NO03G04840, NO03G04840 (gene) Nannochloropsis oceanica

Overview
NameNO03G04840
Unique NameNO03G04840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1534
Alignment locationchr3:1380544..1382077 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1380544..1382077 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G04840 vs. NCBI_GenBank
Match: EWM29891.1 (hypothetical protein Naga_100035g8 [Nannochloropsis gaditana])

HSP 1 Score: 369.0 bits (946), Expect = 1.500e-98
Identity = 219/333 (65.77%), Postives = 255/333 (76.58%), Query Frame = 0 
Query:    1 MGKTSTAAAKRSTTSRAMTVSSS-RSDKELTIMPS--TELQDLDSLANQMEEQLMQEFEALLTARRKQEIDGADSKIGALKTSAGASGSSFGNKDQDARDALYWKHMYERLRDLRETDAERLLRETVQHSEEREKSLLDVIAHLEAGGETGNGGKA---GAKVDVRLSDVSMCGVVRGGGGSEYTSGAATDTDGQEIDVVEMNKEVMAEKEARIASLEGKIADLKRVLMAYQRFTSLCMTMERKASGPGGVSKLSCTAINHVHKKAVKFSLKMNVDVEDNLGMDATFRPVANKELLPQFLQQEATLETKQCPLLLLSILKTLFDEKKNGAGKE 328
            MGKT+T   KRS TS+    SSS RS KEL I  S   ELQDL +LA QMEEQLMQEFE LL+ARRK+E  GA         +AG +G+  G+KDQDARDALYWKHMYERLRDLRETDAERLLRE+VQH++ERE+SLLD+I+HLE GG T    ++     K+DVRLSDVS+C           T   A +  GQ  +   +  +   E +A+IA+L+GK++DLKR+L+AYQRFTSLC++MER+AS PGG+SKLSCTAINHVHKKAVKFSLKMNVDVED+  MDATFRP ANKEL P FLQQEATLETKQCPLLLLSILKTLFDEKKNGAGKE
Sbjct:    1 MGKTTT---KRSMTSKVGKPSSSTRSSKELMIPSSETVELQDLSTLAKQMEEQLMQEFEVLLSARRKKENSGAVGN----SLNAGITGNR-GDKDQDARDALYWKHMYERLRDLRETDAERLLRESVQHADERERSLLDLISHLEEGGATDGARRSRSKSGKMDVRLSDVSLCEF-----SGRDTRSTAMEVGGQS-EAKAVGHQDTRELQAQIATLQGKLSDLKRILIAYQRFTSLCISMEREASAPGGMSKLSCTAINHVHKKAVKFSLKMNVDVEDSSNMDATFRPEANKELFPPFLQQEATLETKQCPLLLLSILKTLFDEKKNGAGKE 319
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BLAST of NO03G04840 vs. NCBI_GenBank
Match: CBJ32342.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 79.3 bits (194), Expect = 2.400e-11
Identity = 65/230 (28.26%), Postives = 100/230 (43.48%), Query Frame = 0 
Query:   97 DALYWKHMYERLRDLRETDAERLLRETVQHSEEREKSLLDVIAHLEAGGETGNGGKAGAKVDVRLSDVSMCGVVRGGGGSEYTSGAATDTDGQEIDVVEMNKEVMAEKEARIASLEGKIADLKRVLMAYQRFTSLCMTMERKASGPG---------GVSKLSCTAINHVHKKAVKFSLKMNVDVEDNLGMDATFRPVANKELLPQFLQQEATLETKQCPLLLLSILKTLF 318
            +A YWK MY+ L  LR T  E  L    +H+ ER+++    I  L       NGG A  K                             + G E        E  +  E+ +  LE K    ++++  YQ  +SL +  + K  G G          +  ++CTA+NHVH++AV+F LK  +  E+++G D  +R   N  LLP+++Q        QCPL L  +L+ LF
Sbjct:  425 EAEYWKGMYDELASLRHTMPEEQLALFKEHAAERDRTSASYIEQL----RKKNGG-AAEKPSPXXXXXXXXXXXXXXXXXXXXXXXXXXSAGVE------EGEYCSFSESYVRGLEEKQVYHRKIIRLYQNLSSLAIHPKEKKKGSGDAGGDAGKRDLDVITCTAVNHVHRRAVRFDLK--IPHEEDVG-DFAYRATGNTHLLPEYMQHPLLFTKNQCPLFLTKLLQNLF 640
The following BLAST results are available for this feature:
BLAST of NO03G04840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29891.11.500e-9865.77hypothetical protein Naga_100035g8 [Nannochloropsi... [more]
