NO03G04220, NO03G04220 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G04220 vs. NCBI_GenBank
Match: EWM29856.1 (dna-directed rna polymerase iii subunit rpc8 [Nannochloropsis gaditana]) HSP 1 Score: 388.3 bits (996), Expect = 1.800e-104 Identity = 216/246 (87.80%), Postives = 233/246 (94.72%), Query Frame = 0 Query: 1 MFQLAIIRDSIKVPPASFNRDQVEVLTEEVDRKYANRIVMDVGLGVCLYDFVEIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVAQCNENGIKVSLGFFDDIFVPSYLLQTPSEFDPRENVWVWTYNSDEPGEPAVRYPMEVDEAIRFRVRSINFAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVEIEVGGMVGLRRPRSDTLTGDDGAGGPVAPMQLMGTTNEDGLGMLAWWG 247 MFQLA+IRD+IKVPPASFNR+Q+EVLTEEVDRKYANRIVM+VGLGVCLYDFV+IGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRV QC+ENGIK+SLGFFDDIFVPSYLLQTPSEFDPRENVWVW+Y+SDEPGEPAVRYPMEVDE IRFRVRS+NF H XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVE+E GG+ +RRPRSDTLTGD+ GGP+ PMQL+GTTNEDGLGMLAWWG Sbjct: 1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTH-TKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG 245
BLAST of NO03G04220 vs. NCBI_GenBank
Match: XP_005854944.1 (DNA-directed RNA polymerase III subunit RPC8 [Nannochloropsis gaditana CCMP526] >EKU21415.1 DNA-directed RNA polymerase III subunit RPC8 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 343.6 bits (880), Expect = 5.100e-91 Identity = 194/221 (87.78%), Postives = 208/221 (94.12%), Query Frame = 0 Query: 26 LTEEVDRKYANRIVMDVGLGVCLYDFVEIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVAQCNENGIKVSLGFFDDIFVPSYLLQTPSEFDPRENVWVWTYNSDEPGEPAVRYPMEVDEAIRFRVRSINFAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVEIEVGGMVGLRRPRSDTLTGDDGAGGPVAPMQLMGTTNEDGLGMLAWWG 247 +TEEVDRKYANRIVM+VGLGVCLYDFV+IGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRV QC+ENGIK+SLGFFDDIFVPSYLLQTPSEFDPRENVWVW+Y+SDEPGEPAVRYPMEVDE IRFRVRS+NF H XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVE+E GG+ +RRPRSDTLTGD+ GGP+ PMQL+GTTNEDGLGMLAWWG Sbjct: 1 MTEEVDRKYANRIVMNVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPGEPAVRYPMEVDEFIRFRVRSVNFTH-TKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWWG 220
BLAST of NO03G04220 vs. NCBI_GenBank
Match: XP_008903061.1 (DNA-directed RNA polymerase [Phytophthora parasitica INRA-310] >ETI50991.1 DNA-directed RNA polymerase [Phytophthora parasitica P1569] >ETK90878.1 DNA-directed RNA polymerase [Phytophthora parasitica] >ETL44286.1 DNA-directed RNA polymerase [Phytophthora parasitica] >ETL97451.1 DNA-directed RNA polymerase [Phytophthora parasitica] >ETM50610.1 DNA-directed RNA polymerase [Phytophthora parasitica] >ETN11243.1 DNA-directed RNA polymerase [Phytophthora parasitica INRA-310] >ETO79732.1 DNA-directed RNA polymerase [Phytophthora parasitica P1976] >ETP20756.1 DNA-directed RNA polymerase [Phytophthora parasitica CJ01A1] >ETP48700.1 DNA-directed RNA polymerase [Phytophthora