NO03G04500, NO03G04500 (gene) Nannochloropsis oceanica

Overview
NameNO03G04500
Unique NameNO03G04500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2688
Alignment locationchr3:1292795..1295482 +

Link to JBrowse

Properties
Property NameValue
Description40S ribosomal protein S4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1292795..1295482 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO:0005198structural molecule activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR000876Ribosomal_S4e
IPR005824KOW
IPR03227740S_S4_C
IPR013845Ribosomal_S4e_central_region
IPR013843Ribosomal_S4e_N
IPR002942S4_RNA-bd
Homology
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: EWM29882.1 (40s ribosomal protein s4 [Nannochloropsis gaditana])

HSP 1 Score: 502.3 bits (1292), Expect = 9.100e-139
Identity = 243/258 (94.19%), Postives = 253/258 (98.06%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARR 259
            MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLN+PAGFMDV++IEKSGDEFRLLYD KGRFYLQRLEEGSEERNFKLCRVNKN MSANKIPY+VTHDGRT+RYPDPLIK+DDTVKVD+RTGKILDFIKFDLGNLVYLTRGHN GRVG+IQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIG GNKPMVSLPK KGIKLSIVEER+AR+
Sbjct:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERSARK 258
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: CBJ29820.1 (40S ribosomal protein S4 [Ectocarpus siliculosus])

HSP 1 Score: 390.2 bits (1001), Expect = 5.100e-105
Identity = 181/257 (70.43%), Postives = 219/257 (85.21%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNAR 258
            M RGPKKH+KR+NAP+HW+L KM+GI+AP+PS GPH  RE LPL++I+RNRLKYALT +EAN ICMQKL+KVDGKVRTD+N+PAGFMDVV I+KSGD FRLLY+ KGRF L R+ E  EE  FKLCRVNK  MS NKIPYLVTHDGRT+RYPDPLIKV+DT+KVD+ TGK +D IKF++GN+  + RG NAGRVG++QHIERHPGSFDI++VKD  GH FATR QN+F +G G + MVSLPK KG+KL+I+EE+ A+
Sbjct:    1 MGRGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISE--EESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRAMVSLPKGKGVKLTILEEKAAK 255
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: KFM79678.1 (40S ribosomal protein S4, partial [Stegodyphus mimosarum])

HSP 1 Score: 377.9 bits (969), Expect = 2.600e-101
Identity = 178/254 (70.08%), Postives = 212/254 (83.46%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEER 255
            MARGPKKHLKR+NAP+ WML K+ G+FAPRPSTGPHKLRESLPLI++LRNRLKYALT +E   I MQ+L+KVDGKVRTD NYPAGFMDV++IEK+G+ FRLLYD KGRF L R+   +EE  +KLCRV +  +    IP+LVTHDGRT+RYPDPLIKV DT+++D+ TGKI+DFIKFD+GNLV +T GHN GRVG I   ERHPGSFDI+ VKD+QGH+FATR   VFVIG GNKP +SLP+ KG+KLS+ EER
Sbjct:    1 MARGPKKHLKRLNAPKSWMLDKLGGVFAPRPSTGPHKLRESLPLIIMLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDSNYPAGFMDVITIEKTGEFFRLLYDVKGRFILHRIT--AEEAKYKLCRVKRVQVGPKGIPFLVTHDGRTIRYPDPLIKVHDTIQLDIGTGKIMDFIKFDIGNLVMVTGGHNLGRVGTITSRERHPGSFDIVHVKDSQGHSFATRLNYVFVIGKGNKPFISLPRGKGVKLSVAEER 252
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: XP_006124705.1 (PREDICTED: 40S ribosomal protein S4, X isoform [Pelodiscus sinensis])

HSP 1 Score: 371.3 bits (952), Expect = 2.400e-99
Identity = 173/259 (66.80%), Postives = 211/259 (81.47%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SIEK+G+ FRL+YD KGRF + R+   +EE  +KLC+V K L+    IP+LVTHD RT+RYPDPLIKV+DT+++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKDA G++FATR  N+FVIG GNKP +SLP+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRIT--AEEAKYKLCKVRKILVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: NP_001090472.1 (40S ribosomal protein S4 [Xenopus laevis] >XP_018087661.1 PREDICTED: 40S ribosomal protein S4 isoform X1 [Xenopus laevis] >P49401.4 RecName: Full=40S ribosomal protein S4 >AAI06701.1 MGC132392 protein [Xenopus laevis] >OCT65689.1 hypothetical protein XELAEV_18041928mg [Xenopus laevis])

