NO03G04500, NO03G04500 (gene) Nannochloropsis oceanica

Overview
NameNO03G04500
Unique NameNO03G04500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2688
Alignment locationchr3:1292795..1295482 +

Link to JBrowse

Properties
Property NameValue
Description40S ribosomal protein S4
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1292795..1295482 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO:0005198structural molecule activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR000876Ribosomal_S4e
IPR005824KOW
IPR03227740S_S4_C
IPR013845Ribosomal_S4e_central_region
IPR013843Ribosomal_S4e_N
IPR002942S4_RNA-bd
Homology
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: NP_988912.1 (40S ribosomal protein S4 [Xenopus tropicalis] >XP_012823602.1 PREDICTED: 40S ribosomal protein S4 isoform X1 [Xenopus tropicalis] >Q6PBC4.3 RecName: Full=40S ribosomal protein S4 >AAH59771.1 40S ribosomal protein S4 [Xenopus tropicalis] >AAH77671.1 40S ribosomal protein S4 [Xenopus tropicalis] >CAJ83152.1 ribosomal protein s4 x linked [Xenopus tropicalis] >OCA24778.1 hypothetical protein XENTR_v90020229mg [Xenopus tropicalis] >OCA24779.1 hypothetical protein XENTR_v90020229mg [Xenopus tropicalis] >ATO94246.1 40S ribosomal protein S4, partial [synthetic construct])

HSP 1 Score: 370.2 bits (949), Expect = 5.400e-99
Identity = 172/259 (66.41%), Postives = 210/259 (81.08%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SIEK+G+ FRL+YD KGRF + R+   +EE  +KLC+V K  +    IP+LVTHD RT+RYPDPLIKV+DT+++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKDA G++FATR  N+FVIG GNKP +SLP+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRIT--AEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: NP_001084941.1 (40S ribosomal protein S4 [Xenopus laevis] >AAH70591.1 MGC81176 protein [Xenopus laevis])

HSP 1 Score: 369.8 bits (948), Expect = 7.100e-99
Identity = 172/259 (66.41%), Postives = 209/259 (80.69%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SIEK+G+ FRL+YD KGRF + R+   +EE  +KLC+V K  +    IP+LVTHD RT+RYPDPLIKV+DT+++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKDA G+ FATR  N+FVIG GNKP +SLP+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRIT--AEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: NP_990439.1 (40S ribosomal protein S4 [Gallus gallus] >XP_015715522.1 PREDICTED: 40S ribosomal protein S4, X isoform [Coturnix japonica] >XP_021261459.1 40S ribosomal protein S4, X isoform [Numida meleagris] >P47836.2 RecName: Full=40S ribosomal protein S4 >AAB59946.1 ribosomal protein S4 [Gallus gallus] >OXB57171.1 hypothetical protein ASZ78_000572 [Callipepla squamata])

HSP 1 Score: 369.8 bits (948), Expect = 7.100e-99
Identity = 172/259 (66.41%), Postives = 210/259 (81.08%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SIEK+G+ FRL+YD KGRF + R+   +EE  +KLC+V K  +    IP+LVTHD RT+RYPDPLIKV+DT+++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKDA G++FATR  N+FVIG GNKP +SLP+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRIT--AEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: XP_005313894.1 (40S ribosomal protein S4 isoform X2 [Chrysemys picta bellii] >XP_007056310.1 PREDICTED: 40S ribosomal protein S4-like [Chelonia mydas] >XP_024055167.1 40S ribosomal protein S4, X isoform [Terrapene mexicana triunguis])

HSP 1 Score: 369.8 bits (948), Expect = 7.100e-99
Identity = 172/259 (66.41%), Postives = 210/259 (81.08%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SIEK+G+ FRL+YD KGRF + R+   +EE  +KLC+V K  +    IP+LVTHD RT+RYPDPLIKV+DT+++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKDA G++FATR  N+FVIG GNKP +SLP+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRIT--AEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: XP_012636393.1 (40S ribosomal protein S4, X isoform-like [Microcebus murinus])

