NO03G04860, NO03G04860 (gene) Nannochloropsis oceanica

Overview
NameNO03G04860
Unique NameNO03G04860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2133
Alignment locationchr3:1384825..1386957 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1384825..1386957 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G04860 vs. NCBI_GenBank
Match: EWM29915.1 (hypothetical protein Naga_100035g5 [Nannochloropsis gaditana])

HSP 1 Score: 496.5 bits (1277), Expect = 1.400e-136
Identity = 311/691 (45.01%), Postives = 383/691 (55.43%), Query Frame = 0 
Query:    1 MRLALSTLTASALVWVTLAQPEASHGRSPHAHPEQKSVATSTEAFKPIDEGGRRLDAFDDRMAGYEQKGKYWEQWAIDHGYAPGPNSKYGKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSTTPAADADKLSVGNPPVVDFGNFLNIDFYRKKAEELEAWAQQEGILPTYQGRASMMEQRQRARAESDGVVDMPRYLTSSDNDEEPKVDVPRLEPAEASAFDEGVNYYKALSEWQQNYWKEYAKEWVAWSQQQGLSPSFPSPR------------DAPRKLQGEVEAPPNDAFDERMEEYKASAEYFAALKEWQKDYWTAYGKGWAKWTVDQGYAPSPESKTYHPKHVAAGVQEIAKDTVDSAATTTAETVNHYNAVASQETDYWQEQAHYRRQKGAARGQAWVEWAQRQGYMPTPENPPE----EQPVVAAEDGGK-EGKTSRRLDAFDDRMARYEAIGKFEEQYWKKRGKSWEQWAIEQGYAPGPDSKFGK-ADAAIDPAQAEAELHAERAQWDEQQRQEEPVVASAAADKAEAIRGDSYQTEGRSWAEWLRTQTFGEDEEVLNMQSTPGFKGQEGPVQSIREKLRMDVGVGGEIYAAVPEESVSDKAREDVYKHQSWMGRSATRVVNGIENGAGHVYSAGERLVSRAEDAAKSAV 674
            MR++ + LTA AL W T AQ     GRS     EQ    TS + FKPID+GGRRLDAFDDRMAGYE KGKYWEQWAIDHGYAPGP+SKYGK                                                                  AA+  +   G     +F   +++ FY KKA +LEAWA+QEG LP++  +    +Q      E D V D+PR+L     D  P        PA+ +      +YYKAL EWQ+ YW+ YAK+WV   ++QG  PS  S R            D PR+L    E    DAFDERMEEYKASA Y AAL EW+K+YWTAYG GWA W  D+G+APSP S  Y      A VQE  K   D         +N ++A+  QE+ YW+EQ+  R++KG ARGQAW++WA ++GYMP PE P E       V     GGK E + SRRLDAFDDRMARYEAIG+FE +YWKKRGKSWEQWAI+QGYAPGPDSK+ K A+  +                     + +P+      DKAEAIRGD Y+ +GR+WAEWLR +TFGE         T G++G+ G   S   K+  DVG  G    A+      D+A EDVYKHQ+WMGRS  RVVNG+E GA H Y+AGER+VSRAE+  + AV