CBJ32342.12.400e-1128.26expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005399NSK005399Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04840.1NO03G04840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573110gene_1693Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100035g8gene720Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04840.1NO03G04840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04840 ID=NO03G04840|Name=NO03G04840|organism=Nannochloropsis oceanica|type=gene|length=1534bp
ACAGGGCCACAATACAAGCAACACACCGCGACGATGGGAAAGACGTCAAC
CGCCGCAGCTAAGCGATCGACCACTTCCAGGGCCATGACTGTAAGCAGCA
GCAGGAGTGACAAGGAGCTGACAATAATGCCCTCGACCGAGCTTCAGGAC
CTTGATTCGCTCGCCAATCAAATGGAGGAGCAGCTCATGCAGGAATTTGA
GGCCTTATTGACAGCGAGACGTAAACAAGAGATTGATGGAGCGGACAGCA
AGATTGGAGCATTGAAAACGTCTGCTGGCGCTAGCGGTAGCAGTTTCGGG
AACAAGGACCAAGATGCCCGCGATGCCTTGTACTGGAAGCATATGTACGA
ACGCCTGCGCGACTTGCGGGAAACGGACGCTGAGCGTTTGTTGCGGGAGA
CGGTGCAGCATTCGGAAGAACGGGAAAAGTCGTTATTAGACGTGATTGCG
CATCTGGAGGCAGGCGGCGAGACGGGTAATGGTGGCAAGGCCGGGGCCAA
GGTGGACGTACGGTTGAGCGACGTGTCTATGTGTGGGGTGGTGAGAGGAG
GTGGGGGTAGTGAATACACATCAGGGGCGGCGACGGATACGGATGGACAG
GAAATCGATGTAGTGGAGATGAACAAGGAGGTCATGGCGGAGAAGGAGGC
ACGAATTGCCTCATTGGAGGGGAAAATAGCGGATTTGAAGCGGGTCTTGA
TGGCTTACCAACGCTTTACTTCCTTGTGTATGACAATGGAACGTAAGGCG
TCTGGCCCCGGAGGAGTAAGCAAATTGAGCTGTACGGCTATAAATCACGT
GCATAAAAAGGCGGTGAAGTTTTCGTTGAAAATGAACGTGGACGTGGAGG
ATAATTTGGGGATGGACGCGACATTCCGACCGGTGGCGAACAAGGAGTTG
TTGCCGCAGTTTTTGCAGCAGGAGGCGACTCTGGAGACGAAGCAATGCCC
GTTGCTCTTGTTGTCGATCTTGAAGACATTGTTTGACGAAAAGAAGAATG
GGGCGGGAAAAGAATAGAAGAATGCGGGTAATGCGCAAGACAGGATAGAG
AGTGTGTATGAGTGAGCGGGTGGATTCCAAAAAGCTGGTTGGGTGGATAC
GGGAAAAGGGAGATGATATGTGTATTAAAGAGAAATTTAAAAAGTCGAAA
CTTTGTCCTCTTCCTTTAAATATTGAGCAGGAGAAGGAGGACACATGACA
GGTTTATATTGGGATTCCACGAGGTGGCTTGTTGAGAGAGCGTGCAGCAT
CTAGCTATGGCTGCCTAGTGAATGAAATGCACGATTCAAAAGCGCGCCTG
GAGCCTGGAGAAAATAAAGGACCAGCCCTTGAAATGGGTTGCGAGTCAAT
CGAAGACAGGTAGACGATGAGGATGACGGTACGATTATATTTAATGTGAC
TGTTTGTACGTATGGCTAAGGAGAAGGAACGGCGAGAAGAAAACAACCAA
AAAAAGAAAAAGAAAAAAAGGGTTGGAGGGGAAAGAGTTGACAGTAGAAC
GAAAAGAGGGAAAACAGAGAAATCTGTCCAGCCC
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protein sequence of NO03G04840.1

>NO03G04840.1-protein ID=NO03G04840.1-protein|Name=NO03G04840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MGKTSTAAAKRSTTSRAMTVSSSRSDKELTIMPSTELQDLDSLANQMEEQ
LMQEFEALLTARRKQEIDGADSKIGALKTSAGASGSSFGNKDQDARDALY
WKHMYERLRDLRETDAERLLRETVQHSEEREKSLLDVIAHLEAGGETGNG
GKAGAKVDVRLSDVSMCGVVRGGGGSEYTSGAATDTDGQEIDVVEMNKEV
MAEKEARIASLEGKIADLKRVLMAYQRFTSLCMTMERKASGPGGVSKLSC
TAINHVHKKAVKFSLKMNVDVEDNLGMDATFRPVANKELLPQFLQQEATL
ETKQCPLLLLSILKTLFDEKKNGAGKE*
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Synonyms
Publications