NO03G04780, NO03G04780 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_018616215.1 (pseudouridine synthase [Segetibacter koreensis]) HSP 1 Score: 203.4 bits (516), Expect = 9.000e-49 Identity = 99/203 (48.77%), Postives = 143/203 (70.44%), Query Frame = 0 Query: 64 VYDYLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 ++ Y +++KP++VL QFS+ + K TL + P+DVYPVGRLDYDSEG ++LTND ++NHR+L+P ++HEREY VQVEG +T++ + LR+ G+ +++ GK H++ PC + PP + R PPIR RK IP SW+ L + EG+NRQVRRM A VGFP LRL+R+R++KL +A + PGE++ L +EE YE L Sbjct: 3 MHRYFIIYKPYHVLTQFSSEDRKTTLKEHF--NVPKDVYPVGRLDYDSEGLLILTNDASLNHRLLNPQYKHEREYWVQVEGSITKQAIDDLRK-GVVISID-GKQHKTLPCK-------AYSFTEPPTVFERHPPIRFRKNIPVSWISLTLIEGKNRQVRRMTAKVGFPTLRLIRYRIQKLTLADMRPGEMKELTKEEIYEAL 194
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_083721946.1 (pseudouridine synthase [[Flexibacter] sp. ATCC 35208] >OMP79816.1 pseudouridine synthase [[Flexibacter] sp. ATCC 35208]) HSP 1 Score: 202.2 bits (513), Expect = 2.000e-48 Identity = 100/202 (49.50%), Postives = 138/202 (68.32%), Query Frame = 0 Query: 65 YDYLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 ++Y +++KPF VL +F EGK +L D P DVYPVGRLDYDSEG ++LTND A+NHR+LDP HEREY VQV+G VT+ + +LR+ G+ +N+ GK +++RPC + + E E P R PPIR RK IP W++L + EG+NRQVR+M A VGFP LRL+R+R+ K +AGL PG++R ++E Y+ L Sbjct: 3 FNYYIIYKPFQVLTRFGKEEGKASLGDFF--KVPPDVYPVGRLDYDSEGLLVLTNDKALNHRLLDPKFAHEREYWVQVDGAVTDTAVQQLRQ-GVPINID-GKMYKTRPC---KATLFPEDPEVP----DRNPPIRFRKSIPAPWIKLSLKEGKNRQVRKMTAAVGFPTLRLIRYRIGKATIAGLLPGDIREYSQQELYDLL 193
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_072358863.1 (pseudouridine synthase [Chitinophaga sancti] >SFW41390.1 23S rRNA pseudouridine2457 synthase [Chitinophaga sancti]) HSP 1 Score: 201.4 bits (511), Expect = 3.400e-48 Identity = 100/202 (49.50%), Postives = 138/202 (68.32%), Query Frame = 0 Query: 65 YDYLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 ++Y +++KPF VL +F EGK +L D P DVYPVGRLDYDSEG ++LTND A+NHR+LDP HEREY VQV+G VT+ + +L + G+ +N+ GK +++RPC R L E + P + R PPIR RK IP W++L + EG+NRQVR+M A VGFP LRL+R+R+ K VAGL PG+++ ++E Y+ L Sbjct: 3 FNYYIIYKPFQVLTRFGKEEGKASLGDFF--KVPSDVYPVGRLDYDSEGLLVLTNDKALNHRLLDPKFAHEREYWVQVDGAVTDTAILQLSQ-GVSINID-GKMYKTRPC----RASLFEED---PAVPERNPPIRFRKSIPAPWIKLSLKEGKNRQVRKMTAAVGFPTLRLIRYRIGKATVAGLQPGDMKEYSKQELYDLL 193
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_054279984.1 (pseudouridine synthase [Chitinophagaceae bacterium PMP191F]) HSP 1 Score: 201.1 bits (510), Expect = 4.500e-48 Identity = 100/200 (50.00%), Postives = 136/200 (68.00%), Query Frame = 0 Query: 67 YLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 Y ++FKP+ VL QFS EGK+TL ++ P DVYPVGRLDYDSEG ++LTND +NHR+L+P HEREY VQV+G + E L+ LR G+ ++L G + +R C E+ I PP + R PP+R RK IPTSW++L +TEG+NRQVR+M A VGFP LRL+R R+ ++ GL PG++R L R++ Y +L Sbjct: 4 YFIIFKPYQVLSQFSPEEGKQTLKNIF--NVPNDVYPVGRLDYDSEGLLILTNDKQLNHRLLNPQWTHEREYWVQVDGAIDEAALNSLR-AGVTISLANG-PYNTRACK-AEKFI------QPPAVPERNPPVRFRKNIPTSWIKLMLTEGKNRQVRKMTAKVGFPTLRLIRHRIVQITTDGLQPGDMRELNRQQLYSRL 192