Sbjct:   26 MRISFTALTAIALAWATDAQQAGVQGRSSR---EQ----TSRDGFKPIDDGGRRLDAFDDRMAGYEAKGKYWEQWAIDHGYAPGPDSKYGKKHETQQALNDRLPETLSSEERW-----------------------------------------VPMAANGAQEVFGGASAKEFDTVVDMAFYEKKARDLEAWARQEGRLPSFTHK-QQQKQEIETPEEEDRVRDVPRHLA----DATP--------PAQEAL----TSYYKALGEWQKAYWEAYAKQWVNIGERQGFVPSEKSNRRAATDGDDDDSVDVPRRLG---EEGSGDAFDERMEEYKASAAYLAALGEWEKNYWTAYGDGWAHWAQDRGFAPSPNSNRY------AQVQEDDKSLKDQG------FLNRFDAMVEQESAYWREQSESRKEKGEARGQAWLDWAVQRGYMPPPEGPGEPRGGSDAVAPKTKGGKGEYQGSRRLDAFDDRMARYEAIGQFEAEYWKKRGKSWEQWAIDQGYAPGPDSKYRKPAEEDLAWXXXXXXXXXXXXXXXXXNEEGQPMPVGGLDDKAEAIRGDFYKADGRNWAEWLRARTFGEG-SAEEYAPTQGYEGKAGAAHSSAYKIGTDVGADG----AILLNQDIDRAVEDVYKHQTWMGRSTARVVNGMEKGAEHAYAAGERIVSRAENRVEDAV 631
The following BLAST results are available for this feature:
BLAST of NO03G04860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29915.11.400e-13645.01hypothetical protein Naga_100035g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005397NSK005397Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04860.1NO03G04860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667577gene_1695Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100035g5gene718Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04860.1NO03G04860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04860 ID=NO03G04860|Name=NO03G04860|organism=Nannochloropsis oceanica|type=gene|length=2133bp
ATGCGGCTGGCTTTGTCCACCCTCACCGCCAGTGCCTTGGTATGGGTCAC
GCTGGCACAGCCAGAAGCCTCCCATGGTCGGAGCCCGCACGCCCACCCAG
AGCAGAAGTCTGTCGCCACGTCCACCGAGGCATTCAAGCCTATCGACGAG
GGTGGTCGACGCCTGGATGCATTTGACGACCGTATGGCCGGCTATGAGCA
GAAAGGGAAGTACTGGGAGCAATGGGCCATCGACCACGGCTATGCCCCAG
GCCCCAACTCCAAATACGGCAAGCCACCCCAGCAGCAGCAGCAGCAGCAG
CAACAACAACAACAACAACAACAACAACAGCAACAACAACAGCAACAACA
ACAACAACAACAACAACAACAACAACAACAGCAACAACAACAACAACATC
AACAACAACAACAACAGCAGCAGCAGCAGGCCCAGCCCCGTCAACAGGAG
CAGTGGGTCTCTACGACGCCCGCCGCCGACGCCGACAAGTTGTCTGTTGG
CAATCCTCCGGTTGTAGACTTTGGGAATTTCCTTAACATTGACTTTTACC
GGAAAAAGGCCGAGGAACTCGAGGCCTGGGCGCAGCAAGAAGGCATATTG
CCCACCTACCAGGGCAGAGCCTCGATGATGGAGCAGCGGCAACGTGCGCG
TGCCGAAAGCGACGGTGTAGTAGACATGCCACGCTACTTGACTTCATCCG
ACAACGACGAGGAGCCCAAAGTTGATGTGCCGCGCCTCGAGCCTGCCGAA
GCGTCTGCTTTTGACGAAGGCGTGAATTACTACAAGGCCCTGAGTGAGTG
GCAGCAGAACTACTGGAAAGAGTACGCCAAAGAGTGGGTGGCCTGGAGCC
AGCAGCAGGGTCTCTCTCCTTCCTTTCCCTCCCCGAGGGACGCCCCTCGT
AAATTGCAGGGGGAAGTAGAGGCGCCACCGAATGACGCGTTCGATGAGCG
GATGGAGGAGTATAAAGCTTCGGCTGAGTATTTCGCTGCCCTGAAGGAGT