parasitica P10297]) HSP 1 Score: 198.7 bits (504), Expect = 2.000e-47 Identity = 106/246 (43.09%), Postives = 141/246 (57.32%), Query Frame = 0 Query: 1 MFQLAIIRDSIKVPPASFNRDQVEVLTEEVDRKYANRIVMDVGLGVCLYDFVEIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVAQCNENGIKVSLGFFDDIFVPSYLLQTPSEFDPRENVWVWTYNSDEPGEPAVRYPMEVDEAIRFRVRSINFAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVEIEVGGM-VGLRRPRSDTLTGDDGAGGPVAPMQLMGTTNEDGLGMLAWW 246 MF L I D I V P F+ D +VL EE+DRKYAN+++ DVGL + LYDFV IGDA+++PSDG +H +V FRL+VFRPF+GEVL GR+ C E I+VS+ F DI +PSY LQTPS FD E +WVW Y+ E ++ M++ E IRFRV +INF + E+ G M L R RS ++ D P A + ++GT +EDGLG+ +WW Sbjct: 1 MFALTRISDVIPVAPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYS-----EGQEKFYMDLHEEIRFRVTNINFTR--------------VTKTAKGIQATTTEATDKAEKEVSAGDMRQSLARRRSSSVDLSDNDPTPSA-IHILGTIDEDGLGLSSWW 226
BLAST of NO03G04220 vs. NCBI_GenBank
Match: XP_009514552.1 (hypothetical protein PHYSODRAFT_538886 [Phytophthora sojae] >EGZ27277.1 hypothetical protein PHYSODRAFT_538886 [Phytophthora sojae]) HSP 1 Score: 198.4 bits (503), Expect = 2.700e-47 Identity = 106/246 (43.09%), Postives = 141/246 (57.32%), Query Frame = 0 Query: 1 MFQLAIIRDSIKVPPASFNRDQVEVLTEEVDRKYANRIVMDVGLGVCLYDFVEIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVAQCNENGIKVSLGFFDDIFVPSYLLQTPSEFDPRENVWVWTYNSDEPGEPAVRYPMEVDEAIRFRVRSINFAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVEIEVGGM-VGLRRPRSDTLTGDDGAGGPVAPMQLMGTTNEDGLGMLAWW 246 MF L I D I V P F+ D +VL EE+DRKYAN+++ DVGL + LYDFV IGDA+++PSDG +H +V FRL+VFRPF+GEVL GR+ C E I+VS+ F DI +PSY LQTPS FD E +WVW Y+ E ++ M++ E IRFRV +INF + E+ G M L R RS ++ D P A + ++GT +EDGLG+ +WW Sbjct: 1 MFVLTRISDVIPVAPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYS-----EGQEKFYMDLHEEIRFRVTNINFTR--------------VTKTAKGIQATTTEATDKAEKEVSAGDMRQSLARRRSSSVDLSDNDPTPSA-IHILGTIDEDGLGLSSWW 226
BLAST of NO03G04220 vs. NCBI_GenBank
Match: XP_024584234.1 (dna-directed rna polymerase [Plasmopara halstedii] >CEG47865.1 dna-directed rna polymerase [Plasmopara halstedii]) HSP 1 Score: 196.8 bits (499), Expect = 7.800e-47 Identity = 106/248 (42.74%), Postives = 141/248 (56.85%), Query Frame = 0 Query: 1 MFQLAIIRDSIKVPPASFNRDQVEVLTEEVDRKYANRIVMDVGLGVCLYDFVEIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVAQCNENGIKVSLGFFDDIFVPSYLLQTPSEFDPRENVWVWTYNSDEPGEPAVRYPMEVDEAIRFRVRSINFAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVEIEVGG---MVGLRRPRSDTLTGDDGAGGPVAPMQLMGTTNEDGLGMLAWW 246 MF L I D I V P F+ D +VL EE+DRKYAN+++ DVGL + LYDFV IGDA+++PSDG +H +V FRL+VFRPF+GEVL GR+ C E I+VS+ F DI +PSY LQTPS FD E +WVW Y+ + ++ M++ E IRFRV +INF K E E+G L R RS ++ D P A + ++GT +EDGLG+ +WW Sbjct: 1 MFVLTRISDVIPVEPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAHVHPSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYSDGQE-----KFFMDLHEEIRFRVTNINFTR----------------VTKTAKGIQATTTEATDKSEKEIGAGDMRRSLARQRSSSVDLSDNDPTPSA-IHILGTIDEDGLGLSSWW 226
