NO03G04460, NO03G04460 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G04460 vs. NCBI_GenBank
Match: EWM29878.1 (WD40-repeat-containing domain protein [Nannochloropsis gaditana]) HSP 1 Score: 286.2 bits (731), Expect = 1.500e-73 Identity = 149/258 (57.75%), Postives = 192/258 (74.42%), Query Frame = 0 Query: 1 MQNDTRFFDEASYLSQIREEALTQESTIFHTAHCPQNRFLLASSNQGRLAIWDLSSYLFPKGPSSSLSSPSFYSSTSYPIASSSSYPLVLQGFQRQLHLNQARLYSAELRRKGYPCLSLQVSHHAINHILFLGQDTAQPLLVLAGDDGIYSWPWKTILNLLPRTCDEEDGVEG--TDNEPCSS-TTINIGPPSSILKALPSQKAFPFLTESNQITSSLPPSSSSSS--IFSACGDALVRNWDIETQQCTSLLIGHTGY 254 M +D+ FFD+A+Y+S IR+EA T+E+TIFHTAHCPQNR+LLASSN+GR+AIWDLS YLFP +S L+ + S AS +S PL+ +GF R L + R++ A LRRKG+PCLS+QVS AINH++FLG+ + PLLVLAGDDGIY WPW IL LL + E+ G++ T P +S T ++G PS++LKALPSQ+A+PFLTESNQ+ S SSS+S FSACGDALVR WD+ETQ+C S+LIGHTG+ Sbjct: 57 MPDDSHFFDDAAYISHIRDEAATKEATIFHTAHCPQNRYLLASSNKGRIAIWDLSFYLFPAASASLLT-----TCPSLSFASRAS-PLLTRGFSRHLRQYECRMFPAALRRKGFPCLSIQVSERAINHVMFLGEGSTSPLLVLAGDDGIYVWPWAHILKLLSQAIGEDGGMDQDCTQGIPGNSCITQDLGAPSALLKALPSQEAWPFLTESNQVAPSFHSSSSTSPSVCFSACGDALVRQWDLETQKCASVLIGHTGF 308
BLAST of NO03G04460 vs. NCBI_GenBank
Match: KMZ61395.1 (WD repeat-containing protein DWA1 [Zostera marina]) HSP 1 Score: 79.0 bits (193), Expect = 3.700e-11 Identity = 82/291 (28.18%), Postives = 122/291 (41.92%), Query Frame = 0 Query: 4 DTRFFDEASYLSQIREEALTQESTIFHTAHCPQNRFLLASSNQGRLAIWDLSSYLFPKGPSSSLSSPSFYSSTSYPIASSSSYPLVLQGFQRQLHLN-QARLYSAELRRKGYPCLSLQVSHHAINHILFLGQDTAQPLLVLAGDDG-IYSWPWKTILNLLPRTCDEEDGVEGTDNEPCSSTTINIGPPSSILKALPSQKAFPF-----LTESNQITSSLPPSSSSSSIFSACGDALVRNWDIETQQCTSLLIGHTGYVHAVKSLGIETTAPGVVVSGGEDGMVGVWDVRTG 288 D R +DE Y S I +E T+F T P +++N + SS G SS S PS +S +++ H+N A S L P +Q ++F G D LL+ GDDG I+ W W+ ILN + P S+TT+N IL + Q+ P+ + E+N ++ ++ SIFSA GDA WD+ET + GHT Y+H V I + +++G EDG V +WD ++G Sbjct: 14 DVRDWDEDRYRSSILQERENGCRTVFRTVFAPTK----STTNPTADVLIAASS----DGSVSSYSIPSCIAS------------------KKEQHINPNAHQISQPLASLAEPMCFIQGHKGPAYDVMFYG-DEEDSLLLSCGDDGRIFGWKWQEILN-------------SELSMPTSATTLN-----PILDLMNPQQRGPWDALSPIPENN----AMDVNTQEGSIFSAAGDACAYCWDVETGIRKQIFRGHTDYLHCV----ISMKSSNQIITGSEDGTVRIWDSKSG 251
BLAST of NO03G04460 vs. NCBI_GenBank