HSP 1 Score: 370.9 bits (951), Expect = 3.200e-99
Identity = 173/259 (66.80%), Postives = 209/259 (80.69%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SIEK+G+ FRL+YD KGRF + R+   SEE  +KLC+V K  +    IP+LVTHD RT+RYPDPLIKV+DT+++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKDA G+ FATR  N+FVIG GNKP +SLP+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRIT--SEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: XP_015908355.1 (40S ribosomal protein S4 [Parasteatoda tepidariorum])

HSP 1 Score: 370.9 bits (951), Expect = 3.200e-99
Identity = 173/259 (66.80%), Postives = 212/259 (81.85%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKR+ AP+ WML K+ G+FAPRPSTGPHKLRESLPLI+++RNRLKYALT AE   I MQ+L+KVDGKVRTD N+P+GFMD ++IEK+G+ FRLLYD KGRF L R+   +EE  +KLCRV +  +    IP+LVTHDGRT+RYPDPLIKV DT+++D+ TGKI+DFIKFD+GNLV +T GHN GRVG I   ERHPGSFDI+ VKD+ GH+FATR   +FVIG GNKP +SLP+ KG++LS+ EER+ R A
Sbjct:    1 MARGPKKHLKRLQAPKSWMLDKLGGVFAPRPSTGPHKLRESLPLIIMIRNRLKYALTNAEVTKIVMQRLIKVDGKVRTDKNFPSGFMDTITIEKTGEYFRLLYDVKGRFLLHRIT--AEEAKYKLCRVKRVQVGPKGIPFLVTHDGRTIRYPDPLIKVHDTIQLDIATGKIMDFIKFDIGNLVMVTGGHNLGRVGTITSRERHPGSFDIVHVKDSLGHSFATRLSYIFVIGKGNKPFISLPRGKGVRLSVAEERDRRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: XP_019506604.1 (PREDICTED: 40S ribosomal protein S4, X isoform [Hipposideros armiger] >XP_019506605.1 PREDICTED: 40S ribosomal protein S4, X isoform [Hipposideros armiger] >XP_019506606.1 PREDICTED: 40S ribosomal protein S4, X isoform [Hipposideros armiger] >XP_019506607.1 PREDICTED: 40S ribosomal protein S4, X isoform [Hipposideros armiger] >XP_019506608.1 PREDICTED: 40S ribosomal protein S4, X isoform [Hipposideros armiger] >XP_019506609.1 PREDICTED: 40S ribosomal protein S4, X isoform [Hipposideros armiger] >XP_019603869.1 PREDICTED: 40S ribosomal protein S4, X isoform-like [Rhinolophus sinicus] >XP_019603870.1 PREDICTED: 40S ribosomal protein S4, X isoform-like [Rhinolophus sinicus] >XP_019603871.1 PREDICTED: 40S ribosomal protein S4, X isoform-like [Rhinolophus sinicus])

HSP 1 Score: 370.5 bits (950), Expect = 4.100e-99
Identity = 172/259 (66.41%), Postives = 209/259 (80.69%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SI+K+G+ FRL+YD KGRF + R+    EE  +KLC+V K  +    IP+LVTHD RT+RYPDPLIKV+DT+++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKDA GH+FATR  N+FVIG GNKP +SLP+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDVTYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRIT--PEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGHSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: NP_001233602.1 (40S ribosomal protein S4 [Cricetulus griseus] >P47961.2 RecName: Full=40S ribosomal protein S4 >BAA05485.1 ribosomal protein S4 [Cricetulus griseus])

HSP 1 Score: 370.2 bits (949), Expect = 5.400e-99
Identity = 172/259 (66.41%), Postives = 210/259 (81.08%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SI+K+G+ FRL+YD KGRF + R+   SEE  +KLC+V K  +    IP+LVTHD RT+RYPDPLIKV+DT+++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKDA G++FATR  N+FVIG GNKP +SLP+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRIT--SEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: XP_010565368.1 (PREDICTED: 40S ribosomal protein S4, X isoform [Haliaeetus leucocephalus] >XP_011598047.1 PREDICTED: 40S ribosomal protein S4, X isoform [Aquila chrysaetos canadensis] >XP_017670952.1 PREDICTED: 40S ribosomal protein S4 [Lepidothrix coronata])