HSP 1 Score: 369.8 bits (948), Expect = 7.100e-99
Identity = 172/259 (66.41%), Postives = 210/259 (81.08%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SI+K+G+ FRL+YD KGRF + R+    EE  +KLC+V K  +    IP+LVTHD RT+RYPDPLIKV+DT+++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKDA G++FATR  N+FVIG GNKP +SLP+ KGI+L+IVEER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRIT--PEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIVEERDKRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: BAE22507.1 (unnamed protein product [Mus musculus])

HSP 1 Score: 369.8 bits (948), Expect = 7.100e-99
Identity = 172/259 (66.41%), Postives = 210/259 (81.08%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SI+K+G+ FRL+YD KGRF + R+    EE  +KLC+V K L+    IP+LVTHD RT+RYPDPLIKV+DT+++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKDA G++FATR  N+FVIG GNKP +SLP+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRIT--PEEAKYKLCKVRKILVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: XP_011485971.1 (40S ribosomal protein S4, X isoform [Oryzias latipes])

HSP 1 Score: 369.4 bits (947), Expect = 9.200e-99
Identity = 173/259 (66.80%), Postives = 210/259 (81.08%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SIEK+G+ FRL+YD KGRF + R+    EE  +KLC+V K ++    IP+LVTHD RT+RYPDPLIKV+DTV++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKD+ G++FATR  N+FVIG GNKP VSLP+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDVTYPAGFMDVISIEKTGEHFRLIYDVKGRFTVHRIT--GEEAKYKLCKVRKIIIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKPWVSLPRGKGIRLTIAEERDKRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: NP_001232240.1 (putative ribosomal protein S4 [Taeniopygia guttata] >XP_005046291.1 PREDICTED: 40S ribosomal protein S4, X isoform [Ficedula albicollis] >XP_005494011.1 PREDICTED: 40S ribosomal protein S4, X isoform [Zonotrichia albicollis] >XP_005527404.1 PREDICTED: 40S ribosomal protein S4, X isoform [Pseudopodoces humilis] >XP_009088486.1 PREDICTED: 40S ribosomal protein S4 [Serinus canaria] >XP_014746529.1 PREDICTED: 40S ribosomal protein S4, X isoform [Sturnus vulgaris] >XP_014811481.1 PREDICTED: 40S ribosomal protein S4, X isoform [Calidris pugnax] >XP_015481629.1 PREDICTED: 40S ribosomal protein S4, X isoform [Parus major] >XP_021403440.1 40S ribosomal protein S4, X isoform [Lonchura striata domestica] >ACH43711.1 putative ribosomal protein S4 [Taeniopygia guttata])

HSP 1 Score: 369.4 bits (947), Expect = 9.200e-99
Identity = 173/259 (66.80%), Postives = 209/259 (80.69%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SIEK+G+ FRL+YD KGRF + R+    EE  +KLC+V K  +    IP+LVTHD RT+RYPDPLIKV+DTV++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKDA G++FATR  N+FVIG GNKP +SLP+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRIT--PEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: XP_010747631.1 (PREDICTED: 40S ribosomal protein S4 [Larimichthys crocea] >KKF25813.1 40S ribosomal protein S4 [Larimichthys crocea])

HSP 1 Score: 369.4 bits (947), Expect = 9.200e-99
Identity = 172/259 (66.41%), Postives = 211/259 (81.47%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SIEK+G+ FRL+YD KGRF + R+   +EE  +KLC+V K ++    IP+LVTHD RT+RYPDPLIKV+DT+++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKD+ G++FATR  N+FVIG GNKP VSLP+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDVTYPAGFMDVISIEKTGEHFRLIYDVKGRFTVHRIT--AEEAKYKLCKVKKLMVGTKGIPHLVTHDARTIRYPDPLIKVNDTIRIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKPWVSLPRGKGIRLTIAEERDKRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: XP_015240961.1 (PREDICTED: 40S ribosomal protein S4, X isoform [Cyprinodon variegatus])