Match: XP_016469005.1 (PREDICTED: THO complex subunit 6-like [Nicotiana tabacum]) HSP 1 Score: 70.1 bits (170), Expect = 1.700e-8 Identity = 76/298 (25.50%), Postives = 121/298 (40.60%), Query Frame = 0 Query: 4 DTRFFDEASYLSQIREEALTQESTIFHTAHCPQNR--------FLLASSNQGRLAIWDLSSYLFPKGPSSSLSSPSFYSSTSYPIASSSSYPLVLQGFQRQLHLNQARLYSAELRRKGYPCLSLQVSHHAINHILFLGQDTAQPLLVLAGDDG-IYSWPWKTILNLLPRTCDEEDGVEGTDNEPCSSTTINIGPPSSILKALPSQKAFPF-----LTESNQITSSLPPSSSSSSIFSACGDALVRNWDIETQQCTSLLIGHTGYVHAVKSLGIETTAPGVVVSGGEDGMVGVWDVRTG 288 D R +DE Y I E +Q T+F TA P ++A + G +A + +SS L S S S + ++ P+A SS ++QG + + F G D LL+ GDDG I W WK +L ++ V+G +EP IL + Q+ P+ + E+N + ++ + SIF+A GD+ WD+E + +L GH+ Y+H + + + V++G EDG +WD RTG Sbjct: 2 DCRNWDEDVYRDSILLERESQCRTVFRTAFAPNPNPNHNSYPDLIVAGISDGTIASYSISSCLV------SSISHSNWKNSLVPVAESS---WLVQGHDGPAY-----------------------------DVKFYGND-EDSLLLSCGDDGRIRGWKWKELLG-------SKEPVQGGTSEP-------------ILDLVNPQQKGPWGALSPIPENN----CMAVNTQTGSIFAAAGDSCAYCWDVEKNEIKMVLKGHSDYLHCI----VARNSHNQVITGSEDGTARIWDCRTG 232
BLAST of NO03G04460 vs. NCBI_GenBank
Match: XP_009757032.1 (PREDICTED: THO complex subunit 6 [Nicotiana sylvestris]) HSP 1 Score: 69.3 bits (168), Expect = 2.900e-8 Identity = 75/298 (25.17%), Postives = 118/298 (39.60%), Query Frame = 0 Query: 4 DTRFFDEASYLSQIREEALTQESTIFHTAHCPQNR--------FLLASSNQGRLAIWDLSSYLFPKGPSSSLSSPSFYSSTSYPIASSSSYPLVLQGFQRQLHLNQARLYSAELRRKGYPCLSLQVSHHAINHILFLGQDTAQPLLVLAGDDG-IYSWPWKTILNLLPRTCDEEDGVEGTDNEPCSSTTINIGPPSSILKALPSQKAFPF-----LTESNQITSSLPPSSSSSSIFSACGDALVRNWDIETQQCTSLLIGHTGYVHAVKSLGIETTAPGVVVSGGEDGMVGVWDVRTG 288 D R +DE Y I E +Q T+F TA P ++A + G +A + +SS L +SL P+A SS ++QG + + F G D LL+ GDDG I W WK +L ++ V+G +EP IL + Q+ P+ + E+N + ++ + SIF+A GD+ WD+E + +L GH+ Y+H + + + V++G EDG +WD RTG Sbjct: 6 DCRNWDEDVYRDSILLERESQCRTVFRTAFAPNPNPNHNSYPDLIVAGISDGTIASYSISSCLDLSSAGNSL----------VPVAESS---WLVQGHDGPAY-----------------------------DVKFYGND-EDSLLLSCGDDGRIRGWKWKELLG-------SKEPVQGGTSEP-------------ILDLVNPQQKGPWGALSPIPENN----CMAVNTQTGSIFAAAGDSCAYCWDVEKNEIKMVLKGHSDYLHCI----VARNSHNQVITGSEDGTARIWDCRTG 232
BLAST of NO03G04460 vs. NCBI_GenBank