BLAST of NO03G04220 vs. NCBI_GenBank
Match: XP_002895556.1 (DNA-directed RNA polymerase III subunit RPC8, putative [Phytophthora infestans T30-4] >EEY55871.1 DNA-directed RNA polymerase III subunit RPC8, putative [Phytophthora infestans T30-4]) HSP 1 Score: 196.4 bits (498), Expect = 1.000e-46 Identity = 106/246 (43.09%), Postives = 140/246 (56.91%), Query Frame = 0 Query: 1 MFQLAIIRDSIKVPPASFNRDQVEVLTEEVDRKYANRIVMDVGLGVCLYDFVEIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVAQCNENGIKVSLGFFDDIFVPSYLLQTPSEFDPRENVWVWTYNSDEPGEPAVRYPMEVDEAIRFRVRSINFAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVEIEVGGM-VGLRRPRSDTLTGDDGAGGPVAPMQLMGTTNEDGLGMLAWW 246 MF L I D I V P F+ D +VL EE+DRKYAN+++ DVGL + LYDFV IGDA+++PSDG +H +V FRL+VFRPF+GEVL GR+ C E I+VS+ F DI +PSY LQTPS FD E +WVW Y+ E ++ M++ E IRFRV +INF + EI G M L R RS ++ D P A + ++ T +EDGLG+ +WW Sbjct: 1 MFVLTRISDVIPVAPELFDADYTQVLIEEIDRKYANKVIADVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRLVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYS-----EGQEKFYMDLHEEIRFRVTNINFTR--------------VTKTAKGIQATTTEATDKAEKEISAGDMRQSLARRRSSSVDLSDNDPTPSA-IHILATIDEDGLGLSSWW 226
BLAST of NO03G04220 vs. NCBI_GenBank
Match: OWZ15698.1 (DNA-directed RNA polymerase III subunit RPC8 [Phytophthora megakarya]) HSP 1 Score: 195.7 bits (496), Expect = 1.700e-46 Identity = 105/246 (42.68%), Postives = 141/246 (57.32%), Query Frame = 0 Query: 1 MFQLAIIRDSIKVPPASFNRDQVEVLTEEVDRKYANRIVMDVGLGVCLYDFVEIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVAQCNENGIKVSLGFFDDIFVPSYLLQTPSEFDPRENVWVWTYNSDEPGEPAVRYPMEVDEAIRFRVRSINFAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVEIEVGGM-VGLRRPRSDTLTGDDGAGGPVAPMQLMGTTNEDGLGMLAWW 246 MF L I D I V P F+ D +VL EE+DRKYAN+++ DVGL + LYDFV IGDA+++PSDG +H +V FR++VFRPF+GEVL GR+ C E I+VS+ F DI +PSY LQTPS FD E +WVW Y+ E ++ M++ E IRFRV +INF + +I G M L R RS ++ D P A + ++GT +EDGLG+ +WW Sbjct: 1 MFVLTRISDVIPVAPELFDGDYTQVLIEEIDRKYANKVLTDVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRMVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTTERLWVWKYS-----EGQEKFYMDLHEEIRFRVTNINFTR--------------VTKTAKGIQATTTEATEKAEKDINAGDMRQSLARRRSSSVDLSDNDPTPSA-IHILGTIDEDGLGLSSWW 226
BLAST of NO03G04220 vs. NCBI_GenBank
Match: POM68455.1 (DNA-directed RNA polymerase [Phytophthora palmivora var. palmivora]) HSP 1 Score: 195.3 bits (495), Expect = 2.300e-46 Identity = 104/246 (42.28%), Postives = 140/246 (56.91%), Query Frame = 0 Query: 1 MFQLAIIRDSIKVPPASFNRDQVEVLTEEVDRKYANRIVMDVGLGVCLYDFVEIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVAQCNENGIKVSLGFFDDIFVPSYLLQTPSEFDPRENVWVWTYNSDEPGEPAVRYPMEVDEAIRFRVRSINFAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVEIEVGGM-VGLRRPRSDTLTGDDGAGGPVAPMQLMGTTNEDGLGMLAWW 246 MF L I D I V P F+ D +VL EE+DRKYAN+++ DVGL + LYDFV IGDA+++PSDG +H +V FR++VFRPF+GEVL GR+ C E I+VS+ F DI +PSY LQTPS FD E +WVW Y+ E ++ M++ E IRFRV +INF + + G M L R RS ++ D P A + ++GT +EDGLG+ +WW Sbjct: 1 MFVLTRISDVIPVAPELFDADYTQVLVEEIDRKYANKVIADVGLCITLYDFVSIGDAFVHPSDGTSHSQVEFRMVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYS-----EGQEKFYMDLHEEIRFRVTNINFTR--------------VTKTAKGIQATTTEATDKAEKDANAGDMRQSLARRRSSSVDLSDNDPTPSA-IHILGTIDEDGLGLSSWW 226
