NO03G04240, NO03G04240 (gene) Nannochloropsis oceanica

Overview
NameNO03G04240
Unique NameNO03G04240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1597
Alignment locationchr3:1224073..1225669 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1224073..1225669 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G04240 vs. NCBI_GenBank
Match: EWM29852.1 (hypothetical protein Naga_100017g7 [Nannochloropsis gaditana])

HSP 1 Score: 128.6 bits (322), Expect = 1.300e-26
Identity = 80/119 (67.23%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:    1 MAQGMNKLSKKGLAAQKGKKAHAKASSKRTAAKKGNPTQLPKNIQRRGMALEQARITKAINQNVERVSSARALKAGDTFSMNDVKSIGKELNRDIRREEMTRKKTRVEEKLAELQAKID 120
            MAQG+ KLSKKG  +QK           RTAAKKGNPTQLPKNIQRRGMALEQARITKAINQNVERVSSARALKAGDTFSM DVK IGKE+NRD                  ELQAK++
Sbjct:    1 MAQGLAKLSKKGF-SQKSXXXXXXXXXXRTAAKKGNPTQLPKNIQRRGMALEQARITKAINQNVERVSSARALKAGDTFSMQDVKRIGKEMNRDXXXXXXXXXXXXXXXXXXELQAKVE 118
[Close]
BLAST of NO03G04240 vs. NCBI_GenBank
Match: OQR81568.1 (hypothetical protein THRCLA_23343 [Thraustotheca clavata])

HSP 1 Score: 64.3 bits (155), Expect = 2.900e-7
Identity = 50/127 (39.37%), Postives = 72/127 (56.69%), Query Frame = 0 
Query:    1 MAQGMNKLSKKGLAAQKGKKAHAKASS--KRTAA---KKGNPTQLPK----NIQRRGMALEQARITKAINQNVERVSSARALKAGDTFSMNDVKSIGKELNRDIRREEMTRKKTRVEEKLAELQAKI 119
            MAQG   L  K +   K K    K  +  K+TAA   KKGNPT   +      ++RG     A +T  IN N+E++ ++R L+AG +  + DVK  GKE  ++I +   T+KK+RVEEKLAE++  I
Sbjct:    1 MAQGSTALKHKNVKNMKAKPTKKKVETRHKKTAAKFTKKGNPTVEVRRGCNGFKKRG----DATVTGFINNNIEQIMASRVLQAGSSIMLQDVKKAGKERLKEINQSARTKKKSRVEEKLAEVEKSI 123
The following BLAST results are available for this feature:
BLAST of NO03G04240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29852.11.300e-2667.23hypothetical protein Naga_100017g7 [Nannochloropsi... [more]
OQR81568.12.900e-739.37hypothetical protein THRCLA_23343 [Thraustotheca c... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005473NSK005473Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04240.1NO03G04240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G04240.2NO03G04240.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100017g7gene782Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04240.1NO03G04240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G04240.2NO03G04240.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04240 ID=NO03G04240|Name=NO03G04240|organism=Nannochloropsis oceanica|type=gene|length=1597bp
GCTGCTGCTGCTGCTGCTGCTGCTTTATTTGATGAGTCCATCAATTTGGC
TTCGGACAAGGACCCGCCGGAAGCTGAGGCTGTCAAGGCGGTGGCTCGTA
GCTTGAGGACGGTCGGGCCAGGAGCACTGCTCTCGGGGACAGAAAGGAAT
ATTGGTTTGCTGAAGCTGGCATCGGGGGGTTTCTTGTCATCCTCTCCTGC
TGCTTCCATGAGTTATCGACTGCGCCCTGTATGTAGGGTGAAGGGGGGGG
TGGGGGGGACTTGTCTTCCCATAATCGAAGGAGTTTGGGCGTTTGAGCGA
TGATGCGGTCTCCTTCTAAATAGTACTCTTTTAGACGGAGACCGCATCAA
TCCACAAACTTGCCAATCTCACTTACATGACCCTTACTACACCACGCATG
ACTCGTACCGTTGTACACGTCAGGCCTGCCAGCGTCTTCCTAGTTGCACG
TAACCGAGAGCTCCAAGCATCGTCTTCGCTCGGGGGCGTACGTACGCCCT
CTGTCCCTCCAGACTCTGCTGCACTGTCATCCTTAGGCTCTCAAGgtacg
agccaagcgacatcactgcgtacatcactgcggtcctctgtgctgatgcg
cttcatatcagtgcagtcaccgaggtccaagttgtctaccttccgcagcc
gccttacatatcttcactttcacactccttacacagCTCTTCATACACTA
TGGCTCAAGGAATGAACAAGCTGAGCAAGAAGGGTTTGGCCGCCCAAAAG
GGAAAGAAGGCGCACGCCAAGGCTAGCAGCAAACGGACTGCTGCTAAAAA
AGGAAGTGAGTTGAGTTGGGGTTGATTTCTGATTCTTTTTTGCGAATAAT
TTTACTTGACCTTTTTTTTAGTGCATATACGGGAGGGCTGTTCATGGCAA
TTGTCGAAGCACGCCGACAACGGTTTGTGCAGAGAATGACACCTCTATGG
TCAAGGCGCTAAGGTCTTCCGCACATGAGCCATCCCGGGGCTTGTGCGGC
TTTGACGCATGTATGCCCGTCCCGGACCACGATAGTATCAATCGgtaaac
cccctgtccctgcgtgtcccttttttttgctccccgcctccttatttctt
gcatgtgctgatgattgctgaaggttatgcgagcgacaataccacagctt
gttcttgctggtgatgtcctctcctttctcccgtggctccacccaactcc
ccccttcacacccaacctacctcatcaccacctcacatctcccttacatt
gccagACCCGACACAACTCCCAAAGAATATCCAACGCCGGGGTATGGCAT
TGGAACAAGCTCGCATTACCAAGGCCATAAATCAAAACGTCGAGCGAGTT
TCTTCGGCCAGAGCGCTCAAGGCAGGGGACACTTTCTCGATGAATGACGT
CAAGAGCATCGGCAAAGAGTTGAATCGGGATATCCGTCGAGAGGAGATGA
CGAGGAAGAAGACCCGGGTGGAGGAGAAGCTGGCAGAATTGCAGGCGAAG
ATAGATGCTTGAGGTGATCAAGGGGAATATTATTTTTGTCTCATGTTTTA
CTGGTACGAGTCCAAAATGGAAATATACTTGTTTCAATTGTTGTGTT
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protein sequence of NO03G04240.1

>NO03G04240.1-protein ID=NO03G04240.1-protein|Name=NO03G04240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MSHPGACAALTHVCPSRTTIVSIDPTQLPKNIQRRGMALEQARITKAINQ
NVERVSSARALKAGDTFSMNDVKSIGKELNRDIRREEMTRKKTRVEEKLA
ELQAKIDA*
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protein sequence of NO03G04240.2

>NO03G04240.2-protein ID=NO03G04240.2-protein|Name=NO03G04240.2|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MAQGMNKLSKKGLAAQKGKKAHAKASSKRTAAKKGNPTQLPKNIQRRGMA
LEQARITKAINQNVERVSSARALKAGDTFSMNDVKSIGKELNRDIRREEM
TRKKTRVEEKLAELQAKIDA*
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Synonyms
Publications