Match: XP_019249156.1 (PREDICTED: THO complex subunit 6 [Nicotiana attenuata]) HSP 1 Score: 69.3 bits (168), Expect = 2.900e-8 Identity = 75/298 (25.17%), Postives = 118/298 (39.60%), Query Frame = 0 Query: 4 DTRFFDEASYLSQIREEALTQESTIFHTAHCPQNR--------FLLASSNQGRLAIWDLSSYLFPKGPSSSLSSPSFYSSTSYPIASSSSYPLVLQGFQRQLHLNQARLYSAELRRKGYPCLSLQVSHHAINHILFLGQDTAQPLLVLAGDDG-IYSWPWKTILNLLPRTCDEEDGVEGTDNEPCSSTTINIGPPSSILKALPSQKAFPF-----LTESNQITSSLPPSSSSSSIFSACGDALVRNWDIETQQCTSLLIGHTGYVHAVKSLGIETTAPGVVVSGGEDGMVGVWDVRTG 288 D R +DE Y I E +Q T+F TA P ++A + G +A + +SS L +SL P+A SS ++QG + + F G D LL+ GDDG I W WK +L ++ V+G +EP IL + Q+ P+ + E+N + ++ + SIF+A GD+ WD+E + +L GH+ Y+H + + + V++G EDG +WD RTG Sbjct: 6 DCRNWDEDVYRDSILLERESQCRTVFRTAFAPNPNPNHNSYPDLIVAGISDGTIASYSISSCLDLSSAGNSL----------VPVAESS---WLVQGHDGPAY-----------------------------DVKFYGND-EDSLLLSCGDDGRIRGWKWKELLG-------SKEPVQGGTSEP-------------ILDLVNPQQKGPWGALSPIPENN----CMAVNTQTGSIFAAAGDSCAYCWDVEKNEIKMVLKGHSDYLHCI----VARNSHNQVITGSEDGTARIWDCRTG 232
BLAST of NO03G04460 vs. NCBI_GenBank
Match: XP_009593915.1 (PREDICTED: THO complex subunit 6 [Nicotiana tomentosiformis] >XP_016453108.1 PREDICTED: THO complex subunit 6-like [Nicotiana tabacum]) HSP 1 Score: 67.0 bits (162), Expect = 1.500e-7 Identity = 75/297 (25.25%), Postives = 118/297 (39.73%), Query Frame = 0 Query: 4 DTRFFDEASYLSQIREEALTQESTIFHTAHCPQNR--------FLLASSNQGRLAIWDLSSYLFPKGPSSSLSSPSFYSSTSYPIASSSSYPLVLQGFQRQLHLNQARLYSAELRRKGYPCLSLQVSHHAINHILFLGQDTAQPLLVLAGDDG-IYSWPWKTILNLLPRTCDEEDGVEGTDNEPCSSTTINIGPPSSILKALPSQK----AFPFLTESNQITSSLPPSSSSSSIFSACGDALVRNWDIETQQCTSLLIGHTGYVHAVKSLGIETTAPGVVVSGGEDGMVGVWDVRTG 288 D R +DE Y I E +Q T+F TA P ++A+ + G +A + +SS L +SL P+A SS ++QG + + F G D LL+ GDDG I W WK +L ++ V+G ++P +N P QK A + E+N + ++ + SIF+A GD+ WD+E + +L GH+ Y+H + + + V++G EDG +WD RTG Sbjct: 6 DCRNWDENVYRDSILLERESQCRTVFRTAFAPNPNPNHNSYPDLIVAAISDGSIASYSISSCLDLSSAGNSL----------VPVAESS---WLVQGHDGPAY-----------------------------DVKFYGND-EDSLLLSCGDDGRIRGWKWKELLG-------SKEPVQGGTSQPMLD-LVN-----------PQQKGPWGALSPIPENN----CMAVNTQTGSIFAAAGDSCAYCWDVEKNEIKMVLKGHSDYLHCI----VARNSHNQVITGSEDGTTRIWDCRTG 232
BLAST of NO03G04460 vs. NCBI_GenBank
