NO03G04760, NO03G04760 (gene) Nannochloropsis oceanica

Overview
NameNO03G04760
Unique NameNO03G04760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2052
Alignment locationchr3:1353044..1355199 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1353044..1355199 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028011DUF4476
Homology
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BLAST of NO03G04760 vs. NCBI_GenBank
Match: EWM29913.1 (hypothetical protein Naga_100035g20 [Nannochloropsis gaditana])

HSP 1 Score: 76.6 bits (187), Expect = 1.300e-10
Identity = 45/55 (81.82%), Postives = 45/55 (81.82%), Query Frame = 0 
Query:  207 TLSSYDSTGSLSTIESSASTEVSQRRPFQHRSSLLKPVSEPSGEGVGGKGGGGDE 262
            TLSSYDSTGSLSTIESSASTEVSQRRPFQHRSS LKPVS P     GG G  GDE
Sbjct:  304 TLSSYDSTGSLSTIESSASTEVSQRRPFQHRSSFLKPVSGPP----GGGGSNGDE 354
The following BLAST results are available for this feature:
BLAST of NO03G04760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29913.11.300e-1081.82hypothetical protein Naga_100035g20 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005407NSK005407Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04760.1NO03G04760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G04760.2NO03G04760.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626985gene_1682Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100035g20gene727Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04760.1NO03G04760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G04760.2NO03G04760.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04760 ID=NO03G04760|Name=NO03G04760|organism=Nannochloropsis oceanica|type=gene|length=2052bp
GGTTTTTCATAGTGATATTGCTGCATACTCTTGTCTCGTATGCTTTCTAA
GTTGCCTACCTTTAGCGAAAATCTTTCTTTCCGCATCCACAAAAATGATC
ATGCTCCCTTTACATACAATACTTCCACTACCTATTACATACTTCCACTT
TTTCTGATTCGCTATATCTGCATCCCATCCTCCTTCTCCTCCTCTCCTTC
TCTTTTGTTATGGCGTCTTCGCCAATCCGCCTCCGCTAGCTGAAGTGCTG
GCTCTGGCTCGAATCATCAGCATGGGTCATGTCACACAAACTGAGTCGTG
CTGCCTCTTGTGCTTGACAACACGCGCCTCTTGCATGTCAAAATATCCCG
TAAATTATCTTCGCACCAACCACTTCATTGTATCCAACATGCTGCGCAGG
CACTCGTCGTCATCCTTGTCGTCAAGACTAGCAAGCAAAGCCCAGCACTT
TCTTTTTTGCTTAACGCTTGCGGTCACCCCCTTTCCCTCGCCCCGTCAAA
CCCAACAACCAGTCCTGCCTCCATCATTACCACAACGCAAGCATGTCAAT
CGCTAACATGGGCACCGCCCTGTCGGAAGAGGAGTTCCAGCAGTTGCAGG
ACGTGGTGGCCTCGGCGAGGTAAGACAGTGTCCGGCGTGCTTTTTAATCA
CCGAGCTTGGTCCTCTGTCTCGGGAGCGGCAATGAGGCATGACCATCTCT
GACCTTGAATTGGCAATGTACAACCTCGTTTCCGTCGCAAACACCTTCAA
TGCTCCTCCACATCTCTCTCCCGCCTTTCACCCTCCCTTATTCCCTCAAC
CTGATTAACTCTCTCGTTACACCACAGTGACGACACCACCACGCCGCAGC
TCGCCCTGTCCTTCTTCAAAGAACGAGTGACGGGCAAAGGCAACCGGAAA
GCCCACCTTTCCGCCTCTCAACTCTCCCATCTCATCTCACTTACTACCTC
CTTTGAGAGCAAGAAGTCTCTCGTTGTCCTGCTCGCACCCTACCTCTGCG
CCGATGCCTCCAACTTCAAGGCCATCGTCGATCTTTTCCCCAGCATATCA
GACgtaagttctgtcgttgtaccttgcggcatgttcgcgtagtgctatcc
ttgtgttcattcacgtaacttcttgagaagggacggactgccctgcaaac
tccagtggtagctgcaaccctccaccgtaaatctacactcctcttcattt
atttaccaccacccaccacgcaccaacaatacacagCGCACGGAAATCAA
GAATTTCTTCATGGCCAACAACCCCGCCAAACTGGCAGGTGATCCATCAG
CATCCTCCATCCGCACCGACCCTGGCTCTCTCATCCCGGCAGCTAGTGCT
GCCTCTGCCGCTACGAACATCAGTGCCAGCAACAACGGCAGCAACAACAT
CTTTCCTATGCCACAGCCACGTCGACGAGAGGACCTTCAGCAGCAGCAGC
AGCAACAACAACAGCAGCAGCAGCAGCAGCCAATCACCCCCTTGAGTGTG
ACCTCGGGTATGATTCAGGCACCTGAAGTGATGGGCTCGCCGATGGATTT
AAGCAGCAGCAGCGACGACGAAAGCAGCAGAGATAGCCGTCGGGGGGAAG
GGAGCGATGATGGCAGCAGTTGTAATGGTGGGGAGAGCCGGGGAGCGAGC
ACACTCAATTCGCAGGAGGACTTGGAAGAGCTAGGGGGAGGAGGGGGGGG
AGGCAGGGAGGGAGAAGGGGGTTCTCCTATGTTTGGTGCCAGCAGCACCG
CATCGGTTGCCCCGAGTGTGTTGAGCTTTGTGACGAGTGGAGGGGGAGGA
GGTGGGGGAAGCAGCCTTGCTGGAGGGCCGACGCCGAGCGTGGTTGATAG
TCTGTTGGTGGTAGGGTCGGTTGCCACCACGTTGTCCAGCTATGATTCTA
CGGGATCTTTGTCGACGATAGAAAGCAGTGCATCGACAGAAGTCTCGCAA
CGACGGCCTTTTCAGCATCGATCTTCTTTGCTTAAGCCCGTGTCCGAGCC
ATCAGGGGAAGGAGTGGGAGGGAAAGGAGGAGGAGGGGACGAGGACAGGT
AG
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protein sequence of NO03G04760.1

