAAGACGCGGGGGTCATTCCGGACGTCTTGGACT
GCTTCTCCCCAGGTATACAGATCCGCGTTGCGTATGATAATCATTTAGTC
ACTCCAGGTGCGACCCTTCTTCCTGTTCAAGCCGTGCACATGCCCACGGT
AACGCTCGAAGGCTCCTACCCAGGTCGGCTCTACACTCTTGTCATGTCCG
ATCCTGATGCTCCCTCCCCCGAGCACCCTACCCACCGTGAATGGCTGCAT
TGGATCGTCACAGACATCCCAGGAGGTGCAAAAGACATAGCGGAAGGCAC
GCAAGTCGCGGCTTACATGCCTCCGACCCCTCCGAAGGGAACACATCGAT
ATGTGTTTACTGTTATGGAACAACCGGGGCGCGAATCACGGGTTTTGCGT
CCACCCATGCAACGGGGAGGGTTTCGGACCCGTGCCTTCTTGAAGGAGGG
GGGAATGGAGGTGGTAGGAGCGACGTTCTTCTATGCAGCGCATCAGAATA
ATTAAGACGGGGGAAGTAGAAGGGAGCGAAGGAGGGAGGTGGAAATAAAT
TAATGGACTAAGGTGACGGAGGGAGGGCCAGGGGTTAAGTTAAAGAAGCA
AATACAACGGTGCCCAAGACTGTTGTACCCTGAGGGGCCGTTAAGCGGCT
ATCACTTGTACATACAGCGACGGAGAGAGAGTGGGGAATTTACGGTCTAG
CAGGAATTGTTCAAGGTTTAAATATCCGTTTAGCATGGCCGTTATATTCA
TTGGCACAAAAGACAAACACGCTTGAGATTGAGAAGATGGTTCGCACGAT
AGAAGTCGGGGTTGGAGGTCGATGGAATTCCCTATGCGATGGCCGTCATC
AATAATAGGCCATGACAGCCAGGGAAGATTCGCAGCTTGGCAATGACCGA
CATTGAGTCAAACAAACCGAGGCAAAACAACC
back to top

protein sequence of NO03G04900.1

>NO03G04900.1-protein ID=NO03G04900.1-protein|Name=NO03G04900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MASLRQGAPRYLISLALFFSSSLPFQLTQHFVLAHAQMASTLKQSAAPSS
LQDAGVIPDVLDCFSPGIQIRVAYDNHLVTPGATLLPVQAVHMPTVTLEG
SYPGRLYTLVMSDPDAPSPEHPTHREWLHWIVTDIPGGAKDIAEGTQVAA
YMPPTPPKGTHRYVFTVMEQPGRESRVLRPPMQRGGFRTRAFLKEGGMEV
VGATFFYAAHQNN*
back to top
Synonyms
Publications