BLAST of NO03G04220 vs. NCBI_GenBank
Match: CCI46337.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 193.7 bits (491), Expect = 6.600e-46 Identity = 99/245 (40.41%), Postives = 143/245 (58.37%), Query Frame = 0 Query: 1 MFQLAIIRDSIKVPPASFNRDQVEVLTEEVDRKYANRIVMDVGLGVCLYDFVEIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVAQCNENGIKVSLGFFDDIFVPSYLLQTPSEFDPRENVWVWTYNSDEPGEPAVRYPMEVDEAIRFRVRSINFAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVEIEVGGMVGLRRPRSDTLTGDDGAGGPVAPMQLMGTTNEDGLGMLAWW 246 MF L I D I + P F+ D +VL EE+DRKY N+++ DVGL + +YDF+ IGDA ++PS+G +H +V FR++VFRPFIGEVL G++ CNEN I++++ F DI +PSY LQTPS FD E +WVWT+ + A ++ M+++E IRFRV ++NF K ++ G + RR R ++ D P A MQ++GT +EDGLG+ +WW Sbjct: 1 MFVLTRISDVIAIHPMLFDGDYTKVLKEEIDRKYCNKVIADVGLCISVYDFIAIGDALIHPSEGDSHTQVEFRMIVFRPFIGEVLKGKILSCNENHIRITMEFMQDILIPSYALQTPSHFDTYERLWVWTFT-----DSAEKFHMDLNEEIRFRVTNVNFTQ-------------VHKTAKGMQATTSESTEKKDKASLKRGNLDDKRR-RLSSVDLSDSDPTPSA-MQILGTIDEDGLGLTSWW 225
BLAST of NO03G04220 vs. NCBI_GenBank
Match: CCA17366.1 (DNAdirected RNA polymerase III subunit RPC8 putative [Albugo laibachii Nc14]) HSP 1 Score: 191.8 bits (486), Expect = 2.500e-45 Identity = 98/245 (40.00%), Postives = 142/245 (57.96%), Query Frame = 0 Query: 1 MFQLAIIRDSIKVPPASFNRDQVEVLTEEVDRKYANRIVMDVGLGVCLYDFVEIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVAQCNENGIKVSLGFFDDIFVPSYLLQTPSEFDPRENVWVWTYNSDEPGEPAVRYPMEVDEAIRFRVRSINFAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVEIEVGGMVGLRRPRSDTLTGDDGAGGPVAPMQLMGTTNEDGLGMLAWW 246 MF LA I D I + P F+ D VL EE+D+K+ N+++ DVGL + +YDF+ IGDA ++PS+G +H +V FR++VFRPFIGEVL G++ CNEN I++++ F DI +PSY LQTPS FD E +WVWT+ E GE ++ M+++E +RFRV ++NF GG + R+ R ++ D P A MQ++GT +EDGLG+ +WW Sbjct: 1 MFVLARISDVIAIHPMLFDGDYTRVLKEEIDKKFCNKVIADVGLCISVYDFIAIGDALIHPSEGDSHTQVEFRMVVFRPFIGEVLKGKILSCNENHIRITMEFMQDILIPSYALQTPSHFDTYERLWVWTFT--ESGE---KFHMDLNEEVRFRVTNVNFTQVHKTAKGMQATTIESTDKDGKSTLK--------------GGNIDDRKRRLSSVDLSDNDPTPSA-MQILGTIDEDGLGLTSWW 225 The following BLAST results are available for this feature:
BLAST of NO03G04220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G04220 ID=NO03G04220|Name=NO03G04220|organism=Nannochloropsis oceanica|type=gene|length=857bpback to top protein sequence of NO03G04220.1 >NO03G04220.1-protein ID=NO03G04220.1-protein|Name=NO03G04220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bpback to top Synonyms
Publications
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