>NO03G04760.1-protein ID=NO03G04760.1-protein|Name=NO03G04760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MANNPAKLAGDPSASSIRTDPGSLIPAASAASAATNISASNNGSNNIFPM
PQPRRREDLQQQQQQQQQQQQQQPITPLSVTSGMIQAPEVMGSPMDLSSS
SDDESSRDSRRGEGSDDGSSCNGGESRGASTLNSQEDLEELGGGGGGGRE
GEGGSPMFGASSTASVAPSVLSFVTSGGGGGGGSSLAGGPTPSVVDSLLV
VGSVATTLSSYDSTGSLSTIESSASTEVSQRRPFQHRSSLLKPVSEPSGE
GVGGKGGGGDEDR*
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protein sequence of NO03G04760.2

>NO03G04760.2-protein ID=NO03G04760.2-protein|Name=NO03G04760.2|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MSIANMGTALSEEEFQQLQDVVASASDDTTTPQLALSFFKERVTGKGNRK
AHLSASQLSHLISLTTSFESKKSLVVLLAPYLCADASNFKAIVDLFPSIS
DRTEIKNFFMANNPAKLAGDPSASSIRTDPGSLIPAASAASAATNISASN
NGSNNIFPMPQPRRREDLQQQQQQQQQQQQQQPITPLSVTSGMIQAPEVM
GSPMDLSSSSDDESSRDSRRGEGSDDGSSCNGGESRGASTLNSQEDLEEL
GGGGGGGREGEGGSPMFGASSTASVAPSVLSFVTSGGGGGGGSSLAGGPT
PSVVDSLLVVGSVATTLSSYDSTGSLSTIESSASTEVSQRRPFQHRSSLL
KPVSEPSGEGVGGKGGGGDEDR*
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Synonyms
Publications