HSP 1 Score: 369.4 bits (947), Expect = 9.200e-99
Identity = 172/259 (66.41%), Postives = 211/259 (81.47%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SIEK+G+ FRL+YD KGRF + R+   +EE  +KLC+V K L+    IP+LVTHD RT+RYPDPLIKV+DTV++D+ TGKI DFIKFD GNL  +T G N GR+G+I + ERHPGSFD++ VKD+ G++FATR  N+FVIG GNKP VS+P+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDVTYPAGFMDVISIEKTGEHFRLIYDVKGRFTVHRIT--AEEAKYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLETGKITDFIKFDTGNLCMVTGGANLGRIGIITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKPWVSMPRGKGIRLTIAEERDKRLA 257
The following BLAST results are available for this feature:
BLAST of NO03G04500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
NP_988912.15.400e-9966.4140S ribosomal protein S4 [Xenopus tropicalis] >XP_... [more]
NP_001084941.17.100e-9966.4140S ribosomal protein S4 [Xenopus laevis] >AAH7059... [more]
NP_990439.17.100e-9966.4140S ribosomal protein S4 [Gallus gallus] >XP_01571... [more]
XP_005313894.17.100e-9966.4140S ribosomal protein S4 isoform X2 [Chrysemys pic... [more]
XP_012636393.17.100e-9966.4140S ribosomal protein S4, X isoform-like [Microceb... [more]
BAE22507.17.100e-9966.41unnamed protein product [Mus musculus][more]
XP_011485971.19.200e-9966.8040S ribosomal protein S4, X isoform [Oryzias latip... [more]
NP_001232240.19.200e-9966.80putative ribosomal protein S4 [Taeniopygia guttata... [more]
XP_010747631.19.200e-9966.41PREDICTED: 40S ribosomal protein S4 [Larimichthys ... [more]
XP_015240961.19.200e-9966.41PREDICTED: 40S ribosomal protein S4, X isoform [Cy... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005446NSK005446Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04500.1NO03G04500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573004gene_1653Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100106g2gene756Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04500.1NO03G04500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04500 ID=NO03G04500|Name=NO03G04500|organism=Nannochloropsis oceanica|type=gene|length=2688bp
GAGCACGATGCATGATCATGGTGGTGAGCGGATTGTGGGGGTGTCTTTAT
ATTCACAGTCATCGAGCCATGCCCCGACCAAGAACCCAATCTGATCCATG
GAGAATCACACGGACAACCTAAGCAAGTGAGTGAAGCGACCGACCGGACC
GATCACTTGTGGGCGATGGATCGACGATCGAAGGTCGCACAGGCCAAACG
CCTCATTATGCTTGGCTCCCCCGCTCTCCGCCTCTCCTCCCCGTCCACAC
AAGCGATGGCCCTCCGCGGTGCCCTTTTTCTTCTTCCCTATCACGCCACC
CATGCTCGCTACCATTTCCCAATCAAGTCGGCACTGTTTTCTTTGAGCCC
AGGTGTGGGCTTGCATGGAGTGGAGAAGCTGTGGTGGTGGTGCCTTCATC
ACAGCCATTTCTCTTGTCACCAGCCAACTCTCTGCAACTCCCATCATCAT
CCACCCTTCTTCCATGCCTCATTGTTTCTCATGCCCTTCCTGCCGTACAT
CAACCCCACCAACACAATCACAGGAGAGCGCTCTTCTTCATTGTTTGTCT