Match: XP_011470735.1 (PREDICTED: eukaryotic initiation factor 4A-9 [Fragaria vesca subsp. vesca]) HSP 1 Score: 66.2 bits (160), Expect = 2.500e-7 Identity = 79/293 (26.96%), Postives = 120/293 (40.96%), Query Frame = 0 Query: 1 MQNDTRFFDEASYLSQIREEALTQESTIFHTAHCPQNRFLLASSNQGRLAIWDLSSYLFPKGPSSSLSSPSFYSSTSYPIAS-SSSYPLVLQGFQRQLHLNQARLYSAELRRKGYPCLSLQVSHHAINHILFLGQDTAQPLLVLAGDDG-IYSWPWKTILNLLPRTCDEEDGVEGTDNEPCSSTTINIGPPSSILKALPSQK----AFPFLTESNQITSSLPPSSSSSSIFSACGDALVRNWDIETQQCTSLLIGHTGYVHAVKSLGIETTAPGVVVSGGEDGMVGVWDVRTG 288 M D +DE SY I +E Q T+F TA P +SN P S + + S S +SY I+S S+ PL GF ++ L AE P L+ + F G+ + +L+ GDDG I W WK D V+ P + P ++ P K A + E+N +L ++ SIFSA GD+ V WD+ET Q + GH+ Y+H++ + + +++G EDG +WD ++G Sbjct: 1 MCGDATNWDEESYRESILKEREIQTRTVFRTAWAPS-----LNSN-----------------PDSIVVASSDGSVSSYSISSLVSNLPL---GFS---NVKAPYLLIAE------PSCFLRAHEGPAYDVKFYGEG-EESMLLSCGDDGRIRGWRWK-------------DCVQSDSEVPIHFQGEQLKPVLDLVN--PQHKGPWGALSPIPENN----ALAVNNQGGSIFSAAGDSCVYCWDVETGQVKMIFKGHSDYLHSI----VARNSTNQIITGSEDGTARIWDCKSG 235
BLAST of NO03G04460 vs. NCBI_GenBank
Match: XP_006357715.1 (PREDICTED: THO complex subunit 6 [Solanum tuberosum]) HSP 1 Score: 65.9 bits (159), Expect = 3.200e-7 Identity = 74/296 (25.00%), Postives = 120/296 (40.54%), Query Frame = 0 Query: 4 DTRFFDEASYLSQIREEALTQESTIFHTAHCP---QNRF---LLASSNQGRLAIWDLSSYLFPKGPSSSLSSPSFYSSTSYPIASSSSYPLVLQGFQRQLHLNQARLYSAELRRKGYPCLSLQVSHHAINHILFLGQDTAQPLLVLAGDDG-IYSWPWKTILNLLPRTCDEEDGVEGTDNEPCSSTTINIGPPSSILKALPSQKAFPF-----LTESNQITSSLPPSSSSSSIFSACGDALVRNWDIETQQCTSLLIGHTGYVHAVKSLGIETTAPGVVVSGGEDGMVGVWDVRTG 288 D R +DE Y I E +Q T+F TA P N + ++A+ + G +A + +SS L +SL P+A S ++QG + + YS NH LL+ GDDG I W WK +L ++ +G ++P +L + QK P+ + E+N + ++ + SIF+A GD+ WD+E + +L GH+ Y+H + + + V++G EDG +WD RTG Sbjct: 6 DCRNWDEGIYRDSIILERESQCRTVFRTAFAPNPDHNSYPDLIVAAISDGSIAAYSISSCLGLNSAGNSL----------VPVAEPS---WLVQGHDGPAY--DVKFYS--------------------NH--------EDSLLLSCGDDGRIRGWKWKEMLG-------SKESAQGGVSKP-------------VLDLVNPQKKGPWGALSPIPENNCVA----VNTQTGSIFAASGDSCAYCWDVEKNEIKMVLKGHSDYLHCI----VARNSHNQVITGSEDGTARIWDCRTG 230
BLAST of NO03G04460 vs. NCBI_GenBank
Match: XP_010909939.1 (PREDICTED: THO complex subunit 6 isoform X1 [Elaeis guineensis]) HSP 1 Score: 65.9 bits (159), Expect = 3.200e-7 Identity = 74/289 (25.61%), Postives = 108/289 (37.37%), Query Frame = 0 Query: 4 