HSP 1 Score: 370.2 bits (949), Expect = 5.400e-99
Identity = 173/259 (66.80%), Postives = 210/259 (81.08%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SIEK+G+ FRL+YD KGRF + R+   +EE  +KLC+V K  +    IP+LVTHD RT+RYPDPLIKV+DTV++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKDA G++FATR  N+FVIG GNKP +SLP+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRIT--AEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLA 257
[Close]
BLAST of NO03G04500 vs. NCBI_GenBank
Match: XP_015797466.1 (PREDICTED: 40S ribosomal protein S4 [Nothobranchius furzeri])

HSP 1 Score: 370.2 bits (949), Expect = 5.400e-99
Identity = 173/259 (66.80%), Postives = 211/259 (81.47%), Query Frame = 0 
Query:    1 MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFRLLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLRYPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSIVEERNARRA 260
            MARGPKKHLKRV AP+HWML K+ G+FAPRPSTGPHKLRE LPLI+ LRNRLKYALT  E   ICMQ+ +K+DGKVRTD+ YPAGFMDV+SIEK+G+ FRL+YD KGRF + R+   +EE  +KLC+V K L+    IP+LVTHD RT+RYPDPLIKV+DTV++D+ TGKI DFIKFD GNL  +T G N GR+GVI + ERHPGSFD++ VKD+ G++FATR  N+FVIG GNKP VS+P+ KGI+L+I EER+ R A
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLIYDVKGRFTVHRIT--AEEAKYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKPWVSMPRGKGIRLTIAEERDKRLA 257
The following BLAST results are available for this feature:
BLAST of NO03G04500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29882.19.100e-13994.1940s ribosomal protein s4 [Nannochloropsis gaditana... [more]
CBJ29820.15.100e-10570.4340S ribosomal protein S4 [Ectocarpus siliculosus][more]
KFM79678.12.600e-10170.0840S ribosomal protein S4, partial [Stegodyphus mim... [more]
XP_006124705.12.400e-9966.80PREDICTED: 40S ribosomal protein S4, X isoform [Pe... [more]
NP_001090472.13.200e-9966.8040S ribosomal protein S4 [Xenopus laevis] >XP_0180... [more]
XP_015908355.13.200e-9966.8040S ribosomal protein S4 [Parasteatoda tepidarioru... [more]
XP_019506604.14.100e-9966.41PREDICTED: 40S ribosomal protein S4, X isoform [Hi... [more]
NP_001233602.15.400e-9966.4140S ribosomal protein S4 [Cricetulus griseus] >P47... [more]
XP_010565368.15.400e-9966.80PREDICTED: 40S ribosomal protein S4, X isoform [Ha... [more]
XP_015797466.15.400e-9966.80PREDICTED: 40S ribosomal protein S4 [Nothobranchiu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005446NSK005446Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04500.1NO03G04500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573004gene_1653Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100106g2gene756Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04500.1NO03G04500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04500 ID=NO03G04500|Name=NO03G04500|organism=Nannochloropsis oceanica|type=gene|length=2688bp
GAGCACGATGCATGATCATGGTGGTGAGCGGATTGTGGGGGTGTCTTTAT
ATTCACAGTCATCGAGCCATGCCCCGACCAAGAACCCAATCTGATCCATG
GAGAATCACACGGACAACCTAAGCAAGTGAGTGAAGCGACCGACCGGACC
GATCACTTGTGGGCGATGGATCGACGATCGAAGGTCGCACAGGCCAAACG
CCTCATTATGCTTGGCTCCCCCGCTCTCCGCCTCTCCTCCCCGTCCACAC