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_083550032.1 (pseudouridine synthase [Chitinophaga jiangningensis] >SHL90148.1 ribosomal large subunit pseudouridine synthase E [Chitinophaga jiangningensis]) HSP 1 Score: 201.1 bits (510), Expect = 4.500e-48 Identity = 105/202 (51.98%), Postives = 137/202 (67.82%), Query Frame = 0 Query: 67 YLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKLQL 269 Y +++KP+ VL +F+ K LAD P DVYPVGRLDYDSEG +LLTND A+NHR+L P ++HEREY VQV+G VTEE + KL + G+ +N+ GK + +R C +E E P + PR PPIR RK IP WLR+ + EG+NRQVR+M A VGFP LRLVR+R+E L +AG+ G++ L REE Y KL+L Sbjct: 23 YYVIYKPYEVLTRFTPEGNKACLADFF--KVPSDVYPVGRLDYDSEGLLLLTNDKALNHRLLSPKYQHEREYWVQVDGAVTEEAVRKLVQ-GVQINVD-GKMYLTRKCK-------AEIFEEEPVLPPRNPPIRFRKSIPAPWLRMTLHEGKNRQVRKMTAAVGFPTLRLVRYRMEGLTIAGMNAGDMVELSREEVYRKLKL 213
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_095836925.1 (pseudouridine synthase [Chitinophaga sp. MD30] >ASZ10298.1 pseudouridine synthase [Chitinophaga sp. MD30]) HSP 1 Score: 200.3 bits (508), Expect = 7.700e-48 Identity = 101/200 (50.50%), Postives = 138/200 (69.00%), Query Frame = 0 Query: 67 YLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 Y L++KP+ VL QFS K+TLAD PRDVYPVGRLDYDSEG +LLTND +NHR+L+P+ HEREY VQV+G VT +++L E G+D+N+ GK +R+RPC + + P + R PPIR RK IP W+++ + EG+NRQVR+M A VGFP LRL+R+R+E L +AG+ PG++R+L+ E +L Sbjct: 5 YYLIYKPYQVLTQFSPEGNKQTLADYF--DVPRDVYPVGRLDYDSEGLLLLTNDKTLNHRLLNPLFAHEREYWVQVDGAVTPAAVNQL-EKGVDINVD-GKLYRTRPCK-------ASIFDTEPEVPVRNPPIRFRKNIPAPWIQMVLQEGKNRQVRKMTAAVGFPTLRLIRYRMEGLHIAGMQPGDMRLLQHEAVMREL 193
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_014222763.1 (pseudouridine synthase [Niastella koreensis] >AEW02853.1 ribosomal large subunit pseudouridine synthase E [Niastella koreensis GR20-10] >OQP55182.1 pseudouridine synthase [Niastella koreensis]) HSP 1 Score: 199.9 bits (507), Expect = 1.000e-47 Identity = 99/204 (48.53%), Postives = 139/204 (68.14%), Query Frame = 0 Query: 64 VYDYLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREG-GLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 ++ Y +++KPF VL QFS+ EGK TL P DVYPVGRLDYDSEG ++LTNDT++NHR+L+P HEREY VQV+GE+ ++ + +L+ G + +N G +R+RPC + PP + R PPIR RK IPTSW++L +TEG+NRQVR+M A GFP LRL+R+R+E++ + GL PGE+R + + + Y L Sbjct: 1 MHRYFIIYKPFQVLSQFSSEEGKHTLKTFF--NVPADVYPVGRLDYDSEGILILTNDTSLNHRLLNPSFAHEREYWVQVDGEIHDKAIQQLQTGVTITIN---GSKYRTRPCK------ATRFANTPP-VPERNPPIRYRKDIPTSWVKLVLTEGKNRQVRKMTAQTGFPTLRLIRYRIERITLDGLLPGEMREMNKNDIYTHL 192
BLAST of NO03G04780 vs. NCBI_GenBank