DTRFFDEASYLSQIREEALTQESTIFHTAHCPQNRFLLASSNQGRLAIWDLSSYLFPKGPSSSLSSPSFYSSTSYPIASSSSYPLVLQGFQRQLHLNQARLYSAELRRKGYPCLSLQVSHHAINHILFLGQDTAQPLLVLAGDDG-IYSWPWKTILNLLPRTCDEEDGVEGTDNEPCSSTTINIGP----PSSILKALPSQKAFPFLTESNQITSSLPPSSSSSSIFSACGDALVRNWDIETQQCTSLLIGHTGYVHAVKSLGIETTAPGVVVSGGEDGMVGVWDVRTG 288 D R +DE Y I E T+F TA P L P P + + + S S SY I++ S L F R++ Y LS+ H + L + LL+ GDDG I W W LN D GV+G D +P + P P L +P A + + SI+SA GDA WD+ET++ + GH+ Y+H + + + +++G EDG +WD R+G Sbjct: 15 DARNWDEEGYRKSILRERELHYRTVFRTAFAPS---------------------LNPT-PETLIVASSDGSLASYSISACISSAAQLVHFNRKIDEKPVPDYLLA------EPLSMIQGHKGPAYDLKFYHVGGEYLLLSCGDDGRIRGWKWTEALN-----SDVSMGVQGNDLKPLLDL---VNPQHEGPWGALSPIPENNA-------------IAVNEQEGSIYSAAGDACAYCWDVETRKRKMVFRGHSDYLHCITA----RKSSNQIITGSEDGTARIWDCRSG 250
BLAST of NO03G04460 vs. NCBI_GenBank
Match: XP_010910001.1 (PREDICTED: THO complex subunit 6 isoform X2 [Elaeis guineensis]) HSP 1 Score: 65.9 bits (159), Expect = 3.200e-7 Identity = 74/289 (25.61%), Postives = 108/289 (37.37%), Query Frame = 0 Query: 4 DTRFFDEASYLSQIREEALTQESTIFHTAHCPQNRFLLASSNQGRLAIWDLSSYLFPKGPSSSLSSPSFYSSTSYPIASSSSYPLVLQGFQRQLHLNQARLYSAELRRKGYPCLSLQVSHHAINHILFLGQDTAQPLLVLAGDDG-IYSWPWKTILNLLPRTCDEEDGVEGTDNEPCSSTTINIGP----PSSILKALPSQKAFPFLTESNQITSSLPPSSSSSSIFSACGDALVRNWDIETQQCTSLLIGHTGYVHAVKSLGIETTAPGVVVSGGEDGMVGVWDVRTG 288 D R +DE Y I E T+F TA P L P P + + + S S SY I++ S L F R++ Y LS+ H + L + LL+ GDDG I W W LN D GV+G D +P + P P L +P A + + SI+SA GDA WD+ET++ + GH+ Y+H + + + +++G EDG +WD R+G Sbjct: 15 DARNWDEEGYRKSILRERELHYRTVFRTAFAPS---------------------LNPT-PETLIVASSDGSLASYSISACISSAAQLVHFNRKIDEKPVPDYLLA------EPLSMIQGHKGPAYDLKFYHVGGEYLLLSCGDDGRIRGWKWTEALN-----SDVSMGVQGNDLKPLLDL---VNPQHEGPWGALSPIPENNA-------------IAVNEQEGSIYSAAGDACAYCWDVETRKRKMVFRGHSDYLHCITA----RKSSNQIITGSEDGTARIWDCRSG 250 The following BLAST results are available for this feature:
BLAST of NO03G04460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 14
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G04460 ID=NO03G04460|Name=NO03G04460|organism=Nannochloropsis oceanica|type=gene|length=1158bpback to top protein sequence of NO03G04460.1 >NO03G04460.1-protein ID=NO03G04460.1-protein|Name=NO03G04460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bpback to top Synonyms
Publications
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