CGCCTTAGTGAATCATGgtacgttttgggtcgtcgcggaagggaggagga
gggagggggggaggggggaaggggaggtggaagaaaaaaagggcgtgatg
tatgtctgtcggccaacgttgtcccgcttgttcacgatggtcaacgttcc
tgtgcaatgtaagtgcatagcttttaaagggacggaggggtaagtgctgg
tcctttcatcgcaggtgcggagagagacagcagcgtccgtcaggacacga
gaagaaatgaaaggttcggccacttgcttggatggtgagatgctttgtcc
cggctgcgcagcttggaaccggcgattgctgccaaaccccgtgtcctgat
gacgagacagacacgcaggctcagggatggggaagagctagccggtctaa
tctctctgggtgtggacatcctgctgccagaggcggacggatgattagca
tagggaccgcaatgacagggatgacctctttcttgtttttctctataaac
ccatcactcatcccctccctccttccctccttccctccttccttgcctcc
cacctcagGCGCGCGGCCCGAAGAAGCACCTCAAGCGGGTCAATGCCCCC
CGGCATTGGATGCTGTCCAAGATGGATGGCATCTTTGCCCCCCGTCCCTC
CACGGGCCCTCACAAGCTCCGTGAATCCCTGCCTCTCATTCTCATTCTCC
GCAACCGTCTTAAGTATGCCTTGACCAAGGCAGAGGCTAATGCGATTTGC
ATGCAGAAGCTAGTGAAGGTTGATGGGAAGGTCCGCACGGACCTGAACTA
CCCCGCTGGCTTCATGGACGTCGTCTCGATTGAGAAGAGCGGGGACGAGT
TCCGCCTCCTCTACGACCCGAAGGGGCGTTTCTACCTGCAACGGTTGGAG
GAGGGCAGCGAGGAGAGGAATTTCAAGCTTTGCCGAGTGAACAAGAACTT
GATGTCTGCCAACAAAATCCCCTACCTGGTGACTCACGACGGTCGTACTC
TGCGTTACCCGGACCCCCTCATTAAGGTGGACGACACGGTGAAGGTTGAT
GTCCGCACGGGCAAGATTTTGGACTTCATTAAATTCGACTTGGGCAATCT
GGTGTACCTGACCCGAGGGCACAACGCGGGGAGAGTGGGAGTGATCCAGC
ACATTGAGCGGCACCCGGGCTCGTTCGATATCATCACGGTGAAGGACGCG
CAGGGCCACACCTTTGCCACGCGTCGACAGAATGTATTTGTGATTGGCGT
AGGGAACAAGCCGATGGTGTCTCTGCCCAAGCAGAAGGGTATCAAGCTCT
CGATCGTGGAGGAGCGCAATGCGCGACGTGCGCATTAAGTCGTGAGAGGA
AGGGAAGGAAGAAGGAAGGAACGAGGGAGTGAGGATGTGCGGACGTGAGC
CTCTGTTGTGGATGTGAGCGTCTGTAGGTTTCTCGATTTGTTCTTCAAGG
TGCTCTGGAGGAGAAAGGAGGGAGAGAGGGAGCGATGTCATCTCCCGAAC
TTTCCTTTCTTATCTTCTGGCCTTCTAGCGCGAATTTCTCTCGATAGGGT
GAAGAGGGAAGAGGCAATCATGCCAGGGGGAAGACCCCGAACCAAAACTC
ACAAACACATGAAACCAAAACCACCAAAAAAGGAGAAAAGAAGAAGAAAG
GACGAGAACGCCACAAATCGCCGTTGCAGAGCAAGTCGGTTCATTCATCT
TATTTTTGATCAGCTGAAGTGCTGATGTAGTAGCATTGGTTCTGCTACTC
AGAGTCTGCCGGGTGTTCTCGCAGCCCTCTTTTCTTTAGTTTTTCTCTGA
TGCCCTCCATCCCCTCCTCAATCGGTTTCCATTTTGGTCATTTACCTATT
TTCACACATTGATAAACTTTACTCCACCCAGCCTTACAGGTCCTTGAAGA
ACGACTCGGCAGCCGTCATCCGCATTTTTTTACTGCCCTTCTGCTGCCCT
CCTTTCTTCCCGGGCTCTTGCTCCTCACTGCTGCTGCTACTGGCGCTATT
GCCACCTGCGCCGTCCTCATCCTCTCCCTCCTCTCCATTTTCATCACCTT
TATCATCTTCGTCCTCGTCCTCTTCATCCTCTTCATCATCACTTCCACTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
back to top

protein sequence of NO03G04500.1

>NO03G04500.1-protein ID=NO03G04500.1-protein|Name=NO03G04500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRN
RLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFR
LLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLR
YPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHI
ERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSI
VEERNARRAH*
back to top
Synonyms
Publications