GGCAGAAGGATTACTGGACGGCCTATGGGAAGGGATGGGCGAAGTGGACG
GTTGATCAGGGCTATGCTCCCTCTCCCGAGTCAAAGACTTACCACCCGAA
GCACGTCGCGGCGGGGGTCCAGGAGATTGCGAAGGATACAGTGGACTCGG
CGGCGACGACGACGGCTGAGACCGTGAATCACTACAATGCTGTGGCTAGC
CAGGAGACGGATTATTGGCAAGAGCAGGCGCACTACCGCAGGCAAAAGGG
TGCGGCCCGTGGACAGGCCTGGGTTGAGTGGGCTCAGCGTCAGGGCTACA
TGCCCACACCCGAGAACCCTCCTGAAGAGCAGCCGGTGGTGGCGGCGGAG
GATGGAGGGAAGGAGGGCAAGACCAGCCGTCGGCTGGACGCGTTTGATGA
TCGCATGGCCAGGTATGAAGCGATTGGAAAATTCGAGGAGCAGTACTGGA
AGAAACGGGGGAAGAGCTGGGAGCAGTGGGCGATCGAACAGGGCTATGCT
CCTGGGCCAGACTCCAAGTTCGGCAAAGCTGACGCTGCAATCGACCCAGC
TCAGGCGGAGGCAGAATTGCACGCGGAGCGAGCGCAGTGGGATGAGCAGC
AGAGACAGGAAGAACCGGTCGTGGCGTCGGCGGCGGCAGATAAAGCTGAG
GCGATTCGTGGGGATTCGTATCAAACTGAGGGACGGAGCTGGGCCGAGTG
GCTCCGTACGCAGACTTTTGGGGAGGACGAGGAGGTGTTGAACATGCAGA
GCACGCCAGGCTTCAAGGGCCAGGAGGGACCTGTGCAATCGATCAGGGAG
AAGCTACGTATGGACGTGGGGGTGGGAGGCGAGATTTACGCGGCTGTGCC
TGAGGAGAGCGTCAGCGATAAGGCGCGGGAGGATGTGTATAAGCACCAAT
CTTGGATGGGGCGAAGCGCGACGCGTGTGGTGAATGGAATAGAAAATGGG
GCGGGGCATGTGTATTCGGCCGGGGAGCGCCTTGTCTCTCGGGCTGAGGA
TGCTGCCAAGTCGGCTGTGGGCGTTGCTACTCCCGCTGCTCCTGTTGCGA
TTTCCGAAGAGGCTGCAGCCGAGACGATCCCTGCGCCCCAGCCCAAGCAG
CAGCAGAAGCGCATGCGCGGACAGGCCAAGTAG
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protein sequence of NO03G04860.1

>NO03G04860.1-protein ID=NO03G04860.1-protein|Name=NO03G04860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=711bp
MRLALSTLTASALVWVTLAQPEASHGRSPHAHPEQKSVATSTEAFKPIDE
GGRRLDAFDDRMAGYEQKGKYWEQWAIDHGYAPGPNSKYGKPPQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQQAQPRQQE
QWVSTTPAADADKLSVGNPPVVDFGNFLNIDFYRKKAEELEAWAQQEGIL
PTYQGRASMMEQRQRARAESDGVVDMPRYLTSSDNDEEPKVDVPRLEPAE
ASAFDEGVNYYKALSEWQQNYWKEYAKEWVAWSQQQGLSPSFPSPRDAPR
KLQGEVEAPPNDAFDERMEEYKASAEYFAALKEWQKDYWTAYGKGWAKWT
VDQGYAPSPESKTYHPKHVAAGVQEIAKDTVDSAATTTAETVNHYNAVAS
QETDYWQEQAHYRRQKGAARGQAWVEWAQRQGYMPTPENPPEEQPVVAAE
DGGKEGKTSRRLDAFDDRMARYEAIGKFEEQYWKKRGKSWEQWAIEQGYA
PGPDSKFGKADAAIDPAQAEAELHAERAQWDEQQRQEEPVVASAAADKAE
AIRGDSYQTEGRSWAEWLRTQTFGEDEEVLNMQSTPGFKGQEGPVQSIRE
KLRMDVGVGGEIYAAVPEESVSDKAREDVYKHQSWMGRSATRVVNGIENG
AGHVYSAGERLVSRAEDAAKSAVGVATPAAPVAISEEAAAETIPAPQPKQ
QQKRMRGQAK*
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Synonyms
Publications