AAGCGATGGCCCTCCGCGGTGCCCTTTTTCTTCTTCCCTATCACGCCACC
CATGCTCGCTACCATTTCCCAATCAAGTCGGCACTGTTTTCTTTGAGCCC
AGGTGTGGGCTTGCATGGAGTGGAGAAGCTGTGGTGGTGGTGCCTTCATC
ACAGCCATTTCTCTTGTCACCAGCCAACTCTCTGCAACTCCCATCATCAT
CCACCCTTCTTCCATGCCTCATTGTTTCTCATGCCCTTCCTGCCGTACAT
CAACCCCACCAACACAATCACAGGAGAGCGCTCTTCTTCATTGTTTGTCT
CGCCTTAGTGAATCATGgtacgttttgggtcgtcgcggaagggaggagga
gggagggggggaggggggaaggggaggtggaagaaaaaaagggcgtgatg
tatgtctgtcggccaacgttgtcccgcttgttcacgatggtcaacgttcc
tgtgcaatgtaagtgcatagcttttaaagggacggaggggtaagtgctgg
tcctttcatcgcaggtgcggagagagacagcagcgtccgtcaggacacga
gaagaaatgaaaggttcggccacttgcttggatggtgagatgctttgtcc
cggctgcgcagcttggaaccggcgattgctgccaaaccccgtgtcctgat
gacgagacagacacgcaggctcagggatggggaagagctagccggtctaa
tctctctgggtgtggacatcctgctgccagaggcggacggatgattagca
tagggaccgcaatgacagggatgacctctttcttgtttttctctataaac
ccatcactcatcccctccctccttccctccttccctccttccttgcctcc
cacctcagGCGCGCGGCCCGAAGAAGCACCTCAAGCGGGTCAATGCCCCC
CGGCATTGGATGCTGTCCAAGATGGATGGCATCTTTGCCCCCCGTCCCTC
CACGGGCCCTCACAAGCTCCGTGAATCCCTGCCTCTCATTCTCATTCTCC
GCAACCGTCTTAAGTATGCCTTGACCAAGGCAGAGGCTAATGCGATTTGC
ATGCAGAAGCTAGTGAAGGTTGATGGGAAGGTCCGCACGGACCTGAACTA
CCCCGCTGGCTTCATGGACGTCGTCTCGATTGAGAAGAGCGGGGACGAGT
TCCGCCTCCTCTACGACCCGAAGGGGCGTTTCTACCTGCAACGGTTGGAG
GAGGGCAGCGAGGAGAGGAATTTCAAGCTTTGCCGAGTGAACAAGAACTT
GATGTCTGCCAACAAAATCCCCTACCTGGTGACTCACGACGGTCGTACTC
TGCGTTACCCGGACCCCCTCATTAAGGTGGACGACACGGTGAAGGTTGAT
GTCCGCACGGGCAAGATTTTGGACTTCATTAAATTCGACTTGGGCAATCT
GGTGTACCTGACCCGAGGGCACAACGCGGGGAGAGTGGGAGTGATCCAGC
ACATTGAGCGGCACCCGGGCTCGTTCGATATCATCACGGTGAAGGACGCG
CAGGGCCACACCTTTGCCACGCGTCGACAGAATGTATTTGTGATTGGCGT
AGGGAACAAGCCGATGGTGTCTCTGCCCAAGCAGAAGGGTATCAAGCTCT
CGATCGTGGAGGAGCGCAATGCGCGACGTGCGCATTAAGTCGTGAGAGGA
AGGGAAGGAAGAAGGAAGGAACGAGGGAGTGAGGATGTGCGGACGTGAGC
CTCTGTTGTGGATGTGAGCGTCTGTAGGTTTCTCGATTTGTTCTTCAAGG
TGCTCTGGAGGAGAAAGGAGGGAGAGAGGGAGCGATGTCATCTCCCGAAC
TTTCCTTTCTTATCTTCTGGCCTTCTAGCGCGAATTTCTCTCGATAGGGT
GAAGAGGGAAGAGGCAATCATGCCAGGGGGAAGACCCCGAACCAAAACTC
ACAAACACATGAAACCAAAACCACCAAAAAAGGAGAAAAGAAGAAGAAAG
GACGAGAACGCCACAAATCGCCGTTGCAGAGCAAGTCGGTTCATTCATCT
TATTTTTGATCAGCTGAAGTGCTGATGTAGTAGCATTGGTTCTGCTACTC
AGAGTCTGCCGGGTGTTCTCGCAGCCCTCTTTTCTTTAGTTTTTCTCTGA
TGCCCTCCATCCCCTCCTCAATCGGTTTCCATTTTGGTCATTTACCTATT
TTCACACATTGATAAACTTTACTCCACCCAGCCTTACAGGTCCTTGAAGA
ACGACTCGGCAGCCGTCATCCGCATTTTTTTACTGCCCTTCTGCTGCCCT
CCTTTCTTCCCGGGCTCTTGCTCCTCACTGCTGCTGCTACTGGCGCTATT
GCCACCTGCGCCGTCCTCATCCTCTCCCTCCTCTCCATTTTCATCACCTT
TATCATCTTCGTCCTCGTCCTCTTCATCCTCTTCATCATCACTTCCACTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
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protein sequence of NO03G04500.1

>NO03G04500.1-protein ID=NO03G04500.1-protein|Name=NO03G04500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRN
RLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFR
LLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLR
YPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHI
ERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSI
VEERNARRAH*
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Synonyms
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