Match: OJY87747.1 (pseudouridine synthase [Sphingobacteriales bacterium 40-81]) HSP 1 Score: 199.5 bits (506), Expect = 1.300e-47 Identity = 96/202 (47.52%), Postives = 143/202 (70.79%), Query Frame = 0 Query: 65 YDYLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 + Y +++KP+ VL QF++ +GK+ L D+ P RDVYPVGRLDYDSEG ++LTND A+NH++L+P+ +H+R+Y+VQV+G++T E L KL +GG+D+N+ GKT+R++ C E +++ P I R PP+R RK IPTSW+ L +TEG+NRQVR+M A VGFP LRL+R + + + L PG+++ L Y +L Sbjct: 3 HSYYIIYKPYMVLSQFTSVDGKQCLKDLFSP--GRDVYPVGRLDYDSEGLLILTNDAALNHKLLNPLFKHQRKYMVQVDGQITTEALVKL-QGGIDINI-NGKTYRTQSC---EATLIN----GAPLIPDRNPPVRYRKNIPTSWIELTLTEGKNRQVRKMTAAVGFPTLRLIRSAIGNITIGDLQPGDIKALSGNTIYRQL 193
BLAST of NO03G04780 vs. NCBI_GenBank
Match: PVD49821.1 (pseudouridine synthase [Terrimonas sp. NS-102]) HSP 1 Score: 199.5 bits (506), Expect = 1.300e-47 Identity = 96/202 (47.52%), Postives = 143/202 (70.79%), Query Frame = 0 Query: 65 YDYLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKL 267 + Y +++KP+ VL QF++ +GKR L D+ P RD+YPVGRLDYDSEG ++LTND A+NH++L+P+ +H+R+Y+VQV+G++T E L KL +GG+D+N+ GKT+R++ C E +++ P I R PP+R RK IPTSW+ L +TEG+NRQVR+M A VGFP LRL+R + + + L PG+++ L Y +L Sbjct: 3 HSYYIIYKPYMVLSQFTSVDGKRCLKDLFSP--GRDIYPVGRLDYDSEGLLILTNDAALNHKLLNPLFKHQRKYMVQVDGQITTEVLVKL-QGGIDINI-NGKTYRTQSC---EATLIN----GAPLIPDRNPPVRYRKNIPTSWIELTLTEGKNRQVRKMTAAVGFPTLRLIRSAIGNITIGDLQPGDIKALSGNTIYRQL 193
BLAST of NO03G04780 vs. NCBI_GenBank
Match: WP_108685119.1 (pseudouridine synthase [Chitinophaga sp. LY-1] >PUZ28480.1 pseudouridine synthase [Chitinophaga sp. LY-1]) HSP 1 Score: 199.1 bits (505), Expect = 1.700e-47 Identity = 96/195 (49.23%), Postives = 139/195 (71.28%), Query Frame = 0 Query: 67 YLLLFKPFNVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVNHRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPCPLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRRMVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREE 262 Y +++KP+ VL +FS GK TLAD + P+DVYPVGRLD+DSEG +LLTNDTA+N+R+L+P H+REY VQV+G +T E +++L++ G+D+N+ GKT+R++ C + + P + R PPIR R+ IP W++L ++EG+NRQVR+M A VGFP LRL+R+R+ KL V G+ PG++R L R E Sbjct: 5 YYVIYKPYEVLTRFSPEPGKATLADYF--SVPKDVYPVGRLDFDSEGLLLLTNDTAINNRLLNPKFAHQREYWVQVDGAITPEAITRLQQ-GVDINID-GKTYRTKRCTAM-------AFDHEPAVPDRHPPIRFRRHIPAPWIKLVLSEGKNRQVRKMTAAVGFPTLRLIRYRIGKLTVEGMQPGDMRALTRAE 188 The following BLAST results are available for this feature:
BLAST of NO03G04780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G04780 ID=NO03G04780|Name=NO03G04780|organism=Nannochloropsis oceanica|type=gene|length=1290bpback to top protein sequence of NO03G04780.1 >NO03G04780.1-protein ID=NO03G04780.1-protein|Name=NO03G04780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=269bpback to top Synonyms
Publications
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